Gene

KWMTBOMO08370  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009285

Annotation

PREDICTED:_RNA-binding_protein_28_[Bombyx_mori]

Location

Bomo_Chr14(+):6958807-6974080      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.741

CDS

ATGGGAAATGATTACAACGATACTAATGATTCTATAGACGAAAATTCAAAATACAAAGATGGGGTGAACAGAAATGCTAGACTCATAGTAAGAAATTTATCTTTCAAAGCCACTGAAAAAGAATTAAAAGAACATTTTTCACATTATGGTACCGTGGAAGAAGTAAAGCTATTGAGGAGACCAGATGGTAAATTGGTTGGATGTGGCTTTGTGCATTTCACTCAAGTTCCCATGGCAAATAAAGCTTTGTCAGCTACAAATAAAAAACTGTTTCTTGATAGACCGATACAAGTGGGGTGGGCTGTTCCTAGATACAAATACAGTGAGCAGAGACAGGACAATGAAGCTACAGATGATAGAAAGAGTAAACCTGAAAAAAGTGAAATTAAATGTAAAAGAGAAATCAAAACTGAACCAGAAAAACAAAAACCAAGAGTTAATAGAAATGCTCGATTAGTTATTAGGAATGTATCATTTAAAGCCACAGAAGAATCCTTAAAAGAATATTTTGCACCTTATGGTGATATACTGGAGGTGAAATTACTAAAAAAGCCGGATGGAAAATTGGTTGGATGTGCTTTTGTTCATTACAAGAATGTACCAATGGCTAAGAAAGCATTATTGAATACAAATATGAAACCTTTTTTAGGCAGACCAATATCAGTGGACTGGGCTGTACCGAAAGACAAGTATATGCAACACATCGTGCACCAACAACTTGAGCTTCAGGACCAAGTCAAGAAGGAGGAGTCAGATAGTGATGATGATGGAGCACAATTGAATTTGTCAAGTGATGATATTAAACCAGAAGTTAAGAGTGAATCTGATGATGACACTGATGATAATGTAAAGTCAGAAAGTGATTCAGAAAAAGAAGACAATAGTGATGATGAGAAAGAAGAAGACGAAGAGTCAGCTGATGAAGATCAGGAAGATATGGATGATAACTTAAGTCAGACTAGCACACAAGCTGAAACAAAAAGGATAAGATTAAACGATGCTGAAGACGGATGCACAGTCTTTGTAACAAATATACCTTTTAGTATAGATAATGATCAGTTAAGAGATTTCGCCGAGAAAATCGGGCCCGTGAAATATGCACTTATATGTATGGATAAGCTCACTGAACATTCTAAAGGAACTGGCTTTATTAAATTTGTGAACAAGGAGGATGCAGATAAAATCCTGTCAGCATCGGCAGATCATTTGAAGCTGGAGGGTCAAGTGTTACAGGTGAAGCCGGCATTAAAGAAAGAAAATTTACAGAATGGCAAGAAGAAAGAACCTAAAGATAACAGGAATTTATATCTCGTCAAAGAAGGAGTCATAGTGGCCGGTACAAAAGCAGCTGTCGGCGTATCCGCTTCCGATATGTCTAAGAGATTGGCCTTAGAGCGAAGTAAGACACAGATGTTAAAGAACTTGAATAGATTCGTATCGCGGTACCGCCTGGTAGTATCGAACCTGCCGCCGAACTGTGACGACTCCACGCTGCGCCGCGTGTGCAGTCGCGCGGCGGGGATGGACGAGGGCGGGGGGCGGGGCGCGGCGAGGAGGGGCGGCGTGCTGACGGAGGCGCGCGTCATGCGGGACCTCCGCGCGCCGGTCGGGAGGGACGGGAAACATCCATCTAAAGGTTACGGTTTCGTGATGTTCACAAGACACGAAGACGCCTTGGCCTGTCTCAGGAAATTGAACAATAATCCGGATATATTTGATAAAAATAACAGACCAATCGTATCGTTCTCAATAGAAGATCGGACAGCTCTGAACGCAAGAAAGAAGAGACTAGAAAAGTCAGTCGCCAACAATCCGCTCGCTAAAAAACAAGAAAATAACGGAGCCATAGACTACGGGAAAAACAGAAAGAGAAAAGCGAACAAAGCACCCGAAGAAGGTTACGCAAAGAAAGGGAGATACGATAAGAAGAATAAACAGAACAACACTGAATACGGCAGCGGTAGGTTCGTTAGAAATCCTAAAGTAGAAAATGTCAACGAATTTACCGGATTAACAGCGAAGGAAGGAACCCAACATAAAATGAGAAGTAATTTTAAGTTAAAGGAACAGGCTGAGGTCCATAAAAAGGCCATGAAGATTGAGAAAAAGAAAGGCAAGCACGCACTGAAACTGAAGAGGTTGGCGAGGGAGAGGATCAAGCAGCCCAAACAGCCGATCAACAAGACTAATGAGTCGCGGAGAAAAAAGAATAAACGTCGAACACAATGA

Protein

MGNDYNDTNDSIDENSKYKDGVNRNARLIVRNLSFKATEKELKEHFSHYGTVEEVKLLRRPDGKLVGCGFVHFTQVPMANKALSATNKKLFLDRPIQVGWAVPRYKYSEQRQDNEATDDRKSKPEKSEIKCKREIKTEPEKQKPRVNRNARLVIRNVSFKATEESLKEYFAPYGDILEVKLLKKPDGKLVGCAFVHYKNVPMAKKALLNTNMKPFLGRPISVDWAVPKDKYMQHIVHQQLELQDQVKKEESDSDDDGAQLNLSSDDIKPEVKSESDDDTDDNVKSESDSEKEDNSDDEKEEDEESADEDQEDMDDNLSQTSTQAETKRIRLNDAEDGCTVFVTNIPFSIDNDQLRDFAEKIGPVKYALICMDKLTEHSKGTGFIKFVNKEDADKILSASADHLKLEGQVLQVKPALKKENLQNGKKKEPKDNRNLYLVKEGVIVAGTKAAVGVSASDMSKRLALERSKTQMLKNLNRFVSRYRLVVSNLPPNCDDSTLRRVCSRAAGMDEGGGRGAARRGGVLTEARVMRDLRAPVGRDGKHPSKGYGFVMFTRHEDALACLRKLNNNPDIFDKNNRPIVSFSIEDRTALNARKKRLEKSVANNPLAKKQENNGAIDYGKNRKRKANKAPEEGYAKKGRYDKKNKQNNTEYGSGRFVRNPKVENVNEFTGLTAKEGTQHKMRSNFKLKEQAEVHKKAMKIEKKKGKHALKLKRLARERIKQPKQPINKTNESRRKKNKRRTQ

Uniprot

A0A1E1WRR8   A0A194Q4C5   A0A3S2NYV1   A0A2A4JBY2   A0A1B6GH73   A0A1B6FUT0   + More
E2AFK0   A0A1B6MTY9   A0A2A3EKP8   A0A088A456   A0A1B6CES8   K7J2R2   A0A067RIQ3   F4WNP3   A0A195FVS6   A0A151XBU9   A0A232F1J9   A0A2J7PYH9   A0A151INK9   A0A158NVD0   A0A195ECE0   A0A195B8G1   A0A154PR19   N6TVK4   U4UJY6   A0A0T6AX91   J9K486   A0A1A9WK30   Q9W124   A0A2R7WQV9   B5RJM2   A0A0J9RLU7   B4QCI4   A0A0L7KZ94   B4IH66   A0A2S2PEM0   A0A1A9ZP68   A0A0L7R605   A0A1Y1LCX0   B3MEB3   B4LMM0   A0A2P8Y420   A0A034VYW1   A0A0N7ZD41   A0A069DVA5   A0A0V0G9C1   A0A0K8W3B7  

Pubmed

26354079    20798317    20075255    24845553    21719571    28648823    + More
21347285    23537049    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    17994087    26227816    28004739    29403074    25348373    26334808   

EMBL

GDQN01001321    JAT89733.1    KQ459585    KPI98260.1    RSAL01000021    RVE52546.1    + More
NWSH01002192    PCG68940.1    GECZ01007983    JAS61786.1    GECZ01015888    JAS53881.1    GL439118    EFN67751.1    GEBQ01000622    JAT39355.1    KZ288219    PBC32280.1    GEDC01025377    GEDC01006773    JAS11921.1    JAS30525.1    KK852446    KDR23731.1    GL888237    EGI64236.1    KQ981215    KYN44526.1    KQ982316    KYQ57834.1    NNAY01001258    OXU24591.1    NEVH01020348    PNF21399.1    KQ976927    KYN07053.1    ADTU01002882    KQ979074    KYN22776.1    KQ976565    KYM80530.1    KQ435066    KZC14342.1    APGK01053059    APGK01053060    KB741220    ENN72431.1    KB632238    ERL90501.1    LJIG01022617    KRT79604.1    ABLF02030151    AE013599    BT023833    AAF47253.2    AAZ86754.1    KK855314    PTY21958.1    BT044496    ACH95270.1    CM002911    KMY96404.1    CM000362    EDX08600.1    JTDY01004133    KOB68542.1    CH480838    EDW49242.1    GGMR01015278    MBY27897.1    KQ414648    KOC66322.1    GEZM01061147    JAV70731.1    CH902619    EDV36519.1    CH940648    EDW60007.2    PYGN01000954    PSN38981.1    GAKP01010441    GAKP01010440    JAC48511.1    GDRN01053180    JAI66192.1    GBGD01001143    JAC87746.1    GECL01001576    JAP04548.1    GDHF01032524    GDHF01006914    GDHF01002072    JAI19790.1    JAI45400.1    JAI50242.1   

Proteomes

UP000053268    UP000283053    UP000218220    UP000000311    UP000242457    UP000005203    + More
UP000002358    UP000027135    UP000007755    UP000078541    UP000075809    UP000215335    UP000235965    UP000078542    UP000005205    UP000078492    UP000078540    UP000076502    UP000019118    UP000030742    UP000007819    UP000091820    UP000000803    UP000000304    UP000037510    UP000001292    UP000092445    UP000053825    UP000007801    UP000008792    UP000245037   

PRIDE

Q9W124    B5RJM2   

Pfam

PF00076   RRM_1        + More
PF00173   Cyt-b5

Interpro

IPR035979   RBD_domain_sf        + More
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR003954   RRM_dom_euk       
IPR036400   Cyt_B5-like_heme/steroid_sf       
IPR001199   Cyt_B5-like_heme/steroid-bd       

SUPFAM

SSF54928   SSF54928        + More
SSF55856   SSF55856       

Gene 3D

3.30.70.330     3.10.120.10    

ProteinModelPortal

A0A1E1WRR8   A0A194Q4C5   A0A3S2NYV1   A0A2A4JBY2   A0A1B6GH73   A0A1B6FUT0   + More
E2AFK0   A0A1B6MTY9   A0A2A3EKP8   A0A088A456   A0A1B6CES8   K7J2R2   A0A067RIQ3   F4WNP3   A0A195FVS6   A0A151XBU9   A0A232F1J9   A0A2J7PYH9   A0A151INK9   A0A158NVD0   A0A195ECE0   A0A195B8G1   A0A154PR19   N6TVK4   U4UJY6   A0A0T6AX91   J9K486   A0A1A9WK30   Q9W124   A0A2R7WQV9   B5RJM2   A0A0J9RLU7   B4QCI4   A0A0L7KZ94   B4IH66   A0A2S2PEM0   A0A1A9ZP68   A0A0L7R605   A0A1Y1LCX0   B3MEB3   B4LMM0   A0A2P8Y420   A0A034VYW1   A0A0N7ZD41   A0A069DVA5   A0A0V0G9C1   A0A0K8W3B7  

PDB

6R5K     E-value=1.86812e-12,     Score=178

KEGG

101735989    K14573 nucleolar protein 4 | (RefSeq) RNA-binding protein 28

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0003729   GO:0000166   GO:0003676   GO:0030246   GO:0016853   GO:0019318   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

Length:

742

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02744

Exp number, first 60 AAs:

4e-05

Total prob of N-in:

0.00457

outside

1  -  742

 

 

Pi

157.930532

Theta

132.630409

Tajima's D

0.659647

CLR

0.042946

CSRT

0.56317184140793

Interpretation

Uncertain