Gene

KWMTBOMO08367  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009223

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_UBR1-like_[Bombyx_mori]

Location

Bomo_Chr14(-):6904112-6924706      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.99

CDS

ATGATGATGGGTCGTCTAGAGTTCGATCGCAACCACGTGTCGGTGGCGTACAAGCGCGCCCAGTTCGTGCTGTTCGACGTGAAGTACCTGCTGGGCTCCGTGCCGGCGAGCTTCGACGACGACCTGCGGAAGGGTTTCCTGCACGGGCTCTCGTTGCTGCTCAACCTGTTCGTCATGATGCAAGGGATGGACTCGGTTGTTAGACAGGTGGGTCAGCACATGGAATACGAGCCGGAGTGGGAGTCCGCGTTCAACTTGCACGTGAAGCTGGCGCAGTCCATCACCATGTCGCTGGAGTGGTGCGCGGCCGAGCGGCCCCTCACCGCCTCCGCCTACCGCATGGCGCTGCGCCGCCACGCCGCCGCCACCGCGCCCGCGCCGCGACAGCTCAAAGAGCTGGGTAACCAGAGCGCGTCCGTGATCCCGTACGACGTCTCCGTGGACCCGGTGTCGATCCATCGTCCCCTGTCGCGGTACATTGCGGGCCTGCACCTGCTGCTGCACCGCCACGGCCTGTCCTACCACAGCCCGGAGTTCGATCGACAGGACAAACAAAAATCGTCGCCGGAGGAACTCATCGAGCCAGTGCTGCAGACAATGGCGATGATAGCCCAAGTTCACGCCGGCATGTGGCGGAGGAACGGCTTCGCCTTACTCAATCAGCTGTATTTCTACCACAACGTGAAGTGTCGGACCGAGATGTTAGATCGGGACGTCGTCATGCTGCAAATTGGCGCATCTCTAATCGAAAGCAACGAATTCATGATACACGTACTGAACAAGTACAACCTACTGGACTGGGCGTCACCTGAATTCGAGAAGCAAAGCATCGAGGACGACACACTGAGACACACAATTAGCATGGTGGAAGAGTTCCTGGGGCTACTAATTACTATTGTCGGTTCTCGCCACGTGCCCGGCGTCGGGGAAGTGACCAACGAAGACAGAACAAAAAAAGAGATTATACAAATGCTCTGTGTTAAACCGATGCCACACTCGGAACTCAACAGGTGTCTACCAGAGGATCAACTGCACGAAACTGGTCTCGAATCTGTCATCAACGAGGTGGCGGACTTCGTGAAGCCAACGAGCGGCACGAACCGCGGTCTCTACAAACTCAAATCGCACTTGTACGATGAATACGACACTTTCTTCTATCATTACACAAGAGAAGAACTGTCCAGGAGCGAAGAGGAACAAAGGAACAGAAGGAAGGCTGCCGGCCTGTCGGAGTGCTGCCCGCCGCCGGTGCTGCCGAAGCTGTCGCCGCCGTTCTCGATGCTGGCGCACCTGCTGCAGAGCGACGCGGCGCTGCTCGTGCTGCGGACCGTGCTGCTGCGGGCCCTCGACCTGCGGGCGCGCGCCTTCTCCGAGACGCAAGTGCACAAGGCGCTCCACTTAATGGGCTACGCAATTCGAGACGAAGAGAGCGGCCACTACGAATTCTTAGCGTTCGCCGAAAGTGCGAATCGTTGCGGCCTGGTGGCGCTGCTACAGAAGCTGGTGGCCAGTCCCAGAGTGGACGCGCACAGACATCTCGCCAAATGGGTGCTCACTAGGATAAAAGCTCTGTTAGGAGAAACGGACGACCAAGACGAACAGAAAATGGAAACTGATCAAGAAGAGAAACCGAACGCAGCCGAAGCAGAAGCGGAAAAGGAACGTCGCGCGAAGTTAGCGGCGGAACGTAGAGCTAAGGTGATGGCGCAGATGAAAACTCAAATGAAAAATTTCATATCCAACAACGCTACATTGTTCGAGGAAACCAACACCGAGGTAACAGCTGAAGAACAGGACCTTCGGCCTTTGTACTGCGGAGCTGCTCTCGGAGTGTGGGGGGGCGGAGTCCCGGAACCTCCGCGGGTCTGCATCATGTGCCAAGAAGAGGCACGCGTCGACGGAACGGGAGAACCGCTAGTATTAGTGGCCTTCGTACAACAATCTGGTGTGCTGAGCCGGATCAGAGATGCTGGAGACAACGAGAGGAGTCGGGACGCCTGGCTGCCTGCTGGCATCAGGCCCCAGCCTCACGTCTCGAGCTGTGGTCATGCGCTCCACGCTCGCTGCTGTAGGAATTATGTTGATGCTGTACTTGAAAAGGAGAATCGCAGACCGTATCGCGGCCGCCAGCCTGCTGCCTTCGACGTGGAAAAGAAAGAATATCTGTGTCCGCTGTGCGAGAGGCTCTGTAACACCGCCCTCCCGCTACTGCCCAGTCCCGCCCTCCCCGGAGGCACCCCGCCCCCTCTCACCGAGGAAATGTACAACGACGCCGTCAACCTCATCCTGAAACTAAAACACCAAGTGTGCTCCGAGTCGGTCCACGTGTGCACCGAGTTCTGCGAGGAGATGCACTGCCAGGCGCGGGCCAGGAGCGTGGGCGCCATGTCCTCCGACATGGAGGAGGAGTCCGCTGACGAAGCCGAGGTCTACGTCTCGACTCACTCGGAGAACTTGCTGTCGCCTGAATTCCTGGTGCACTTTGAGGGCGAGGTGCCGCAGTACAATGAGCTTACGAAGACGTTAATCGAAGAATTTGCTAGTGTTTTACCCGCGTCCGAGTACGGCGGGATGGCGTCCACGGCGGCGCTGTACCGCGCCACGTCGTACACCGTGCTGAGCACCGACGCGCTGCTGCGGGCCGAGCGCCGCCCGCTGCTGGTGGAGATCCCGTCCCGCCTGCGCGACGCGCTGCAGGCGCTGCTCCGCATGGCGGCCGCGCTGCCCGCGCTGTGGCCCACGCCCAAGCACCTGGCGCACCACGCGCTCAGCTCGCTCAACACCCTGGAGTGCACCTCGCCCCTCACCTACGACCCTTTCGGTACTCTAGTGGCCTTGGTGCTCTCCGCCCCCTCGCTCTTCTGCAAAGTGGCCGGTCCGGCCCGACCCACTCACCTCGCTCGACAGATATCCCTGCAGGCGTTCAGAGCCAGTATGGTCAAAGCCCTAATTGTGGCCGACCTCACGTCGTGCACCACCGAGGCGATGGAAGAACACGAGGAATATAAAGTCAAGCCCGATTTAGAAAACTTGCTGTCGCTCGTTAAGGAGCTCCGACGCGGGGATTTACCTGATAACCTCGATCCGAATAAAGTCTGGGATCAAATACAGAAACAGTGCCACTCGTTCTTAAGGTGTTGCTGCATATTCTACTACTTCCTCAGCGATATAAACCCGCCCACGGAACTCACAACCGTCGACGGGGACAAGTGGGATATCATGTGCGGGTATCTAGATCTGCCGCTCACTTTCAAGGATTTAATCGACAATCCGAACGGTAGAAAGAAGGCCTTCGCGTGGGCTGCGCTGTCCGGGGACTGGTTCAAGGGCGAGATCCAGGCGAGCGTGGTGCTGGAGCCCAGCGAGCCCCCGCGGCTCGTCCCGCTGCCCGAAGACTTCTCTGAACTGATGAACATCGCTTCGGACTTCCCCTGCCCTAACTCGGACCGCGAGGACAGTAAAAATCCAACGATGTGTCTCGTCTGCGGACAGATCTTATGTTCGCAGAGTTACTGCTGTCAAGCAGAAATTCCAAAGAGCCGCGGCGGGGGCACGGAGCGCGTGGGCGCGGTGGTGTGGCACGCGCTGCGCTGCGGCCGCGGCGCCGGCGTGTTCCTGCGCGTGCGCTCCTGCGAGCTGCTGCTGGTGGCCGCCCCCTCGCGCGGCGCCAAGATGCCCGCACCCTATCTGGACACGTACGGGGAGACCGACCAGGGTCTGTCCCGCGGCAACCCGCTGCATCTGTGCCACGAGCGGTACGAGGCGCTGAGGATCCTGTGGCTCAGCCACGGGGTGCACGAGCGCATCGCCCGCGCCCTCGACACCAACATGCTCGTCATCACCACCTGGCAGAACTTCTGA

Protein

MMMGRLEFDRNHVSVAYKRAQFVLFDVKYLLGSVPASFDDDLRKGFLHGLSLLLNLFVMMQGMDSVVRQVGQHMEYEPEWESAFNLHVKLAQSITMSLEWCAAERPLTASAYRMALRRHAAATAPAPRQLKELGNQSASVIPYDVSVDPVSIHRPLSRYIAGLHLLLHRHGLSYHSPEFDRQDKQKSSPEELIEPVLQTMAMIAQVHAGMWRRNGFALLNQLYFYHNVKCRTEMLDRDVVMLQIGASLIESNEFMIHVLNKYNLLDWASPEFEKQSIEDDTLRHTISMVEEFLGLLITIVGSRHVPGVGEVTNEDRTKKEIIQMLCVKPMPHSELNRCLPEDQLHETGLESVINEVADFVKPTSGTNRGLYKLKSHLYDEYDTFFYHYTREELSRSEEEQRNRRKAAGLSECCPPPVLPKLSPPFSMLAHLLQSDAALLVLRTVLLRALDLRARAFSETQVHKALHLMGYAIRDEESGHYEFLAFAESANRCGLVALLQKLVASPRVDAHRHLAKWVLTRIKALLGETDDQDEQKMETDQEEKPNAAEAEAEKERRAKLAAERRAKVMAQMKTQMKNFISNNATLFEETNTEVTAEEQDLRPLYCGAALGVWGGGVPEPPRVCIMCQEEARVDGTGEPLVLVAFVQQSGVLSRIRDAGDNERSRDAWLPAGIRPQPHVSSCGHALHARCCRNYVDAVLEKENRRPYRGRQPAAFDVEKKEYLCPLCERLCNTALPLLPSPALPGGTPPPLTEEMYNDAVNLILKLKHQVCSESVHVCTEFCEEMHCQARARSVGAMSSDMEEESADEAEVYVSTHSENLLSPEFLVHFEGEVPQYNELTKTLIEEFASVLPASEYGGMASTAALYRATSYTVLSTDALLRAERRPLLVEIPSRLRDALQALLRMAAALPALWPTPKHLAHHALSSLNTLECTSPLTYDPFGTLVALVLSAPSLFCKVAGPARPTHLARQISLQAFRASMVKALIVADLTSCTTEAMEEHEEYKVKPDLENLLSLVKELRRGDLPDNLDPNKVWDQIQKQCHSFLRCCCIFYYFLSDINPPTELTTVDGDKWDIMCGYLDLPLTFKDLIDNPNGRKKAFAWAALSGDWFKGEIQASVVLEPSEPPRLVPLPEDFSELMNIASDFPCPNSDREDSKNPTMCLVCGQILCSQSYCCQAEIPKSRGGGTERVGAVVWHALRCGRGAGVFLRVRSCELLLVAAPSRGAKMPAPYLDTYGETDQGLSRGNPLHLCHERYEALRILWLSHGVHERIARALDTNMLVITTWQNF

Uniprot

H9JI75   A0A2H1VG67   A0A3S2LFD2   A0A194PYZ4   A0A212F3D3   A0A2A4J1D4   + More
A0A0N0PAI9   A0A1Y1LPA2   D1ZZM2   A0A026VTD2   A0A3L8DSS3   U4UDA6   N6TMT9   A0A154P6P7   A0A0L7QWM1   A0A1J1HTL0   I3JJG1  

Pubmed

19121390    26354079    22118469    28004739    18362917    19820115    + More
24508170    30249741    23537049    25186727   

EMBL

BABH01022336    BABH01022337    BABH01022338    ODYU01002372    SOQ39786.1    RSAL01000021    + More
RVE52549.1    KQ459585    KPI98258.1    AGBW02010576    OWR48249.1    NWSH01004221    PCG65334.1    KQ461193    KPJ07004.1    GEZM01054746    JAV73426.1    KQ971338    EFA01832.1    KK108326    EZA46756.1    QOIP01000004    RLU23362.1    KB632308    ERL91944.1    APGK01029140    APGK01029141    KB740725    ENN79348.1    KQ434827    KZC07599.1    KQ414713    KOC62966.1    CVRI01000014    CRK89814.1    AERX01045977    AERX01045978    AERX01045979    AERX01045980    AERX01045981    AERX01045982    AERX01045983    AERX01045984    AERX01045985    AERX01045986   

Proteomes

UP000005204    UP000283053    UP000053268    UP000007151    UP000218220    UP000053240    + More
UP000007266    UP000053097    UP000279307    UP000030742    UP000019118    UP000076502    UP000053825    UP000183832    UP000005207   

PRIDE

H9JI75   

Pfam

PF02207   zf-UBR        + More
PF02617   ClpS

Interpro

IPR042065   E3_ELL-like        + More
IPR036390   WH_DNA-bd_sf       
IPR039164   UBR1-like       
IPR003126   Znf_UBR       
IPR014719   Ribosomal_L7/12_C/ClpS-like       
IPR003769   ClpS_core       

SUPFAM

SSF46785   SSF46785        + More
SSF54736   SSF54736       

Gene 3D

1.10.10.2670     3.30.1390.10    

ProteinModelPortal

H9JI75   A0A2H1VG67   A0A3S2LFD2   A0A194PYZ4   A0A212F3D3   A0A2A4J1D4   + More
A0A0N0PAI9   A0A1Y1LPA2   D1ZZM2   A0A026VTD2   A0A3L8DSS3   U4UDA6   N6TMT9   A0A154P6P7   A0A0L7QWM1   A0A1J1HTL0   I3JJG1  

KEGG

101735857    K10626 E3 ubiquitin-protein ligase UBR2 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase UBR1-li

GO

GO:0071596   GO:0061630   GO:0008270   GO:0016874   GO:0016567   GO:0005737   GO:0000151  

PANTHER

PTHR21497  

Length:

1286

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.648479999999999

Exp number, first 60 AAs:

0.51269

Total prob of N-in:

0.03172

outside

1  -  1286

 

 

Pi

238.980162

Theta

171.500211

Tajima's D

1.341817

CLR

0.150982

CSRT

0.743862806859657

Interpretation

Uncertain