Silkworm Genome Informatics Database

Gene

KWMTBOMO08360

Pre Gene Modal

BGIBMGA009277

Annotation

hypothetical_protein_KGM_12871_[Danaus_plexippus]

Location

Bomo_Chr14(+):6510877-6514364 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.278

CDS

ATGTGTTCCAATACTCTACCAAAAGAGTTTGAGAAGAAATCTGAGGTATTACCTTTTACTAAATATGGATTGTCTTCTATCGAAGAATTCAGTCGGGCAGAGGAAGAAGTGCGGCATTTAGAGTTACTGAAAAAAGCGGGTTTGACTACTGACGAGATCAAACTATATCAAGAGAATGAATGTGGTAAATTAAATCAGCAAAATAAAGTTGAGACGGGTGTGTTAAAGCAAAAATTGCATTATATTTACACAAGAATACAAAATCTTAAAGAGCAAGTAAAACAACAAAATAATCAACCTTCTACATCTAAAACTGATGTATCAATAAAGAATTTAGAGAGAAACATACCTAAAAACACATATTGTGATGGACATCCTATGAATGATATAAAAACTTTAGAGAATTGTCTCTTTGCGCATCTTAAGGACGACATTTTACCTTTGAGCAAAAGAAGAAAACTATTACGACGTTTAGAACGTAAAAAAGAAAGAATTTTATCTCAGAATAACACAGTTATACTTGATAACTCAAATAGAAAACCAGTAAATCGTCCAGGCAGCCTTTGGGATGTTAAAGAACTGCAACATAAGATAAGTGATCCAGAAAGAAATAAAGATAAACTCATTGGACCAGTAAAAAAGACATTATATACTATTAAAAATAATAAAATCGTAAGATTAGAGCCAATGGATTCTTCAGAAAATAGTGAAGACGAGTACAGAGCAGTCAATATTGTAGTGCCTATAAACAATGCAGAGGCACAATTGCTTGAGGGCACAAAAATGAGTATAGATGATATCAAGAAAATTGATAGATTTAAAGATTATGAACCTGGTACACCTTCAAAGGTTTTATATTTGAAGAATATAGCACCAACGGTGACACAACAACAATTGTCTGTGCTCTTCAATCAGTTTGTATTGGACAACGGTGGGCCTATTGATGTTCGACTTATGACTGGTCGAATGAGAGGGCAAGCTTTTGTGCGATTCCAAAATGAGAACTTAGCTATACAGGCGCTAACAGAAATAAATGGTACAATTGTATGTGGTCGTCCCATCATAGCACAATTCGGACGAAATACCAACAGGGTACAGCGCCACGAGCGTTAA

Protein

MCSNTLPKEFEKKSEVLPFTKYGLSSIEEFSRAEEEVRHLELLKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYCDGHPMNDIKTLENCLFAHLKDDILPLSKRRKLLRRLERKKERILSQNNTVILDNSNRKPVNRPGSLWDVKELQHKISDPERNKDKLIGPVKKTLYTIKNNKIVRLEPMDSSENSEDEYRAVNIVVPINNAEAQLLEGTKMSIDDIKKIDRFKDYEPGTPSKVLYLKNIAPTVTQQQLSVLFNQFVLDNGGPIDVRLMTGRMRGQAFVRFQNENLAIQALTEINGTIVCGRPIIAQFGRNTNRVQRHER

Uniprot

A0A2A4JIU0 A0A2H1VVQ9 A0A0N1PGL9 A0A194PZS4 A0A212F5W7 A0A437BNC0 + More
A0A1E1WE93 A0A067RQ13 A0A2P8XUL1 A0A1Y1L8Y8 A0A1B6DU87

Pubmed

26354079 22118469 24845553 29403074 28004739

EMBL

NWSH01001237 PCG72015.1 ODYU01004737 SOQ44931.1 KQ461193 KPJ06989.1 + More
KQ459585 KPI98244.1 AGBW02010120 OWR49127.1 RSAL01000028 RVE51841.1 GDQN01005732 JAT85322.1 KK852536 KDR21829.1 PYGN01001321 PSN35686.1 GEZM01065620 JAV68405.1 GEDC01008058 JAS29240.1

Proteomes

UP000218220 UP000053240 UP000053268 UP000007151 UP000283053 UP000027135 + More
UP000245037

Pfam

PF00076 RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

A0A2A4JIU0 A0A2H1VVQ9 A0A0N1PGL9 A0A194PZS4 A0A212F5W7 A0A437BNC0 + More
A0A1E1WE93 A0A067RQ13 A0A2P8XUL1 A0A1Y1L8Y8 A0A1B6DU87

PDB

2CPX E-value=6.78904e-19, Score=231

KEGG

101741512 no KO assigned | (RefSeq) RNA-binding protein 41-like

GO

GO:0003723 GO:0000166 GO:0003676 GO:0030246 GO:0016853 GO:0019318 GO:0051603 GO:0030145 GO:0006412 GO:0016876 GO:0043039

Length:

370

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.08668

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01064

outside

1 - 370

Pi

211.655269

Theta

191.867154

Tajima's D

-0.541875

CLR

0.221119

CSRT

0.235838208089596

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics