Gene

KWMTBOMO08359

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr14(+):6503247-6506157      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.967

CDS

ATGGGGGACGCGGTCATCCTGGCAGGCGATTTAAATTGCCACCACACTAGGTGGAACTGCCATCGCACGAATGTGAACGGTAGGCGTCTCGACGCGTTCATAGACGACCTCACATTCGAAGTATTCAACCCCCCGACCCCCACGTGCTATCCGTACAACGCCGCGCGTCGTCCGAGCACAATAGATCTGGTACTGCTGAGGAACGTAACTCTGCGCTTACGCTCCATCGAGGCAATGTCAGAACTCGACTCAGACCACCGACCTGTCGTCATGCAGCTCGGTCGCCCACTCAACCGCGAACCAGATACGAGGACCATGGTGGATTGGAAGAAGCTGGGCACGTGCTTAGCTGACACCGCTCCACCAATCCTCCCTTGCGGCCCGGATTCAACTCCATCCCCCGAGGATACCGTCGAATCCATAAACATCTTCACTGATCACGTCTCGACGGCGATCATAAGATCCTCGAAACAAGTCGATGTGGAGGACTGCTTCCACCGCATCAGACTTTCCCCCGAACTTAGGGACCTCGTTAGAATTAGAAACGCGGCAATCCGGGCCTACGATCGATATCCCACGGATTCAAACCGGACTCGGATGCGTCGCTTACAGCGGGAGGTCAAATCCCGCTTAAGCGACGCCCGAAACGAAAACTGGGATAGTTATTTAGAAGAACTCGCGCCCACTCACCAAGCATACTGGCAACTAGCTAGGACCCTCAAGTCCGAAACTATAGCCACTATGCCGCCTCTCGTACGCCCCTCAGGCCAACCACCGGCTTACGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTCGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTTCCGAGGTCAAGGAGGCGATCGATAGCCTACAACCACGGAAAGCTCCCGGCTCCGACGGCATCCGCAACCGCGCGCTTAAACTGTTACCAGCCCAACTGATAACGATGTTGGCCACCATATTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCGGACGTTATCGGCATACACAAGCCGGGCAAACCGAAGAACGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCGGCGATAGGCAAACTATACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTATCCGCGAATAAAATTCTTATAGACGAGCAGTTTGGATTCCGCGCCAGACACTCGTGCGTCCATCAAGTGCACCGCCTCACGGAGCACATCTTACTAGGGCTGAACAGGCGGAAACCCATTCCGACAGGAGCCCTCTTCTTCGATATAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAATGCCAGACAGACTCGTGCTCATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATATAGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCTCTCTCCCCGTTACTATTCAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCGGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCCCTCCCGACTATGCGCGTCAATAACCCCGCCCCCGCCGTTCGCCCAATCACGATGTTCGACCAGCCCATACCGTGGGCCCCGAAGGTCAAATATTTAGGCGTCACCCTCGACAGTAGGATGACATTCCGCCCCCACATCAAGACGGTACGCGACCGTGCCGCCTTCATTCTAGGACGTCTCTACCCGATGATATGTAGGCGAAGTAAAATGTCCCTTAGAAATAAGGTGACACTCTACAAAACTTGCATACGCCCCGTCATGACCTATGCAAGTGTAGTGTTCGCTCACGCGGCCCGCATACACTTAAAATCCTTTCAAATTATTCAATCCCGTTTTTGCAGGATAGCCGTCGGAGCCCCGTGGTTCGTCAGGAACGTCGACCTCCATGACGACCTGGACTTAGAGTCCATCAGTAAGTATCTGCAGTCGGCGTCCATGCGCCACTTCGATAAAGCGGCACGACACGAGAACCCTCTCATCGTGGCCGCCGGTAACTACATTCCCGATCCTGCGGACAGAATGGAAAGCAGTCGACGTCGCCCTAAACACGTCATCTCGGATCCTCCTGATCCACTAACGGTGCTTTTAGAAATATAA

Protein

MGDAVILAGDLNCHHTRWNCHRTNVNGRRLDAFIDDLTFEVFNPPTPTCYPYNAARRPSTIDLVLLRNVTLRLRSIEAMSELDSDHRPVVMQLGRPLNREPDTRTMVDWKKLGTCLADTAPPILPCGPDSTPSPEDTVESINIFTDHVSTAIIRSSKQVDVEDCFHRIRLSPELRDLVRIRNAAIRAYDRYPTDSNRTRMRRLQREVKSRLSDARNENWDSYLEELAPTHQAYWQLARTLKSETIATMPPLVRPSGQPPAYDDDDKAELLADALQEQCTTSTQHADPEHTEFVDREVERRASLPPSDALPPITTSEVKEAIDSLQPRKAPGSDGIRNRALKLLPAQLITMLATILNAAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGMPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTMRVNNPAPAVRPITMFDQPIPWAPKVKYLGVTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPKHVISDPPDPLTVLLEI

Uniprot

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNJ2   V5GNF3   A0A023EZE6   A0A2S2QEE0   A0A023EYS8   Q07995   X1WLB2   A0A224XF24   A0A3N5Z7I3   J9KKL3   A0A2S2PPK8   A0A2S2PR14   A0A2S2NGV8   A0A2S2Q383   A0A2J7R7D0   A0A2M4BEF4   A0A2M4BEZ9   A0A2M4BDA5   A0A2M4BD62   A0A2M4BD66   A0A224XB44   A0A1Y1LKN6   A0A2M4CV42   A0A2M4CV52   A0A224X6S1   A0A2S2P698   J9LC21   A0A2J7PDM0   J9M522   A0A224X6Q4   A0A2S2N814   A0A1B6EGD8   A0A2S2R9D4   A0A2M4BD67   A0A2S2PX53   A0A2J7PVX3   D7GYA5   A0A087UGF5   A0A2M4BDV6   X1WZH0   A0A2S2NPG3   X1WNI2   A0A1Y1KFR3   A0A2H8TF37   A0A0L0CBP5   A0A0A9YJ00   A0A2M4BD83   A0A0A9YU04   Q8T9X4   A0A224X6T4   Q8I7P8   K7IN67   A0A2H8U0H5   A0A2J7QB68   A0A2A4K918   J9KLB1   A0A224X6U5   A0A2S2Q352   A0A2S2PHL7   A0A0J7MYU2   J9KC83   A0A224XI99   J9JS95   A0A2J7R8R8   A0A023F069   A0A2S2PA10   A0A224X6R6   A0A2J7QR37   A0A069DZL8   A0A069DX78   J9KSK5   A0A2J7PBY3   A0A2S2PBB4   A0A2J7QY69   A0A2S2NH02   A0A2J7RD70   A0A224XJI0   A0A2J7PQB5   A0A2S2N6Q7   A0A2A4IUM2   A0A352X8G4   A0A023F6S4   D7EM17   A0A2S2PJG2  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
25474469    8387152    30086797    26108605    25401762    20075255    26334808    30148503   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GALX01005359    JAB63107.1    GBBI01004571    JAC14141.1    GGMS01006359    MBY75562.1    GBBI01004395    JAC14317.1    S59870    AAB26437.2    ABLF02042518    ABLF02057746    GFTR01008038    JAW08388.1    RPOV01000134    RPJ78669.1    ABLF02029306    ABLF02029314    ABLF02060138    GGMR01018716    MBY31335.1    GGMR01019198    MBY31817.1    GGMR01003407    MBY16026.1    GGMS01002992    MBY72195.1    NEVH01006736    PNF36716.1    GGFJ01002256    MBW51397.1    GGFJ01002257    MBW51398.1    GGFJ01001842    MBW50983.1    GGFJ01001843    MBW50984.1    GGFJ01001844    MBW50985.1    GFTR01008262    JAW08164.1    GEZM01053022    JAV74219.1    GGFL01005012    MBW69190.1    GGFL01004957    MBW69135.1    GFTR01008271    JAW08155.1    GGMR01012305    MBY24924.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01026386    PNF14434.1    ABLF02024246    GFTR01008279    JAW08147.1    GGMR01000676    MBY13295.1    GEDC01000337    JAS36961.1    GGMS01017365    MBY86568.1    GGFJ01001858    MBW50999.1    GGMS01000737    MBY69940.1    NEVH01020940    PNF20481.1    KQ973363    EFA13335.2    KK119692    KFM76444.1    GGFJ01001857    MBW50998.1    ABLF02034467    GGMR01006408    MBY19027.1    ABLF02008153    ABLF02008462    ABLF02008464    GEZM01084969    JAV60363.1    GFXV01000908    MBW12713.1    JRES01000644    KNC29657.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GGFJ01001822    MBW50963.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    AF456125    AAL57609.1    GFTR01008261    JAW08165.1    AY180919    AAN87272.1    GFXV01007093    MBW18898.1    NEVH01016302    PNF25823.1    NWSH01000032    PCG80496.1    ABLF02040174    ABLF02040183    ABLF02055266    GFTR01008251    JAW08175.1    GGMS01002955    MBY72158.1    GGMR01016296    MBY28915.1    LBMM01013518    KMQ85605.1    ABLF02033757    GFTR01008256    JAW08170.1    ABLF02028535    ABLF02028545    NEVH01006721    PNF37225.1    GBBI01003810    JAC14902.1    GGMR01013409    MBY26028.1    GFTR01008269    JAW08157.1    NEVH01011985    PNF31054.1    GBGD01000415    JAC88474.1    GBGD01000389    JAC88500.1    ABLF02014118    ABLF02014121    ABLF02054790    NEVH01027074    PNF13841.1    GGMR01014053    MBY26672.1    NEVH01009134    PNF33528.1    GGMR01003864    MBY16483.1    NEVH01005295    PNF38784.1    GFTR01008257    JAW08169.1    NEVH01022639    PNF18527.1    GGMR01000226    MBY12845.1    NWSH01007753    PCG62823.1    DNOY01000259    HBE18313.1    GBBI01001646    JAC17066.1    KQ973412    EFA12510.2    GGMR01016905    MBY29524.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000054359    UP000037069    + More
UP000002358    UP000218220    UP000036403   

PRIDE

Q9XXW0    Q93137    Q9BPQ0    Q8T9X4    Q8I7P8   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139WA11   A0A139W8G9   V5GNJ2   V5GNF3   A0A023EZE6   A0A2S2QEE0   A0A023EYS8   Q07995   X1WLB2   A0A224XF24   A0A3N5Z7I3   J9KKL3   A0A2S2PPK8   A0A2S2PR14   A0A2S2NGV8   A0A2S2Q383   A0A2J7R7D0   A0A2M4BEF4   A0A2M4BEZ9   A0A2M4BDA5   A0A2M4BD62   A0A2M4BD66   A0A224XB44   A0A1Y1LKN6   A0A2M4CV42   A0A2M4CV52   A0A224X6S1   A0A2S2P698   J9LC21   A0A2J7PDM0   J9M522   A0A224X6Q4   A0A2S2N814   A0A1B6EGD8   A0A2S2R9D4   A0A2M4BD67   A0A2S2PX53   A0A2J7PVX3   D7GYA5   A0A087UGF5   A0A2M4BDV6   X1WZH0   A0A2S2NPG3   X1WNI2   A0A1Y1KFR3   A0A2H8TF37   A0A0L0CBP5   A0A0A9YJ00   A0A2M4BD83   A0A0A9YU04   Q8T9X4   A0A224X6T4   Q8I7P8   K7IN67   A0A2H8U0H5   A0A2J7QB68   A0A2A4K918   J9KLB1   A0A224X6U5   A0A2S2Q352   A0A2S2PHL7   A0A0J7MYU2   J9KC83   A0A224XI99   J9JS95   A0A2J7R8R8   A0A023F069   A0A2S2PA10   A0A224X6R6   A0A2J7QR37   A0A069DZL8   A0A069DX78   J9KSK5   A0A2J7PBY3   A0A2S2PBB4   A0A2J7QY69   A0A2S2NH02   A0A2J7RD70   A0A224XJI0   A0A2J7PQB5   A0A2S2N6Q7   A0A2A4IUM2   A0A352X8G4   A0A023F6S4   D7EM17   A0A2S2PJG2  

PDB

6AR3     E-value=0.00125321,     Score=102

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519  

Length:

807

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.39248

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00146

outside

1  -  807

 

 

Pi

31.390554

Theta

44.156388

Tajima's D

0.834395

CLR

0.326955

CSRT

0.615269236538173

Interpretation

Uncertain