Silkworm Genome Informatics Database

Gene

KWMTBOMO08352

Pre Gene Modal

BGIBMGA009275

Annotation

PREDICTED:_transient-receptor-potential-like_protein_[Amyelois_transitella]

Location

Bomo_Chr14(+):6415247-6421732 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.717

CDS

ATGAGCTACTTCGAGGAGAGTGCTACTCTACCACCACCATTTAATATCATGCCAACTCCGAAACTCTTCCTAAAGGTGCTTGGACTCCGAAAGAAGGATAAATTAAGAAAGATGAAATTAAAGGAACAAAAAGAAAAAGAACACGATGTCCGTTACACGGCAGTGATGCGTGCGCTGGTCTGGCGATACGTCTCCGCCATGCACAGGAAGATGGACGATGAGCCAGTGACAGAAGACGATATCAACGAGCTGAAAGGAGACGTGTCAGCGTTGCGATATGAACTCCTCGAAGTGTTCGATAGGAACGGAATGGATGTATCCTTCACTGACAAAAAAGAAAAGACTGTTCTCGGCAGCAAGCAAAAAGTTTGGGAGCGACGTCTAATGAAAGACTTCCAAATTGCCGTGGCGGGAGTCGAAGAGGAGAAGCCTGCAAATGAAGATGGACTCTCTAGGTTCCGCAGGATTGCCAAGATGGCGATCGCAAATACTACCAACGCTAAATGGGACCAGACCCTGGCGGGAACGGGTATTTCATCTCAAATCGGACGTTGTCGCAGTCGGGAATCCTTCAAGAATCAACAGAATCTACAGCGCGCTATGGAAGAGGCCAGAAAACTTGTCTTACGGTCTCCCCTACCAGGTTCTCGCGCCGGTACTCCTATAGAAATGCCAGTGACTCCCGGACACACCCTGCTGGAGCTGATAAAAGATATCTCAACTGAAGTAGGAGAGCCAGTCGACATTAATTCTCCTGCCACTAAATCCCCTATGAAAGTTTCAGGAGAAGATACAGCTGGACTCCTACTGTCTGCTGGTGGAGCAAGTCGACCTATCACTCCCAAGCCACGTACTCCAAGTCCTGTGCCTCCCAAGCCACTGGCGAAAGCGGCCTCGCCTGATCCATCATCACGGGGACCTAGCCCAGTGCCTAAAGTAGTCAGTCCGGTACGCGAGTCATCAAGTCCTGTGCCAAAATTGAGCAGCCCCACTCCTGAGGGAGCGACTTCTCCACAACCTGAACCAAGTCCACTGAAGGCAAAACGTGTTACCGGCGAATCACCTCCGAAGGTTATCAAAAGGAAAACACCAGGACCCCCGTCACAAGGTGACCACCAGGCGTCAGAAACAACTGTAGATGACGGTAAGACGCCAGAGGATATAGCCGTCGCGAGACCAGTAGCCCCGGAGATCAAGCCTACTGAAGGTGCCATACCGCCTCCTCCACCGCCGCCAAGCAAACCAAAGTGA

Protein

MSYFEESATLPPPFNIMPTPKLFLKVLGLRKKDKLRKMKLKEQKEKEHDVRYTAVMRALVWRYVSAMHRKMDDEPVTEDDINELKGDVSALRYELLEVFDRNGMDVSFTDKKEKTVLGSKQKVWERRLMKDFQIAVAGVEEEKPANEDGLSRFRRIAKMAIANTTNAKWDQTLAGTGISSQIGRCRSRESFKNQQNLQRAMEEARKLVLRSPLPGSRAGTPIEMPVTPGHTLLELIKDISTEVGEPVDINSPATKSPMKVSGEDTAGLLLSAGGASRPITPKPRTPSPVPPKPLAKAASPDPSSRGPSPVPKVVSPVRESSSPVPKLSSPTPEGATSPQPEPSPLKAKRVTGESPPKVIKRKTPGPPSQGDHQASETTVDDGKTPEDIAVARPVAPEIKPTEGAIPPPPPPPSKPK

Similarity

Belongs to the transient receptor (TC 1.A.4) family.

Uniprot

H9JIC5 A0A2A4J004 A0A2W1BEA8 A0A3S2NXY7 A0A2H1VJD0 A0A194PY19 + More
A0A212EMA8 A0A0N1IFM8 A0A1B6LZM0

Pubmed

19121390 28756777 26354079 22118469

EMBL

BABH01022308 BABH01022309 NWSH01004108 PCG65487.1 KZ150121 PZC73178.1 + More
RSAL01000028 RVE51848.1 ODYU01002876 SOQ40906.1 KQ459585 KPI98236.1 AGBW02013881 OWR42591.1 KQ460997 KPJ10050.1 GEBQ01010897 JAT29080.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053268 UP000007151 UP000053240 + More

PRIDE

H9JIC5

Pfam

PF00520 Ion_trans + More
PF08344 TRP_2

Interpro

IPR005821   Ion_trans_dom        + More
IPR002153   TRPC_channel
IPR002110   Ankyrin_rpt
IPR013555   TRP_dom
IPR020683   Ankyrin_rpt-contain_dom
IPR036770   Ankyrin_rpt-contain_sf

SUPFAM

SSF48403 SSF48403

Gene 3D

1.25.40.20

CDD

cd00204 ANK

ProteinModelPortal

H9JIC5 A0A2A4J004 A0A2W1BEA8 A0A3S2NXY7 A0A2H1VJD0 A0A194PY19 + More
A0A212EMA8 A0A0N1IFM8 A0A1B6LZM0

PDB

6G1K E-value=4.80298e-12, Score=172

KEGG

101735306 K13803 transient-receptor-potential-like protein | (RefSeq) transient-receptor-potential-like protei

GO

GO:0005262 GO:0016021 GO:0016020 GO:0006811

PANTHER

PTHR10117

Length:

416

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04454

Exp number, first 60 AAs:

0.04414

Total prob of N-in:

0.00287

outside

1 - 416

Pi

136.438114

Theta

150.826062

Tajima's D

0.435838

CLR

0

CSRT

0.493925303734813

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics