Silkworm Genome Informatics Database

Gene

KWMTBOMO08348

Pre Gene Modal

BGIBMGA009272

Annotation

PREDICTED:_transient_receptor_potential_protein_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr14(+):6382127-6384735 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.466

CDS

ATGGAAAGAAGAATACTGAAAGACTTCCAAATTGGAATCGTAGAAGGAATAATCAAAGATGTAATATCCAAAGAGAATAAACCTAAGGATGTATTTAGTCAGATAGCGAAAGCTATTGTCAGAAGGTCAAGCACAGATAGCAAAAAACGTGATTGGAACGCTCTGGTTCGAACTAATACAGTACGCAGGGATCCTATCGGTACCGCCGCTGAAGCTGAAATACGAAGAAGTAGACAATCCCTAAGAGCTCATATCTTAGAAAATGTTCAAAGTCGTACCATTGACCCACAGAAGCTACTACAATACAATCCCAAACTATCAGAGCTGACACCTACTACGAGAGTTGCTTATGCCAAGTTTATGAGAAGCAAGCTTAGGTCCGATTTTAGTGAAAAAGAGCGAAACAAGCGAAAATCTGATGAATCAAGTCTCGACGGCGAAGATTTCAATGACGAAGTCCTCGAAGCTCCACAAAGACATGACCAAAAGCGACCAGTTCGATCGTTTCGTAGCCGAACACCCATACCAGAAATGTCAGACGATGAAGGACTTAGAGAAAACGAAATTACAATCGAAGTCGACGTTGAAGACCAAGTTTCAGATACAGACTCAATCAAGACAAAACCCTTGAAAATATATTCTGGAGATCATACAGAACCGAACACACCATCTATGGATGGAAACTATCATCATTTCCCATCACCAGAATCCCAAGATCATGTAATACAAATCGAACCCGATACACCCACCAAAAACCTCTTACTTATGAAGGAAGAAGAACGTAACTTACAAGACCCAACAGCTAAATCTCCTAGTTTAAAACAAAATGAACAAATATTATCAGCTTCTGCTTTAGAATCTCAATATACACAAGCAAGCTCTTCACGAACGTCAATCACTAAAGGGGGAACTGAAAAACTCCCATATAAATCATGTTTGAAATACACGAATGACACTCCAAAAAATGTAGAGTCTGCAATACCTAGCACATCAAGGTTGTCAAGAAAAGATTCTAAATTGGTTTCAGCCTCTTTACAGTCACAAATGGCTCCATCTAGATTTTCTCAGAGCAACGTAACTAAATCTCCCGATAAATCATTAGCTAGTTCTAAAACTTCAAGTCCCAAATCGTTGAGTCCGAGGTCACCCAGAGTTGTGCCTTCGTCTCCAACACCTTCTATAATGTCAGCGGGTAAAGGAAAATCCAAAGCTACTGGGCGAATAGTTTCTGGGTGGCTTTGA

Protein

MERRILKDFQIGIVEGIIKDVISKENKPKDVFSQIAKAIVRRSSTDSKKRDWNALVRTNTVRRDPIGTAAEAEIRRSRQSLRAHILENVQSRTIDPQKLLQYNPKLSELTPTTRVAYAKFMRSKLRSDFSEKERNKRKSDESSLDGEDFNDEVLEAPQRHDQKRPVRSFRSRTPIPEMSDDEGLRENEITIEVDVEDQVSDTDSIKTKPLKIYSGDHTEPNTPSMDGNYHHFPSPESQDHVIQIEPDTPTKNLLLMKEEERNLQDPTAKSPSLKQNEQILSASALESQYTQASSSRTSITKGGTEKLPYKSCLKYTNDTPKNVESAIPSTSRLSRKDSKLVSASLQSQMAPSRFSQSNVTKSPDKSLASSKTSSPKSLSPRSPRVVPSSPTPSIMSAGKGKSKATGRIVSGWL

Similarity

Belongs to the transient receptor (TC 1.A.4) family.

Uniprot

H9JIC2 A0A2W1BK16 A0A437BN04 A0A0N1PKC9 A0A194Q499 A0A212EM62 + More
A0A2A4J097

Pubmed

19121390 28756777 26354079 22118469

EMBL

BABH01022307 BABH01022308 KZ150121 PZC73176.1 RSAL01000028 RVE51850.1 + More
KQ459786 KPJ19923.1 KQ459585 KPI98235.1 AGBW02013881 OWR42590.1 NWSH01004108 PCG65485.1

Proteomes

UP000005204 UP000283053 UP000053240 UP000053268 UP000007151 UP000218220 + More

PRIDE

H9JIC2

Pfam

PF08344   TRP_2        + More
PF00520   Ion_trans
PF12796   Ank_2
PF00088   Trefoil
PF00023   Ank

Interpro

IPR002110   Ankyrin_rpt        + More
IPR013555   TRP_dom
IPR002153   TRPC_channel
IPR005821   Ion_trans_dom
IPR020683   Ankyrin_rpt-contain_dom
IPR036770   Ankyrin_rpt-contain_sf
IPR017957   P_trefoil_CS
IPR000519   P_trefoil_dom

SUPFAM

SSF48403 SSF48403

Gene 3D

1.25.40.20

CDD

cd00204 ANK
cd00111 Trefoil

ProteinModelPortal

H9JIC2 A0A2W1BK16 A0A437BN04 A0A0N1PKC9 A0A194Q499 A0A212EM62 + More
A0A2A4J097

KEGG

101740441 K04967 transient receptor potential cation channel subfamily C member 4 | (RefSeq) transient recepto

PATHWAY

04745 Phototransduction - fly - Bombyx mori (domestic silkworm)

GO

GO:0016021 GO:0005262

PANTHER

PTHR10117

Length:

413

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01176

outside

1 - 413

Pi

224.973047

Theta

178.631134

Tajima's D

0.977254

CLR

0.210336

CSRT

0.656817159142043

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics