Gene

KWMTBOMO08347

Pre Gene Modal

BGIBMGA009272

Annotation

PREDICTED:_transient_receptor_potential_protein_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr14(+):6377787-6381349      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.957

CDS

ATGTGGTATTATGCTGAACTAGAAAAAGACAAATGTTACCACCTTCCAAATGGGTTGCCAGATTTCGATGGGCAAGAAAGAGCCTGTTCAATTTGGAGAAGATATGCTAATTTGTTCGAGACCTCTCAGTCGCTGTTCTGGGCTTCTTTTGGGCTCGTCGATTTGACGACGTTCGAGTTGACCGGTATCAAAAGTTTTACAAGATTTTGGGCTCTTCTGACTTTTGGATCGTATTCCGTTATTAACATAATAGTCCTGCTCAACATGCTGATTGCCATGATGTCGAACTCATATCAAATAATTTCCGAACGAGCGGATACTGAATGGAAATTCGCCCGCAGTAATCTTTGGATGTCTTACTTCGAAGATGGCGACACCGTCCCGCCGCCGTTCAACATCATACCGACGCCAAAGCATTTCTTTTGCTGGATCAAAAGCTATTTTAACAAACGAGAAAGGCGTTCAATACTCAACAAATCTCGTGAAAAAGCTAGACAGGAACACGAAGCGGTAATGAGGATATTAGTCAGAAGATACGTGACAGCAGAACAAAGGGCTAGAGATGAAGTAGGAGTCACGGAGGATGACGTTATGGAGATCCGTCAAGATATATCCACACTCAGATACGAGCTCATTGATATACTGCATAACAATGGAATGAAGACACCAAGAGTCAGCTTGCAGGATACTGCCGGTAATAATTATAATCTTAAAATTTCGAATTATCTACACTACCCGATGATTGTTTAA

Protein

MWYYAELEKDKCYHLPNGLPDFDGQERACSIWRRYANLFETSQSLFWASFGLVDLTTFELTGIKSFTRFWALLTFGSYSVINIIVLLNMLIAMMSNSYQIISERADTEWKFARSNLWMSYFEDGDTVPPPFNIIPTPKHFFCWIKSYFNKRERRSILNKSREKARQEHEAVMRILVRRYVTAEQRARDEVGVTEDDVMEIRQDISTLRYELIDILHNNGMKTPRVSLQDTAGNNYNLKISNYLHYPMIV

Similarity

Belongs to the transient receptor (TC 1.A.4) family.

Uniprot

H9JIC2   A0A2H1VJJ5   A0A2H1VZ28   A0A2A4J1C2   A0A2A4J032   A0A2W1BK16   + More
A0A437BN04   A0A194Q499   A0A212EM62   A0A1B6EEM2   A0A1B6D2D8   A0A0C9R7U6   A0A0C9QH65   U4UUV8   A0A0J7NDJ6   A0A182XBR3   K7J2P6   N6TRC9   A0A0N0U7F9   N6TWB0   A0A2J7PZ35   A0A182UDG9   Q17A16   A0A1S4FAK9   A0A182RQ80   A0A182FIQ9   A0A182LT00   A0A182YK11   A0A182N0R8   A0A182GH52   A0A182T490   A0A1S4G9C1   A0A182KCS2   A0A182PV03   Q7PS36   A0A182HMZ4   A0A182QF93   A0A182W588   A0A084VN48   A0A336MTI6   A0A154PFZ3   A0A2A3E6M6   A0A182JIJ2   A0A087ZR90   A0A232EFJ4   A0A3L8D5X4   A0A026VYU6   B0XHC6   A0A1W4WU54   E2BPR3   A0A1Q3FSE9   A0A2P8Y1V1   A0A1B6FTI6   E1ZZG0   A0A336MBJ8   A0A146KZM0   A0A151XBS4   A0A195FV57   A0A158NY16   M4N9S2   A0A1B6LAJ0   F4WNP5   A0A0B4VRY1   A0A195B7N8   A0A310SA84   A0A195EC27   A0A384THF3   A0A1J1HYQ2   A0A139WIM8   A0A2S2QNH1   A0A0L7KHH4   A0A2H8TTI6   A0A1I8NT53   A0A1B0BW76   A0A1A9XVK1   A0A1A9WYZ7   A0A1B0GFC1   A0A1B0AJS8   A0A1I8PGE5   Q94447   A0A3B0K5L0   A0A1I8MDK6   A0A1A9VFI0   T1P894   A0A0M4ERZ4   A0A0L0CIC2   B4M5X7   A0A1W4UPV3   B4JU24   F0JAI0   A0A2H8TML4   B4K6J2   B4GNE7   Q29C99   B3P828   A0A0A1X868   A0A3B0JEU9   J9KVL3   B4HZH7   U3PXB8  

Pubmed

19121390    28756777    26354079    22118469    23537049    20075255    + More
17510324    25244985    26483478    12364791    24438588    28648823    30249741    24508170    20798317    29403074    26823975    21347285    21719571    25254364    18362917    19820115    26227816    9003779    25315136    26108605    17994087    15632085    25830018   

EMBL

BABH01022307    BABH01022308    ODYU01002911    SOQ40997.1    ODYU01005013    SOQ45484.1    + More
NWSH01004304    PCG65240.1    PCG65239.1    KZ150121    PZC73176.1    RSAL01000028    RVE51850.1    KQ459585    KPI98235.1    AGBW02013881    OWR42590.1    GEDC01000920    JAS36378.1    GEDC01017419    JAS19879.1    GBYB01002831    JAG72598.1    GBYB01002829    JAG72596.1    KB632375    ERL93960.1    LBMM01006483    KMQ90580.1    APGK01007747    APGK01007748    APGK01007749    APGK01007750    KB737435    ENN83024.1    KQ435699    KOX80578.1    APGK01013991    APGK01013992    APGK01013993    APGK01013994    APGK01013995    APGK01013996    KB739168    ENN82358.1    NEVH01020341    PNF21582.1    CH477341    EAT43090.1    AXCM01000046    JXUM01063153    JXUM01063154    KQ562234    KXJ76346.1    AAAB01008846    EAA06236.6    APCN01004943    AXCN02001396    AXCN02001397    ATLV01014688    ATLV01014689    KE524978    KFB39392.1    UFQT01002598    SSX33742.1    KQ434896    KZC10761.1    KZ288375    PBC26701.1    NNAY01004990    OXU17130.1    QOIP01000012    RLU15644.1    KK107558    EZA48978.1    DS233135    EDS28306.1    GL449658    EFN82264.1    GFDL01004514    JAV30531.1    PYGN01001038    PSN38237.1    GECZ01016223    JAS53546.1    GL435343    EFN73452.1    UFQT01000867    SSX27732.1    GDHC01017644    JAQ00985.1    KQ982316    KYQ57836.1    KQ981215    KYN44525.1    ADTU01002882    ADTU01002883    ADTU01002884    KC329816    AGG86916.1    GEBQ01019250    JAT20727.1    GL888237    EGI64238.1    KM280572    AJD25385.1    KQ976565    KYM80531.1    KQ765605    OAD53838.1    KQ979074    KYN22778.1    KX249688    AOR81465.1    CVRI01000020    CRK91249.1    KQ971338    KYB27779.1    GGMS01009469    MBY78672.1    JTDY01009830    KOB62560.1    GFXV01005326    MBW17131.1    JXJN01021660    JXJN01021661    CCAG010009340    Z80230    CAB02410.1    OUUW01000005    SPP80906.1    KA644906    AFP59535.1    CP012526    ALC48014.1    JRES01000338    KNC32158.1    CH940652    EDW59053.1    CH916374    EDV90994.1    BT126022    ADY17721.1    GFXV01003366    MBW15171.1    CH933806    EDW16292.1    CH479186    EDW39273.1    CM000070    EAL26747.2    CH954182    EDV53155.1    GBXI01007439    JAD06853.1    SPP80904.1    ABLF02038759    ABLF02038765    ABLF02038771    CH480819    EDW53434.1    BT150384    AGW52194.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000030742    + More
UP000036403    UP000076407    UP000002358    UP000019118    UP000053105    UP000235965    UP000075902    UP000008820    UP000075900    UP000069272    UP000075883    UP000076408    UP000075884    UP000069940    UP000249989    UP000075901    UP000075881    UP000075885    UP000007062    UP000075840    UP000075886    UP000075920    UP000030765    UP000076502    UP000242457    UP000075880    UP000005203    UP000215335    UP000279307    UP000053097    UP000002320    UP000192223    UP000008237    UP000245037    UP000000311    UP000075809    UP000078541    UP000005205    UP000007755    UP000078540    UP000078492    UP000183832    UP000007266    UP000037510    UP000095300    UP000092460    UP000092443    UP000091820    UP000092444    UP000092445    UP000268350    UP000095301    UP000078200    UP000092553    UP000037069    UP000008792    UP000192221    UP000001070    UP000009192    UP000008744    UP000001819    UP000008711    UP000007819    UP000001292   

PRIDE

H9JIC2    F0JAI0    U3PXB8   

Pfam

PF08344   TRP_2        + More
PF00520   Ion_trans
PF12796   Ank_2
PF00023   Ank
PF00088   Trefoil
PF07898   DUF1676

Interpro

IPR002110   Ankyrin_rpt        + More
IPR013555   TRP_dom       
IPR002153   TRPC_channel       
IPR005821   Ion_trans_dom       
IPR020683   Ankyrin_rpt-contain_dom       
IPR036770   Ankyrin_rpt-contain_sf       
IPR017957   P_trefoil_CS       
IPR000519   P_trefoil_dom       
IPR012464   DUF1676       

SUPFAM

SSF48403   SSF48403       

Gene 3D

1.25.40.20    

CDD

cd00204  ANK
cd00111  Trefoil

ProteinModelPortal

H9JIC2   A0A2H1VJJ5   A0A2H1VZ28   A0A2A4J1C2   A0A2A4J032   A0A2W1BK16   + More
A0A437BN04   A0A194Q499   A0A212EM62   A0A1B6EEM2   A0A1B6D2D8   A0A0C9R7U6   A0A0C9QH65   U4UUV8   A0A0J7NDJ6   A0A182XBR3   K7J2P6   N6TRC9   A0A0N0U7F9   N6TWB0   A0A2J7PZ35   A0A182UDG9   Q17A16   A0A1S4FAK9   A0A182RQ80   A0A182FIQ9   A0A182LT00   A0A182YK11   A0A182N0R8   A0A182GH52   A0A182T490   A0A1S4G9C1   A0A182KCS2   A0A182PV03   Q7PS36   A0A182HMZ4   A0A182QF93   A0A182W588   A0A084VN48   A0A336MTI6   A0A154PFZ3   A0A2A3E6M6   A0A182JIJ2   A0A087ZR90   A0A232EFJ4   A0A3L8D5X4   A0A026VYU6   B0XHC6   A0A1W4WU54   E2BPR3   A0A1Q3FSE9   A0A2P8Y1V1   A0A1B6FTI6   E1ZZG0   A0A336MBJ8   A0A146KZM0   A0A151XBS4   A0A195FV57   A0A158NY16   M4N9S2   A0A1B6LAJ0   F4WNP5   A0A0B4VRY1   A0A195B7N8   A0A310SA84   A0A195EC27   A0A384THF3   A0A1J1HYQ2   A0A139WIM8   A0A2S2QNH1   A0A0L7KHH4   A0A2H8TTI6   A0A1I8NT53   A0A1B0BW76   A0A1A9XVK1   A0A1A9WYZ7   A0A1B0GFC1   A0A1B0AJS8   A0A1I8PGE5   Q94447   A0A3B0K5L0   A0A1I8MDK6   A0A1A9VFI0   T1P894   A0A0M4ERZ4   A0A0L0CIC2   B4M5X7   A0A1W4UPV3   B4JU24   F0JAI0   A0A2H8TML4   B4K6J2   B4GNE7   Q29C99   B3P828   A0A0A1X868   A0A3B0JEU9   J9KVL3   B4HZH7   U3PXB8  

PDB

6G1K     E-value=2.20102e-39,     Score=405

KEGG

101740441    K04967 transient receptor potential cation channel subfamily C member 4 | (RefSeq) transient recepto

GO

GO:0016021   GO:0005262   GO:0016020   GO:0070588   GO:0015279   GO:0051480   GO:0070679   GO:0005887   GO:0034703   GO:0006828   GO:0006811   GO:0007605   GO:0042803   GO:0046982   GO:0008355   GO:0010461   GO:0016027   GO:0008104   GO:0071454   GO:0050908   GO:0035997   GO:0007005   GO:0001895   GO:0008377   GO:0005216   GO:0005839   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039   GO:0055085  

PANTHER

PTHR10117  

Length:

249

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

28.02129

Exp number, first 60 AAs:

4.55519

Total prob of N-in:

0.51181

inside

1  -  68

TMhelix

69  -  91

outside

92  -  249

 

 

Pi

153.611061

Theta

122.623004

Tajima's D

0.754317

CLR

0.080592

CSRT

0.591420428978551

Interpretation

Uncertain