Gene

KWMTBOMO08345

Pre Gene Modal

BGIBMGA009272

Annotation

PREDICTED:_transient_receptor_potential_protein_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr14(+):6353807-6365506      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.61 Extracellular   Reliability : 1.975

CDS

ATGAACCGCGGCTCCAGAGAAGAGCTCCTGGGTAGCTCCCAGGAAGCCCTGAGGAACAGTCAGCATGACCTTCGCTTTACTTGCGAGCGCCCTCTGACAAGAGTCGAGAAGACATATCTGCTGCATGCTGACAGAGGGGACTACGTCACAGTAAAAAGGTTGATTGAGCAGAACCTTGGAAAACCAGAGGTACTGGACATCAACTGTGTGGATCCACTCAATAGGTCGGCCCTCATCGCTGCAATTGAGAACGAGAATATTGAACTCATCAAACTACTTCTTGGATCGGGAATCAAAGTTAAGGATGCTCTGCTCCACGCTATCAAAGAAGAATATGTGGAAGCTGTAGAATTGCTGCTGCAATGGGAAGAGGAACATTATGAGCCTGGAGAACCTTATGAAGGGATAATGCTTCTATGCAAGACTGTCGAGAGAAATCAGCTATCTTGCCGATTAATATACTCGATTCCAATCTAA

Protein

MNRGSREELLGSSQEALRNSQHDLRFTCERPLTRVEKTYLLHADRGDYVTVKRLIEQNLGKPEVLDINCVDPLNRSALIAAIENENIELIKLLLGSGIKVKDALLHAIKEEYVEAVELLLQWEEEHYEPGEPYEGIMLLCKTVERNQLSCRLIYSIPI

Similarity

Belongs to the transient receptor (TC 1.A.4) family.

Uniprot

A0A2H1VJ93   A0A437BN04   A0A2A4J1C2   A0A2W1BK16   A0A2A4J032   A0A0N1PKC9   + More
A0A194Q499   A0A212EM62   A0A1B6E6H8   A0A1B6DBK1   A0A0J7KK40   N6TWB0   U4UUV8   A0A1B6KIV2   A0A2H8TML4   A0A2H8TQN6   A0A384THF3   A0A1B6H849   E1ZZG0   J9KVL3   A0A0B4VRY1   A0A1B6FQL6   E2BPR3   A0A0C9QH65   M4N9S2   A0A0N0U7F9   A0A2P8Y1V1   A0A1S4EAA7   A0A2A3E6M6   A0A3L8D5X4   A0A146KZM0   A0A026VYU6   K7J2P6   A0A087ZR90   A0A2J7PZ24   A0A1D2MWP4   A0A0L0CIC2   A0A1J1HYQ2   E0VB86   A0A0N8B8M1   A0A0P5DRS4   A0A0P5BZ13   A0A0N8BB71   A0A0P5D6N5   B3LYU7   A0A0P6HSS9   A0A0P6ALR9   A0A0P5FVE1   A0A0P5D2G9   A0A1W4UPV3  

Pubmed

28756777    26354079    22118469    23537049    20798317    25254364    + More
29403074    30249741    26823975    24508170    20075255    27289101    26108605    20566863    17994087   

EMBL

ODYU01002858    SOQ40861.1    RSAL01000028    RVE51850.1    NWSH01004304    PCG65240.1    + More
KZ150121    PZC73176.1    PCG65239.1    KQ459786    KPJ19923.1    KQ459585    KPI98235.1    AGBW02013881    OWR42590.1    GEDC01003799    JAS33499.1    GEDC01014250    JAS23048.1    LBMM01006483    KMQ90579.1    APGK01013991    APGK01013992    APGK01013993    APGK01013994    APGK01013995    APGK01013996    KB739168    ENN82358.1    KB632375    ERL93960.1    GEBQ01028595    JAT11382.1    GFXV01003366    MBW15171.1    GFXV01004504    MBW16309.1    KX249688    AOR81465.1    GECU01036923    JAS70783.1    GL435343    EFN73452.1    ABLF02038759    ABLF02038765    ABLF02038771    KM280572    AJD25385.1    GECZ01017264    JAS52505.1    GL449658    EFN82264.1    GBYB01002829    JAG72596.1    KC329816    AGG86916.1    KQ435699    KOX80578.1    PYGN01001038    PSN38237.1    KZ288375    PBC26701.1    QOIP01000012    RLU15644.1    GDHC01017644    JAQ00985.1    KK107558    EZA48978.1    NEVH01020341    PNF21594.1    LJIJ01000448    ODM97382.1    JRES01000338    KNC32158.1    CVRI01000020    CRK91249.1    AAZO01000650    DS235023    EEB10642.1    GDIQ01202091    JAK49634.1    GDIP01153685    JAJ69717.1    GDIP01177990    JAJ45412.1    GDIQ01194891    JAK56834.1    GDIP01165468    JAJ57934.1    CH902617    EDV44063.1    GDIQ01015497    JAN79240.1    GDIP01027505    JAM76210.1    GDIQ01250973    JAK00752.1    GDIP01177989    JAJ45413.1   

Proteomes

UP000283053    UP000218220    UP000053240    UP000053268    UP000007151    UP000036403    + More
UP000019118    UP000030742    UP000000311    UP000007819    UP000008237    UP000053105    UP000245037    UP000079169    UP000242457    UP000279307    UP000053097    UP000002358    UP000005203    UP000235965    UP000094527    UP000037069    UP000183832    UP000009046    UP000007801    UP000192221   

Pfam

PF08344   TRP_2        + More
PF00023   Ank
PF00520   Ion_trans
PF12796   Ank_2
PF00088   Trefoil

Interpro

IPR020683   Ankyrin_rpt-contain_dom        + More
IPR036770   Ankyrin_rpt-contain_sf       
IPR013555   TRP_dom       
IPR002153   TRPC_channel       
IPR002110   Ankyrin_rpt       
IPR005821   Ion_trans_dom       
IPR017957   P_trefoil_CS       
IPR000519   P_trefoil_dom       

SUPFAM

SSF48403   SSF48403       

Gene 3D

1.25.40.20    

CDD

cd00204  ANK
cd00111  Trefoil

ProteinModelPortal

A0A2H1VJ93   A0A437BN04   A0A2A4J1C2   A0A2W1BK16   A0A2A4J032   A0A0N1PKC9   + More
A0A194Q499   A0A212EM62   A0A1B6E6H8   A0A1B6DBK1   A0A0J7KK40   N6TWB0   U4UUV8   A0A1B6KIV2   A0A2H8TML4   A0A2H8TQN6   A0A384THF3   A0A1B6H849   E1ZZG0   J9KVL3   A0A0B4VRY1   A0A1B6FQL6   E2BPR3   A0A0C9QH65   M4N9S2   A0A0N0U7F9   A0A2P8Y1V1   A0A1S4EAA7   A0A2A3E6M6   A0A3L8D5X4   A0A146KZM0   A0A026VYU6   K7J2P6   A0A087ZR90   A0A2J7PZ24   A0A1D2MWP4   A0A0L0CIC2   A0A1J1HYQ2   E0VB86   A0A0N8B8M1   A0A0P5DRS4   A0A0P5BZ13   A0A0N8BB71   A0A0P5D6N5   B3LYU7   A0A0P6HSS9   A0A0P6ALR9   A0A0P5FVE1   A0A0P5D2G9   A0A1W4UPV3  

PDB

5Z96     E-value=3.09214e-09,     Score=142

KEGG

101740441    K04967 transient receptor potential cation channel subfamily C member 4 | (RefSeq) transient recepto

GO

GO:0016020   GO:0005262   GO:0016021   GO:0006811   GO:0035997   GO:0007005   GO:0050908   GO:0008104   GO:0016027   GO:0071454   GO:0001895   GO:0008377   GO:0046982   GO:0042803   GO:0007605   GO:0034703   GO:0008355   GO:0010461  

PANTHER

PTHR10117  

Length:

158

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2e-05

Exp number, first 60 AAs:

0

Total prob of N-in:

0.10292

outside

1  -  158

 

 

Pi

24.915172

Theta

180.327604

Tajima's D

0.577918

CLR

1.157217

CSRT

0.539823008849557

Interpretation

Uncertain