Gene

KWMTBOMO08341

Pre Gene Modal

BGIBMGA006276

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr14(-):6190048-6191626      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.555

CDS

ATGCTGAAGGCTGATGCACCGAGATCTGCAAGCTTGCTATATCCGCTCATCGTAAGGATTTGGGAGACTGAGCAAATACCGTCTCAATGGAAGCAGGGACTACTCGTGAAAGTTCCGAAGAAGGGCGATTTGTCTTCTTGTGACAACTGGAGAGGCATTACACTTCTTCCTTGCGCAGCAAAGGTCTTGGCTAGATTACTTCTAAACCGGATGTCCAAAAAGATCACTGGAACTCTTCGGGAGGAGCAAGCAGGTTTCTTACCGGGCCGATCATGCACAGACCATACAAACACTCTTCGCATCCTCATAGAACAAAGTGTCGAATGGCAGACTGAAATGATTCTTACGTTTGTAGACTTTGAGAAAGCGTTTGACACTGTACAGTGGAGCAAAATGTGGACCTGCTTAAAACAAAGAGGTATACCAAATAAAATCATTGGTATAATCCAGGCCTTATACAGAGGTAGTACATGTAGAGTCGTGCATGACCAAGTCCTGGGAGCCCCTATTGAGATGACAGCGGGTGTTAAGCAGGGCTGCCTCCTGTCTCCGCTACTATTCATTATGTTACTGGATGACATAATGCGGGAAGTGGTGACGACACCTCGGGGCATTGAATGGAGCGAAAATATCTTGGAAGACCTTGACTATGCAGATGACATAGTGTTGATGACGCCAACTTTGGATCAAATGCAAGCAAAACTTGAAGACCTCCGTATATCTGCGGAGAAAAGAGGCTTGCGTATCAACACCAACAAAACTGTCGACATGCGAGTAATGTCAAAAAACACTACTCCCCTAAAGCTCCAAGACTGTGTGTTGAAGTCAGCACAGAAGTTTACATATCTGGGGAGCTCCATATCAAATCAGGGTGGTTCGGACGAAGATATAGAGATACGAATTAGGAAAGCCAGGGGTGCTTTCGCGCAGTTGAAACCAGTCTGGGAGTCAAGTGTCATGACTCGTCGGATCAAGCTGACCCTGTTCGACTCCATTGTCAAGAGTGTTCTCCTGTTCGGATGTGAGACCTGGAGAGTGACCAAGACACTCACGAACCGACTGCAGGTATTTGTAAATAAGTGCTTGAGGTCGATACTCCGCATATACTGGCCAGTCACTATCTCTAATAAAGACCTTTGGACTAAATGCGACCAAAATCCCATCGCGCAAGACATTGCTCATCGGAAATGGCGTTGGATAGGACACACTCTACGGCGCAGCGGAGTCAACGCAGCATCAATCGCGTTTGAGTGGCAACCGCTTGGCAGGAGAAGACCTGGTCGCCCTGTACACACTTGGCGACGCACCGTAGAGAGTGAGATGAGGACTGCCAACGTGACCTGGAGTGATGTCAAGGAGCAAGCGCAAGACAGAGTAAAGTGGAGACAACTTGTGAGGGCCCTATGTACCAGCGGGGTACCCTAG

Protein

MLKADAPRSASLLYPLIVRIWETEQIPSQWKQGLLVKVPKKGDLSSCDNWRGITLLPCAAKVLARLLLNRMSKKITGTLREEQAGFLPGRSCTDHTNTLRILIEQSVEWQTEMILTFVDFEKAFDTVQWSKMWTCLKQRGIPNKIIGIIQALYRGSTCRVVHDQVLGAPIEMTAGVKQGCLLSPLLFIMLLDDIMREVVTTPRGIEWSENILEDLDYADDIVLMTPTLDQMQAKLEDLRISAEKRGLRINTNKTVDMRVMSKNTTPLKLQDCVLKSAQKFTYLGSSISNQGGSDEDIEIRIRKARGAFAQLKPVWESSVMTRRIKLTLFDSIVKSVLLFGCETWRVTKTLTNRLQVFVNKCLRSILRIYWPVTISNKDLWTKCDQNPIAQDIAHRKWRWIGHTLRRSGVNAASIAFEWQPLGRRRPGRPVHTWRRTVESEMRTANVTWSDVKEQAQDRVKWRQLVRALCTSGVP

Uniprot

D7F173   A0A3S0ZUP8   A0A3S1HYS8   A0A433TL31   A0A3S0Z3I7   A0A0K8S889   + More
A0A0R3QDD8   A0A034VWX2   A0A2B4R8E3   A0A2B4RLZ4   A0A2B4SQ50   Q4QQE8   A0A2B4SLP8   A0A183MMK9   A0A183LTI8   C7C207   A0A183KK49   W4XQE1   A0A183N6M3   A0A3S1BSU6   A0A183K757   A0A3S1BKK2   A0A183M158   A0A2B4S265   A0A183FUE5   A0A3P7YP47   A0A183LH64   A0A3P7ZWP0   A0A3S1H9Q0   A0A183K366   A0A183L6R6   A0A183MM50   A0A183MWW8   A0A0A9X4P7   A0A183MBC4   A0A3P8ANK8   A0A183L0L7   A0A183N861   A0A430Q2J0   A0A183MV72   A0A183LB65   A0A2G8LQ85   A0A183LM32   A0A183LZL5   H3B4N3   A0A2G8JGP4   A0A183JXE5   A0A183M8Y6   A0A183N0Z2   A0A3P8DCC0   A0A2B4R8F8   A0A3P8BZD5   A0A183MTP0   A0A3S3QXP3   A0A183L9Q3   A0A433TEI1   A0A183K067   A0A183LQV9   A0A183KVH6   A0A3P8A497   A0A183M3P4   A0A2V3ZRE9   A0A183LL57   A0A3P8AM30   A0A183K4C7   A0A182FVE7   A0A3B3HVR8   A0A183JWU1   A0A183LMQ3   A0A183M420   A0A183LFM6   A0A183LR54   A0A3P7Z778   A0A016U1Y9   A0A183LZY7   A0A419PJT1   A0A3R7JMY9   A0A2S2N6G4   A0A0K8TJE5  

Pubmed

20470440    25348373    15939396    25401762    29023486    9215903    + More
17554307    25730766   

EMBL

FJ265558    ADI61826.1    RQTK01000143    RUS86294.1    RQTK01000073    RUS88821.1    + More
RQTK01000294    RUS82268.1    RQTK01002506    RUS68506.1    GBRD01016432    JAG49394.1    UZAG01003391    VDO15268.1    GAKP01012607    JAC46345.1    LSMT01001244    PFX12648.1    LSMT01000478    PFX17357.1    LSMT01000038    PFX31239.1    BN000794    CAJ00236.1    LSMT01000057    PFX30003.1    UZAI01017336    VDP23465.1    UZAI01002802    VDO74779.1    FN356221    CAX83710.1    UZAK01037594    VDP59172.1    AAGJ04045270    UZAI01020046    VDP49350.1    RQTK01000031    RUS90495.1    UZAK01034022    VDP41775.1    RQTK01000034    RUS90383.1    UZAI01004764    VDO87718.1    LSMT01000205    PFX23506.1    UZAH01027236    VDO89910.1    UZAI01000872    VDO57178.1    RQTK01000780    RUS74991.1    UZAK01033233    VDP35612.1    UZAK01051765    VDP81150.1    UZAI01017296    VDP23041.1    UZAI01018356    VDP36181.1    GBHO01029816    JAG13788.1    UZAI01009733    VDP05700.1    UZAK01045225    VDP73636.1    UZAI01020438    VDP51493.1    QMKO01003083    RTG81912.1    UZAI01018128    VDP33575.1    UZAI01000214    VDO50020.1    MRZV01000013    PIK62384.1    UZAI01001589    VDO63472.1    AFYH01088828    MRZV01002040    PIK34921.1    UZAK01032331    VDP26045.1    UZAI01007972    VDP00733.1    UZAI01018929    VDP41391.1    PFX12647.1    UZAI01017961    VDP31522.1    RJLM01000070    RWX52695.1    UZAI01000099    VDO48517.1    RQTK01000418    RUS79972.1    UZAK01032715    VDP30433.1    UZAI01002257    VDO69787.1    UZAK01041924    VDP67956.1    UZAI01005620    VDO91334.1    QFLI01000039    PXX94708.1    UZAI01001449    VDO62065.1    UZAK01033448    VDP37335.1    UZAK01032269    VDP25249.1    UZAI01001688    VDO64417.1    UZAI01005753    VDO91851.1    UZAI01000669    VDO55444.1    UZAI01002313    VDO70304.1    UZAI01004395    VDO86019.1    JARK01001398    EYC09120.1    NIRI01002339    RJW62253.1    NIRI01001987    RJW64224.1    GGMR01000126    MBY12745.1    GBRD01000202    JAG65619.1   

Proteomes

UP000271974    UP000050602    UP000225706    UP000050790    UP000277204    UP000050789    + More
UP000007110    UP000050761    UP000230750    UP000008672    UP000287563    UP000248079    UP000069272    UP000001038    UP000024635   

PRIDE

D7F173   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF14529   Exo_endo_phos_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR027124   Swc5/CFDP2       
IPR005135   Endo/exonuclease/phosphatase       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F173   A0A3S0ZUP8   A0A3S1HYS8   A0A433TL31   A0A3S0Z3I7   A0A0K8S889   + More
A0A0R3QDD8   A0A034VWX2   A0A2B4R8E3   A0A2B4RLZ4   A0A2B4SQ50   Q4QQE8   A0A2B4SLP8   A0A183MMK9   A0A183LTI8   C7C207   A0A183KK49   W4XQE1   A0A183N6M3   A0A3S1BSU6   A0A183K757   A0A3S1BKK2   A0A183M158   A0A2B4S265   A0A183FUE5   A0A3P7YP47   A0A183LH64   A0A3P7ZWP0   A0A3S1H9Q0   A0A183K366   A0A183L6R6   A0A183MM50   A0A183MWW8   A0A0A9X4P7   A0A183MBC4   A0A3P8ANK8   A0A183L0L7   A0A183N861   A0A430Q2J0   A0A183MV72   A0A183LB65   A0A2G8LQ85   A0A183LM32   A0A183LZL5   H3B4N3   A0A2G8JGP4   A0A183JXE5   A0A183M8Y6   A0A183N0Z2   A0A3P8DCC0   A0A2B4R8F8   A0A3P8BZD5   A0A183MTP0   A0A3S3QXP3   A0A183L9Q3   A0A433TEI1   A0A183K067   A0A183LQV9   A0A183KVH6   A0A3P8A497   A0A183M3P4   A0A2V3ZRE9   A0A183LL57   A0A3P8AM30   A0A183K4C7   A0A182FVE7   A0A3B3HVR8   A0A183JWU1   A0A183LMQ3   A0A183M420   A0A183LFM6   A0A183LR54   A0A3P7Z778   A0A016U1Y9   A0A183LZY7   A0A419PJT1   A0A3R7JMY9   A0A2S2N6G4   A0A0K8TJE5  

PDB

5HHL     E-value=5.86391e-05,     Score=112

KEGG

105842195    no KO assigned | (RefSeq) uncharacterized LOC105842195

GO

GO:0004519   GO:0003964  

PANTHER

PTHR23227  

Length:

474

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0477000000000001

Exp number, first 60 AAs:

0.01747

Total prob of N-in:

0.00491

outside

1  -  474

 

 

Pi

233.711777

Theta

142.143461

Tajima's D

2.020193

CLR

55.028248

CSRT

0.886655667216639

Interpretation

Uncertain