Gene

KWMTBOMO08328

Pre Gene Modal

BGIBMGA009265

Annotation

PREDICTED:_nuclear_transcription_factor_Y_subunit_alpha_[Amyelois_transitella]

Location

Bomo_Chr14(+):5642555-5648665      View in EpiBrowser

Transcription factor

NF-YA

Location in the cell

Nuclear   Reliability : 4.668

CDS

ATGGAGCATGCACAAATCCAGAATGCAGATGGGCCCCAAGTGATGACCATCAATGGACAACAGTTGCAAGTATTGCAGATGAACACCTCTCCGCACATGGTTCAAGGTCCTAATGGTCAACAGATCATGGTTCATACAATAGCAACTCCTACACAGACTATTCAGGTAGCAGCTCCGAATGGGCAGCAGATCCAACAACTTCAAGTCTTACCGATTTCAAATTTGCAAGGTGGAGGGAACAATGTACAGCCAATGCAGTTAGTTCAGACACCTGACGGCCAGACATTTCTGTACCAACCGACTGCACAGGCTCAACCATCCATTGACCAACACCAAATAATTCATCAACCTGCCGTTATCAACTTGAATGGGAATCTTGTGCAAGTTGCTGGAGTGAGTAACGCCGTGCAGCCACAGCAGATCGTCAATCAACCTAATATTGTCATGATGGTGAATGGCACTAATAACACAAGCACAACAGCAACTCCAACAGAAGGTCCGGGATCATCAGCCGCTGGCTCTGATGAAGAGCCTCTGTTGTATGTAAATGCTAGACAGTTCAAGCAAATATTAAAACGTAGAGCTGCAAGAGCGAGGCTTCATGAACTAGGAAAAATACCTAAAGAACGGCCGAAATACCTGCACGAATCGCGACACAGGCACGCGATGAACAGAATCAGAGGTGAAGGTGGAAGGTTTCACTCGGGGAGTAGGAAAAATATGGACAATTCAGACCAGTCACATCTTTCAGAAGATCAGAAAGATGATATTAAACCGGACACTGTCTCCATCACAATCATACAGGAAGATGAAACTCCAGAACAACAGCAGACGCAGTGGAGACGGCTGGCGCCGCACCAGCCGCTACAGTCCACATAG

Protein

MEHAQIQNADGPQVMTINGQQLQVLQMNTSPHMVQGPNGQQIMVHTIATPTQTIQVAAPNGQQIQQLQVLPISNLQGGGNNVQPMQLVQTPDGQTFLYQPTAQAQPSIDQHQIIHQPAVINLNGNLVQVAGVSNAVQPQQIVNQPNIVMMVNGTNNTSTTATPTEGPGSSAAGSDEEPLLYVNARQFKQILKRRAARARLHELGKIPKERPKYLHESRHRHAMNRIRGEGGRFHSGSRKNMDNSDQSHLSEDQKDDIKPDTVSITIIQEDETPEQQQTQWRRLAPHQPLQST

Uniprot

H9JIB5   A0A3S2L9Q0   A0A2W1BUC1   A0A194PZP9   A0A2H1UZM1   A0A1E1WK50   + More
S4P253   A0A212FDX3   A0A2A4IYZ3   A0A194R7J7   A0A1W4WP73   A0A1W4WP55   A0A1Y1MZN7   A0A1Y1MWE3   A0A1Y1MUU2   A0A1Y1MV75   A0A1Y1MUT0   A0A026WS19   A0A1B6DGI9   E0V9G5   D1ZZH5   A0A3L8DXG6   A0A2R7VPE6   A0A1B6LAP2   E9ISS0   A0A2J7PYW9   A0A2J7PYZ3   A0A088AGX0   A0A151IH48   A0A2J7PYZ1   A0A158NPE3   A0A0L7QK28   A0A195F4F0   A0A0A9ZII9   A0A224XTW4   A0A195E5B4   F4WH76   A0A2A3ESC0   A0A195B9D0   A0A023F394   E2ADU8   A0A154P6Q6   A0A0V0GCB0   A0A151X644   A0A0N0BFU8   A0A226E6R1   A0A1B6JM49   A0A0C9PJQ9   A0A1L8DHN4   A0A444TE91   A0A443QII4   A0A2D0PLM0   A0A131XG30   A0A131YQM8   A0A443SJD6   A0A2D0PJ21   A0A2D0PJ18   A0A224YUZ2   A0A2H8THC0   G1KSQ3   A0A1Q3F594   A0A1Q3F4F3   A0A0P4WE93   A0A3S2M950   A0A3P9H587   A0A3Q2XFX0   A0A2D0PLM6   A0A402EK00   B0R049   A0A3Q1FZ19   J9LW24   A0A315W4Z2   A0A1E1XDW9   A0A3Q3LQW8   A0A3B4WP72   A0A1A8HIU3   A0A1A8P5W2   A0A1A7ZBK8   A0A3Q3G304   A0A151P519   A0A1A7XWH7   V8P2H7   A0A2G8K6E2  

Pubmed

19121390    28756777    26354079    23622113    22118469    28004739    + More
24508170    20566863    18362917    19820115    30249741    21282665    21347285    25401762    26823975    21719571    25474469    20798317    28049606    26830274    28797301    17554307    29703783    28503490    22293439    24297900    29023486   

EMBL

BABH01022259    RSAL01000371    RVE42139.1    KZ149916    PZC77951.1    KQ459585    + More
KPI98219.1    ODYU01000005    SOQ34053.1    GDQN01005240    GDQN01003813    JAT85814.1    JAT87241.1    GAIX01012190    JAA80370.1    AGBW02008992    OWR51956.1    NWSH01005041    PCG64484.1    KQ460627    KPJ13489.1    GEZM01020031    GEZM01020030    JAV89446.1    GEZM01020029    GEZM01020028    JAV89448.1    GEZM01020034    GEZM01020032    JAV89442.1    GEZM01020027    JAV89449.1    GEZM01020033    JAV89443.1    KK107139    EZA57894.1    GEDC01019968    GEDC01019104    GEDC01012536    JAS17330.1    JAS18194.1    JAS24762.1    DS234993    EEB10021.1    KQ971338    EFA01850.1    QOIP01000003    RLU25164.1    KK854015    PTY09404.1    GEBQ01030102    GEBQ01019286    JAT09875.1    JAT20691.1    GL765434    EFZ16360.1    NEVH01020341    PNF21533.1    PNF21532.1    KQ977643    KYN00867.1    PNF21530.1    ADTU01022405    KQ415028    KOC58915.1    KQ981836    KYN35052.1    GBHO01000801    GBHO01000799    GBRD01014024    GDHC01011515    JAG42803.1    JAG42805.1    JAG51802.1    JAQ07114.1    GFTR01004883    JAW11543.1    KQ979608    KYN20276.1    GL888153    EGI66442.1    KZ288189    PBC34655.1    KQ976542    KYM81141.1    GBBI01003051    JAC15661.1    GL438820    EFN68460.1    KQ434827    KZC07557.1    GECL01000504    JAP05620.1    KQ982482    KYQ55851.1    KQ435794    KOX73868.1    LNIX01000006    OXA53295.1    GECU01016426    GECU01007743    JAS91280.1    JAS99963.1    GBYB01001193    JAG70960.1    GFDF01008163    JAV05921.1    SAUD01003300    RXG68324.1    NCKU01007194    RWS02819.1    GEFH01002478    JAP66103.1    GEDV01007715    JAP80842.1    NCKV01001865    RWS27639.1    GFPF01010281    MAA21427.1    GFXV01001711    MBW13516.1    GFDL01012310    JAV22735.1    GFDL01012605    JAV22440.1    GDRN01043654    JAI66973.1    CM012443    RVE70418.1    BDOT01000016    GCF44491.1    AL773601    CAQ14846.1    ABLF02038121    NHOQ01000318    PWA30927.1    GFAC01001726    JAT97462.1    HAEC01015934    SBQ84155.1    HAEG01006434    SBR76710.1    HADY01001216    SBP39701.1    AKHW03000979    KYO44019.1    HADW01008483    HADW01012833    HADX01000151    SBP22383.1    AZIM01001009    ETE68480.1    MRZV01000840    PIK43586.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000007151    UP000218220    UP000053240    + More
UP000192223    UP000053097    UP000009046    UP000007266    UP000279307    UP000235965    UP000005203    UP000078542    UP000005205    UP000053825    UP000078541    UP000078492    UP000007755    UP000242457    UP000078540    UP000000311    UP000076502    UP000075809    UP000053105    UP000198287    UP000288706    UP000285301    UP000221080    UP000288716    UP000001646    UP000265200    UP000264820    UP000288954    UP000257200    UP000007819    UP000261640    UP000261360    UP000261660    UP000050525    UP000230750   

PRIDE

H9JIB5   

Pfam

PF02045   CBFB_NFYA        + More
PF15454   LAMTOR

Interpro

IPR001289   NFYA        + More
IPR018362   CCAAT-binding_factor_CS       
IPR028209   LAMTOR1/MEH1       

ProteinModelPortal

H9JIB5   A0A3S2L9Q0   A0A2W1BUC1   A0A194PZP9   A0A2H1UZM1   A0A1E1WK50   + More
S4P253   A0A212FDX3   A0A2A4IYZ3   A0A194R7J7   A0A1W4WP73   A0A1W4WP55   A0A1Y1MZN7   A0A1Y1MWE3   A0A1Y1MUU2   A0A1Y1MV75   A0A1Y1MUT0   A0A026WS19   A0A1B6DGI9   E0V9G5   D1ZZH5   A0A3L8DXG6   A0A2R7VPE6   A0A1B6LAP2   E9ISS0   A0A2J7PYW9   A0A2J7PYZ3   A0A088AGX0   A0A151IH48   A0A2J7PYZ1   A0A158NPE3   A0A0L7QK28   A0A195F4F0   A0A0A9ZII9   A0A224XTW4   A0A195E5B4   F4WH76   A0A2A3ESC0   A0A195B9D0   A0A023F394   E2ADU8   A0A154P6Q6   A0A0V0GCB0   A0A151X644   A0A0N0BFU8   A0A226E6R1   A0A1B6JM49   A0A0C9PJQ9   A0A1L8DHN4   A0A444TE91   A0A443QII4   A0A2D0PLM0   A0A131XG30   A0A131YQM8   A0A443SJD6   A0A2D0PJ21   A0A2D0PJ18   A0A224YUZ2   A0A2H8THC0   G1KSQ3   A0A1Q3F594   A0A1Q3F4F3   A0A0P4WE93   A0A3S2M950   A0A3P9H587   A0A3Q2XFX0   A0A2D0PLM6   A0A402EK00   B0R049   A0A3Q1FZ19   J9LW24   A0A315W4Z2   A0A1E1XDW9   A0A3Q3LQW8   A0A3B4WP72   A0A1A8HIU3   A0A1A8P5W2   A0A1A7ZBK8   A0A3Q3G304   A0A151P519   A0A1A7XWH7   V8P2H7   A0A2G8K6E2  

PDB

4AWL     E-value=2.66296e-16,     Score=207

KEGG

101738965    K08064 nuclear transcription factor Y, alpha | (RefSeq) nuclear transcription factor Y subunit alpha

GO

GO:0003700   GO:0016602   GO:0003677   GO:0016197   GO:0032008   GO:0007040   GO:0071230   GO:0071986   GO:0001919   GO:0042632   GO:0043410   GO:0032993   GO:0000980   GO:0005654   GO:0006355   GO:0016787   GO:0006508   GO:0005198   GO:0005576   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR12632  

Length:

292

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00226

Exp number, first 60 AAs:

0.00055

Total prob of N-in:

0.06689

outside

1  -  292

 

 

Pi

168.564194

Theta

161.124605

Tajima's D

0.158545

CLR

0.90205

CSRT

0.410829458527074

Interpretation

Uncertain