Gene

KWMTBOMO08322

Pre Gene Modal

BGIBMGA009262

Annotation

DCMP_deaminase_[Bombyx_mori]

Location

Bomo_Chr14(+):5514775-5516528      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.542

CDS

ATGGATTTAACTGAAAACATTGCCAACATATCTTTACACGAGGAACAAACAGCGAAGAAACGAAACGATTATATAGATTGGCAAGAATATTTTATGGCTGTTGCTTTTTTGGCGGCAAAACGCAGCAAAGATCCCAAAACGCAAGTCGGCGCATGCATAGTTAATAATGATAATAAAATAGTCGGCATAGGTTATAATGGAATGCCAATAGGTTGTAATGATGACGACTTTCCCTGGGGAAAGAACACTCCATCACCACTAGATAGCAAATACCTTTATGTATGTCATGCAGAAATGAATGCAATATTGAATAAAAACTCTGCAGATGTCAAAGACTGCACAATCTATGTAGGATTGTTTCCATGTAACGAATGTGCAAAAATGATCATACAGTCTGGTATTAAAAAGGTGGTATATTTATCAGACAAAAATGCACATAGGCCTGAGTACATTGCATCAAAGAAGATGTTTAATGCTTCCAATATAATATATAAACAATACAAACCAAGGAGAAGTAAAATTGAAATAAATTTCGACATTGACTGGGATTTGGTTAGCCCAACAAAATAG

Protein

MDLTENIANISLHEEQTAKKRNDYIDWQEYFMAVAFLAAKRSKDPKTQVGACIVNNDNKIVGIGYNGMPIGCNDDDFPWGKNTPSPLDSKYLYVCHAEMNAILNKNSADVKDCTIYVGLFPCNECAKMIIQSGIKKVVYLSDKNAHRPEYIASKKMFNASNIIYKQYKPRRSKIEINFDIDWDLVSPTK

Cofactor

Zn(2+)

Uniprot

Q1HQC5   H9JIB2   A0A194PY05   A0A212F965   A0A194RC47   A0A2M4AY80   + More
A0A2M4AZD3   B0WCS8   A0A151XIN5   F4WJY4   W5JJ10   A0A195E6U0   Q16GS2   A0A182H1S9   A0A182YMA6   A0A1Q3EV96   A0A158N9D7   A0A182SAI9   E2BPZ6   A0A182RCR6   A0A182NUH4   A0A182LVA7   A0A182JIW1   A0A195F8D6   A0A182W6Z5   A0A3S2NPM3   A0A1B6JJG3   A0A182Q2M4   A0A182PPM1   J9JN69   A0A182JRD8   S4P473   A0A182WTZ0   A0A1S4GXF6   A0A182HUK6   A0A182F4Y1   A0A182U8Z5   A0A182USN6   A0A1B6KAN0   A0A182L1C0   A0A232EEY8   A0A1B6GX39   A0A2S2QJ81   K7J4I0   A0A1B6C897   A0A2J7PPW2   A0A0P6DMZ9   A0A164HJJ1   A0A336LMI9   A0A0P5Z1Q3   A0A0N7ZS49   A0A336MVR8   A0A0P5ABW5   A0A0N8D8E1   A0A0P5WXL4   A0A084W840   A0A026WGN9   A0A0P5ELF0   E9FTX6   A0A3N0XK51   R7V9L4   A0A0P5U6S3   Q7Q423   A0A0P5Z6Z6   A0A0P5XWN8   A0A0D2VZ05   J3JYP0   E2ANZ7   H9GK09   A0A0N8D273   A0A3B1IS42   A0A195BI13   A0A0P4WGY5   A0A3Q2YI33   A0A2M4AYS5   A0A3Q3FLJ9   A0A3Q3KUX3   A0A067R8C6   Q568L4   A0A3Q3EUD4   A0A3Q2YVQ7   A0A3P9JC14   A0A3Q0R8L5   A0A3Q1BE87   H2L9U8   A0A3P9KWD1   A0A3P9AT11   A0A3Q2V4B5   V4AJZ0   W5UF04   A0A1W4Z033   H3B5V9   A0A3B1K873   A0A3P9KWS6   A0A3Q0R8M2   A0A060X7L2   A0A3B4GLD7   A0A3P8Q976   A0A3P9AT03   A0A3P9QF85  

Pubmed

19121390    26354079    22118469    21719571    20920257    23761445    + More
17510324    26483478    25244985    21347285    20798317    23622113    12364791    20966253    28648823    20075255    24438588    24508170    30249741    21292972    23254933    22516182    23537049    21881562    25329095    24845553    23594743    17554307    25186727    23127152    9215903    24755649   

EMBL

DQ443127    ABF51216.1    BABH01022251    KQ459585    KPI98212.1    AGBW02009643    + More
OWR50263.1    KQ460627    KPJ13481.1    GGFK01012384    MBW45705.1    GGFK01012835    MBW46156.1    DS231890    EDS43804.1    KQ982093    KYQ60070.1    GL888187    EGI65506.1    ADMH02001270    ETN63278.1    KQ979592    KYN20587.1    CH478240    EAT33442.1    JXUM01103894    KQ564842    KXJ71660.1    GFDL01015818    JAV19227.1    ADTU01009484    GL449694    EFN82184.1    AXCM01003521    KQ981727    KYN36698.1    RSAL01000016    RVE53058.1    GECU01008372    JAS99334.1    AXCN02000760    ABLF02024120    GAIX01006119    JAA86441.1    AAAB01008964    APCN01002465    GEBQ01031475    JAT08502.1    NNAY01005194    OXU16903.1    GECZ01002775    JAS66994.1    GGMS01008593    MBY77796.1    AAZX01012204    GEDC01027617    GEDC01007402    JAS09681.1    JAS29896.1    NEVH01022644    PNF18359.1    GDIQ01078865    JAN15872.1    LRGB01010791    KZS00308.1    UFQS01000056    UFQT01000056    SSW98744.1    SSX19130.1    GDIP01051320    JAM52395.1    GDIP01217945    JAJ05457.1    UFQT01001992    SSX32337.1    GDIP01204590    JAJ18812.1    GDIP01058719    JAM44996.1    GDIP01080105    JAM23610.1    ATLV01021356    ATLV01021357    KE525317    KFB46384.1    KK107214    QOIP01000005    EZA55227.1    RLU22719.1    GDIP01158058    JAJ65344.1    GL732524    EFX89442.1    RJVU01071404    ROI47923.1    AMQN01004524    AMQN01004525    KB293746    ELU15543.1    GDIP01134262    JAL69452.1    EAA12688.2    GDIP01048067    JAM55648.1    GDIP01066370    JAM37345.1    KE346373    KJE97002.1    BT128370    KB631806    AEE63328.1    ERL86292.1    GL441439    EFN64829.1    AAWZ02029437    AAWZ02029438    GDIP01076063    JAM27652.1    KQ976476    KYM83847.1    GDRN01053061    JAI66201.1    GGFK01012427    MBW45748.1    KK852672    KDR18771.1    CU929244    BC092809    AAH92809.1    KB201890    ESO93851.1    JT408079    AHH38227.1    AFYH01019722    AFYH01019723    AFYH01019724    AFYH01019725    AFYH01019726    AFYH01019727    AFYH01019728    AFYH01019729    AFYH01019730    AFYH01019731    FR904859    CDQ72825.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000053240    UP000002320    UP000075809    + More
UP000007755    UP000000673    UP000078492    UP000008820    UP000069940    UP000249989    UP000076408    UP000005205    UP000075901    UP000008237    UP000075900    UP000075884    UP000075883    UP000075880    UP000078541    UP000075920    UP000283053    UP000075886    UP000075885    UP000007819    UP000075881    UP000076407    UP000075840    UP000069272    UP000075902    UP000075903    UP000075882    UP000215335    UP000002358    UP000235965    UP000076858    UP000030765    UP000053097    UP000279307    UP000000305    UP000014760    UP000007062    UP000008743    UP000030742    UP000000311    UP000001646    UP000018467    UP000078540    UP000264820    UP000261660    UP000261640    UP000027135    UP000000437    UP000265200    UP000261340    UP000257160    UP000001038    UP000265180    UP000265160    UP000264840    UP000030746    UP000221080    UP000192224    UP000008672    UP000193380    UP000261460    UP000265100    UP000242638   

PRIDE

Q1HQC5    H9JIB2   

Pfam

PF00383   dCMP_cyt_deam_1        + More
PF13012   MitMem_reg
PF01398   JAB

Interpro

IPR016192   APOBEC/CMP_deaminase_Zn-bd        + More
IPR035105   Deoxycytidylate_deaminase_dom       
IPR016473   dCMP_deaminase       
IPR016193   Cytidine_deaminase-like       
IPR002125   CMP_dCMP_dom       
IPR015517   dCMP_deaminase-rel       
IPR033859   MPN_CSN6       
IPR037518   MPN       
IPR000555   JAMM/MPN+_dom       
IPR024969   Rpn11/EIF3F_C       

SUPFAM

SSF53927   SSF53927       

CDD

cd01286  deoxycytidylate_deaminase
cd08063  MPN_CSN6

ProteinModelPortal

Q1HQC5   H9JIB2   A0A194PY05   A0A212F965   A0A194RC47   A0A2M4AY80   + More
A0A2M4AZD3   B0WCS8   A0A151XIN5   F4WJY4   W5JJ10   A0A195E6U0   Q16GS2   A0A182H1S9   A0A182YMA6   A0A1Q3EV96   A0A158N9D7   A0A182SAI9   E2BPZ6   A0A182RCR6   A0A182NUH4   A0A182LVA7   A0A182JIW1   A0A195F8D6   A0A182W6Z5   A0A3S2NPM3   A0A1B6JJG3   A0A182Q2M4   A0A182PPM1   J9JN69   A0A182JRD8   S4P473   A0A182WTZ0   A0A1S4GXF6   A0A182HUK6   A0A182F4Y1   A0A182U8Z5   A0A182USN6   A0A1B6KAN0   A0A182L1C0   A0A232EEY8   A0A1B6GX39   A0A2S2QJ81   K7J4I0   A0A1B6C897   A0A2J7PPW2   A0A0P6DMZ9   A0A164HJJ1   A0A336LMI9   A0A0P5Z1Q3   A0A0N7ZS49   A0A336MVR8   A0A0P5ABW5   A0A0N8D8E1   A0A0P5WXL4   A0A084W840   A0A026WGN9   A0A0P5ELF0   E9FTX6   A0A3N0XK51   R7V9L4   A0A0P5U6S3   Q7Q423   A0A0P5Z6Z6   A0A0P5XWN8   A0A0D2VZ05   J3JYP0   E2ANZ7   H9GK09   A0A0N8D273   A0A3B1IS42   A0A195BI13   A0A0P4WGY5   A0A3Q2YI33   A0A2M4AYS5   A0A3Q3FLJ9   A0A3Q3KUX3   A0A067R8C6   Q568L4   A0A3Q3EUD4   A0A3Q2YVQ7   A0A3P9JC14   A0A3Q0R8L5   A0A3Q1BE87   H2L9U8   A0A3P9KWD1   A0A3P9AT11   A0A3Q2V4B5   V4AJZ0   W5UF04   A0A1W4Z033   H3B5V9   A0A3B1K873   A0A3P9KWS6   A0A3Q0R8M2   A0A060X7L2   A0A3B4GLD7   A0A3P8Q976   A0A3P9AT03   A0A3P9QF85  

PDB

2W4L     E-value=2.3544e-57,     Score=558

KEGG

733096    K01493 dCMP deaminase [EC:3.5.4.12] | (RefSeq) DCMP deaminase

PATHWAY

00240    Pyrimidine metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0004132   GO:0008270   GO:0006220   GO:0016787   GO:0008180   GO:0000338   GO:0006226   GO:0005737   GO:0006231   GO:0042802   GO:0046872   GO:0003824   GO:0006508   GO:0005198   GO:0005576   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR11086  

Length:

189

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0059

Exp number, first 60 AAs:

0.00212

Total prob of N-in:

0.11534

outside

1  -  189

 

 

Pi

216.551755

Theta

152.90936

Tajima's D

1.08289

CLR

0

CSRT

0.691265436728164

Interpretation

Uncertain