SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08317
Annotation
reverse_transcriptase_[Bombyx_mori]
Full name
Probable RNA-directed DNA polymerase from transposon BS      
Alternative Name
Reverse transcriptase
Location in the cell
Mitochondrial   Reliability : 1.419 Nuclear   Reliability : 1.726
 

Sequence

CDS
ATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATTCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTTGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGATTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCGCACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTTGTGTTCTCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATAAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATCGCGAAACAATTGCTCTTGAGTTGTTAG
Protein
MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHSTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKIQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSARISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFSHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYIKSASERYFDKAIAKQLLLSC

Summary

Catalytic Activity
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)
Cofactor
Mg(2+)
Mn(2+)
Keywords
Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  
Feature
chain  Probable RNA-directed DNA polymerase from transposon BS
EC Number
2.7.7.49
EMBL
U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005359    JAB63107.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02042518    ABLF02057746    GGMS01006359    MBY75562.1    GGMS01002955    MBY72158.1    RPOV01000134    RPJ78669.1    ABLF02003961    ABLF02059872    GFTR01008038    JAW08388.1    GFXV01007093    MBW18898.1    GBBI01004395    JAC14317.1    ABLF02008463    S59870    AAB26437.2    GGMR01018716    MBY31335.1    NEVH01006736    PNF36716.1    GBBI01004571    JAC14141.1    ABLF02008153    ABLF02008462    ABLF02008464    GGMS01000737    MBY69940.1    ABLF02033757    GGMS01008766    MBY77969.1    GGMR01003407    MBY16026.1    GGMS01017914    MBY87117.1    GEZM01053022    JAV74219.1    GBYB01008290    JAG78057.1    GBBI01001646    JAC17066.1    GGMR01000676    MBY13295.1    GFTR01008262    JAW08164.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGFJ01001858    MBW50999.1    GGFJ01001857    MBW50998.1    GEZM01084969    JAV60363.1    NEVH01006721    PNF37225.1    ABLF02024246    GFDF01007661    JAV06423.1    GEZM01038405    JAV81653.1    NEVH01000269    PNF43694.1    NEVH01026386    PNF14434.1    NEVH01022639    PNF18527.1    GGMS01002992    MBY72195.1    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01020940    PNF20481.1    GGMS01017365    MBY86568.1    ABLF02034467    NEVH01017542    PNF24034.1    ABLF02037660    GBGD01000880    JAC88009.1    GEZM01074951    JAV64378.1    ABLF02041767    NWSH01000032    PCG80497.1    GBGD01000799    JAC88090.1    GGMR01014053    MBY26672.1    GFTR01008279    JAW08147.1    ABLF02028535    ABLF02028545    PCG80496.1    LBMM01013518    KMQ85605.1    ABLF02020655    ABLF02039168    ABLF02061060    GFTR01008256    JAW08170.1    NEVH01020071    PNF21969.1    GFTR01008271    JAW08155.1    AY060438    AAL25477.1    GFTR01008151    JAW08275.1    GBBI01001570    JAC17142.1    GFTR01008251    JAW08175.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01010546    PNF32261.1    ABLF02040174    ABLF02040183    ABLF02055266    NEVH01023962    PNF17612.1    NEVH01003017    PNF40781.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    GFTR01008246    JAW08180.1    KQ973412    EFA12510.2    NEVH01005938    PNF38077.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01001355    PNF42855.1    LBMM01014395    KMQ85192.1    NEVH01016302    PNF25823.1    NEVH01014858    PNF27387.1   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
672
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.80025000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04080
outside
1  -  672
 
 

Population Genetic Test Statistics

Pi
30.816984
Theta
31.071087
Tajima's D
0
CLR
1.870159
CSRT
0.366281685915704
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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