Gene

KWMTBOMO08317

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr14(+):5289655-5291910      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.419 Nuclear   Reliability : 1.726

CDS

ATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATTCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTTGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGATTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCGCACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTTGTGTTCTCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATAAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATCGCGAAACAATTGCTCTTGAGTTGTTAG

Protein

MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHSTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKIQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSARISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFSHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYIKSASERYFDKAIAKQLLLSC

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
V5GNJ2   A0A139WA11   A0A139W8G9   V5GNF3   A0A2S2PR14   J9KKL3   X1WLB2   A0A2S2QEE0   A0A2S2Q352   A0A3N5Z7I3   X1WWC4   A0A224XF24   A0A2H8U0H5   A0A023EYS8   J9KCZ4   Q07995   A0A2S2PPK8   A0A2J7R7D0   A0A023EZE6   X1WNI2   A0A2S2PX53   J9KC83   A0A2S2QJM7   A0A2S2NGV8   A0A2S2RAN7   A0A1Y1LKN6   A0A0C9RJA4   A0A023F6S4   K7IN67   A0A2S2N814   A0A224XB44   J9LC21   A0A2M4BD67   A0A2M4BDV6   A0A1Y1KFR3   A0A2J7R8R8   J9M522   A0A1L8DIZ6   A0A1Y1M7E9   A0A2J7RS81   A0A2J7PDM0   A0A2J7PQB5   A0A2S2Q383   X1WN18   A0A2J7PVX3   A0A2S2R9D4   X1WZH0   A0A2J7Q627   X1WTA1   A0A069DZC5   A0A1Y1KUU7   J9KPF1   A0A2A4K8E7   A0A069DW01   A0A2S2PBB4   A0A224X6Q4   J9JS95   A0A2A4K918   A0A0J7MYU2   J9LC15   A0A224XI99   A0A2J7Q059   A0A224X6S1   Q95SX7   A0A224X746   A0A023F7D1   A0A224X6U5   A0A0A9YJ00   A0A2J7QUJ9   J9KLB1   A0A2J7PMP6   A0A2J7RIW7   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A224XIB0   D7EM17   A0A2J7RB54   A0A0A9YU04   A0A2J7RPU2   A0A0J7K4E0   A0A2J7QB68   A0A2J7QFL0  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
30086797    25474469    8387152    20075255    26334808    7753626    12537569    25401762   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GALX01005359    JAB63107.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02042518    ABLF02057746    GGMS01006359    MBY75562.1    GGMS01002955    MBY72158.1    RPOV01000134    RPJ78669.1    ABLF02003961    ABLF02059872    GFTR01008038    JAW08388.1    GFXV01007093    MBW18898.1    GBBI01004395    JAC14317.1    ABLF02008463    S59870    AAB26437.2    GGMR01018716    MBY31335.1    NEVH01006736    PNF36716.1    GBBI01004571    JAC14141.1    ABLF02008153    ABLF02008462    ABLF02008464    GGMS01000737    MBY69940.1    ABLF02033757    GGMS01008766    MBY77969.1    GGMR01003407    MBY16026.1    GGMS01017914    MBY87117.1    GEZM01053022    JAV74219.1    GBYB01008290    JAG78057.1    GBBI01001646    JAC17066.1    GGMR01000676    MBY13295.1    GFTR01008262    JAW08164.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGFJ01001858    MBW50999.1    GGFJ01001857    MBW50998.1    GEZM01084969    JAV60363.1    NEVH01006721    PNF37225.1    ABLF02024246    GFDF01007661    JAV06423.1    GEZM01038405    JAV81653.1    NEVH01000269    PNF43694.1    NEVH01026386    PNF14434.1    NEVH01022639    PNF18527.1    GGMS01002992    MBY72195.1    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01020940    PNF20481.1    GGMS01017365    MBY86568.1    ABLF02034467    NEVH01017542    PNF24034.1    ABLF02037660    GBGD01000880    JAC88009.1    GEZM01074951    JAV64378.1    ABLF02041767    NWSH01000032    PCG80497.1    GBGD01000799    JAC88090.1    GGMR01014053    MBY26672.1    GFTR01008279    JAW08147.1    ABLF02028535    ABLF02028545    PCG80496.1    LBMM01013518    KMQ85605.1    ABLF02020655    ABLF02039168    ABLF02061060    GFTR01008256    JAW08170.1    NEVH01020071    PNF21969.1    GFTR01008271    JAW08155.1    AY060438    AAL25477.1    GFTR01008151    JAW08275.1    GBBI01001570    JAC17142.1    GFTR01008251    JAW08175.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01010546    PNF32261.1    ABLF02040174    ABLF02040183    ABLF02055266    NEVH01023962    PNF17612.1    NEVH01003017    PNF40781.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    GFTR01008246    JAW08180.1    KQ973412    EFA12510.2    NEVH01005938    PNF38077.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01001355    PNF42855.1    LBMM01014395    KMQ85192.1    NEVH01016302    PNF25823.1    NEVH01014858    PNF27387.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000002358    UP000218220    + More
UP000036403   

PRIDE

Q93137    Q9BPQ0    Q9XXW0    Q95SX7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
V5GNJ2   A0A139WA11   A0A139W8G9   V5GNF3   A0A2S2PR14   J9KKL3   X1WLB2   A0A2S2QEE0   A0A2S2Q352   A0A3N5Z7I3   X1WWC4   A0A224XF24   A0A2H8U0H5   A0A023EYS8   J9KCZ4   Q07995   A0A2S2PPK8   A0A2J7R7D0   A0A023EZE6   X1WNI2   A0A2S2PX53   J9KC83   A0A2S2QJM7   A0A2S2NGV8   A0A2S2RAN7   A0A1Y1LKN6   A0A0C9RJA4   A0A023F6S4   K7IN67   A0A2S2N814   A0A224XB44   J9LC21   A0A2M4BD67   A0A2M4BDV6   A0A1Y1KFR3   A0A2J7R8R8   J9M522   A0A1L8DIZ6   A0A1Y1M7E9   A0A2J7RS81   A0A2J7PDM0   A0A2J7PQB5   A0A2S2Q383   X1WN18   A0A2J7PVX3   A0A2S2R9D4   X1WZH0   A0A2J7Q627   X1WTA1   A0A069DZC5   A0A1Y1KUU7   J9KPF1   A0A2A4K8E7   A0A069DW01   A0A2S2PBB4   A0A224X6Q4   J9JS95   A0A2A4K918   A0A0J7MYU2   J9LC15   A0A224XI99   A0A2J7Q059   A0A224X6S1   Q95SX7   A0A224X746   A0A023F7D1   A0A224X6U5   A0A0A9YJ00   A0A2J7QUJ9   J9KLB1   A0A2J7PMP6   A0A2J7RIW7   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A224XIB0   D7EM17   A0A2J7RB54   A0A0A9YU04   A0A2J7RPU2   A0A0J7K4E0   A0A2J7QB68   A0A2J7QFL0  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0006313  

Length:

672

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.80025000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04080

outside

1  -  672

 

 

Pi

30.816984

Theta

31.071087

Tajima's D

0

CLR

1.870159

CSRT

0.366281685915704

Interpretation

Uncertain