Gene

KWMTBOMO08311

Pre Gene Modal

BGIBMGA009257

Annotation

PREDICTED:_RNA_polymerase_II-associated_factor_1_homolog_[Papilio_polytes]

Location

Bomo_Chr14(+):5058635-5066863      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.333

CDS

ATGCCACCCACAATACAAACAGGTGAAGCAGAAAGGGATAAACGGCCAACAAGGACCGGAGAGAGGAGGTCAGAGCTGCTAACTAAAGTGAAATATTGTAACACACTGCCTGACATACCGTTTGACTTGAAATTCATAACGTACCCATTTCCTTCGACGCGCTTTGTACAGTACAATCCGACCTCTTTAGAGAAAAGCTATCGCTATGAAGTTCTCACAGAACATGATCTGGGAGTGCACATAGATTTGATCAACCGAGATATATACCAAGGAGATGGTAATGCACCATTGGATCCTGCAGACGAGAAGTTGCTTGAAGATGATGTCCTCACGCCCCAAGATTCAAAGAGATCCCGTCATCATGCCAAAAATGTTTCATGGTTACGTCGTTCAGAATATATATCTACGGAAGCTACTAGATTTCAGCCTCAGTCCATGGAAAAGGTGGAAGCCAAAGTGGGTTATAATGTTAAAAAGATATTTAGTGAAGAAACACTATATATGGATAGAGAAAGTCAAATCAAAGCTATTGAAAAGACATTTGAAGACAACAAGAGACCTATAGAGAAGCATTACAGCAAACCTGGTGTGACCCCAGTGGAAGTAATGCCAATATTTCCTGATTTTGACATGTGGAAATATCCCTGTGCTCAGGTTATATTTGATTCAGATCCAGCACCCGCTGACAAGAATTTCTCAGGACAAATGGAGGCCATGTCACAAGCTATGATTAGAGGTGTGATGGATGAAAGTGGTGAACAGTTCGTGGCCTATTGTCTTCCCACCGAGGAAACAATACAGAAGCGACGTCGTGATGTTAATGAAAACATACCATACATGGACGAGGACACCTATGAGTATAAAATGGCTAGAGAATACAACTGGAATGTTAAAAGCAAAGCCTCTAAAGGCTATGAAGAGAATTACTTTTTGGTGGTGCGTAATCACTGTGTTTACTACAATGAATTGGAAACGAGAGTTCGTCTGTCGAAACGTCGAGCCCGCGCTGGAGCAGCTGCACAAGCCCCGACTAGGCTGGTGGTCACGCATCGTCCTCTCAGTAGCACCGAACATCGTATGCTGAGACTTAGAGAGAAGCAACTTGAGCCTCCACAAGATGAAGACGAGGAGGAGGAGGAAGAAGAAGATGAAGAAGAAAAGCAGGAACAGAGCGGCGAGAAGGAAAGGTCTCGTTCGCGATCAAAATCGGGTTCGAAGTCTCCTCGTGGCTCCGAGAAGTCCAAAGGCTCGGGAAGGTCCAGGTCGCCGTCACGCGAGAAGTCGAAGTCGCGTTCGAGGTCAAGGAGTCGTTCTCGGTCCGCTTCCGGCTCTAGGAACTCGAGATCTCGTTCAGGATCGGCACGTTCTCGGTCACCGAGATCTGGTTCAGAGCGTTCTCGGTCACGTTCAAAGTCTGGCTCGAGGGCGTCTTCAAGAGCCAGTTCCAAGAGCGGGGCGGGTTCTCGCGCCAGTTCCGCTTCGAGAGGATCCCGTGCTACTTCTAAAGCTAGTGATAAAGGTTCGAAAGCCAGCTCTCGGGCGTTCCAAAGCTTCATCCAGAGCTAG

Protein

MPPTIQTGEAERDKRPTRTGERRSELLTKVKYCNTLPDIPFDLKFITYPFPSTRFVQYNPTSLEKSYRYEVLTEHDLGVHIDLINRDIYQGDGNAPLDPADEKLLEDDVLTPQDSKRSRHHAKNVSWLRRSEYISTEATRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQIKAIEKTFEDNKRPIEKHYSKPGVTPVEVMPIFPDFDMWKYPCAQVIFDSDPAPADKNFSGQMEAMSQAMIRGVMDESGEQFVAYCLPTEETIQKRRRDVNENIPYMDEDTYEYKMAREYNWNVKSKASKGYEENYFLVVRNHCVYYNELETRVRLSKRRARAGAAAQAPTRLVVTHRPLSSTEHRMLRLREKQLEPPQDEDEEEEEEEDEEEKQEQSGEKERSRSRSKSGSKSPRGSEKSKGSGRSRSPSREKSKSRSRSRSRSRSASGSRNSRSRSGSARSRSPRSGSERSRSRSKSGSRASSRASSKSGAGSRASSASRGSRATSKASDKGSKASSRAFQSFIQS

Uniprot

A0A0M8ZXJ8   A0A151J5B0   E2BW34   A0A158NYE7   A0A0L7RGX7   F4WT63   + More
A0A0J7KQX7   A0A2A3EES3   A0A087ZYU4   A0A151ICH5   A0A0T6B5X2   A0A3L8DWY2   A0A026WBF4   E2ARV4   A0A154PRW0   A0A1W4X9Y1   A0A2D1QUH2   U4U7R8   A0A310SUF9   A0A0C9R326   A0A195AYW5   E0VJB7   A0A1B6ELA7   A0A1Q3F130   K7J0S0   A0A195F6J2   A0A1B6L7U8   A0A232FI20   Q17LJ8   K7IZZ9   A0A1S4EYG4   A0A182HB29   A0A1B6H8N7   A0A1S3DIW6   B0X0Z9   A0A2S2PXD0   J9JQ64   A0A146LCJ9   B3P243   B4PUH0   A0A2S2NC29   A0A2H8TKZ3   B4JSU5  

Pubmed

20798317    21347285    21719571    30249741    24508170    23537049    + More
20566863    20075255    28648823    17510324    26483478    26823975    17994087    17550304   

EMBL

KQ435809    KOX72967.1    KQ980055    KYN17988.1    GL451091    EFN80066.1    + More
ADTU01003773    KQ414596    KOC70088.1    GL888331    EGI62676.1    LBMM01004128    KMQ92787.1    KZ288269    PBC29974.1    KQ978052    KYM97790.1    LJIG01009596    KRT82764.1    QOIP01000003    RLU24298.1    KK107295    EZA52986.1    GL442175    EFN63837.1    KQ435037    KZC14084.1    KY285057    ATP16160.1    KB631766    ERL85990.1    KQ759870    OAD62449.1    GBYB01002340    GBYB01002341    JAG72107.1    JAG72108.1    KQ976701    KYM77232.1    DS235221    EEB13473.1    GECZ01031064    JAS38705.1    GFDL01013785    JAV21260.1    KQ981768    KYN36001.1    GEBQ01020217    JAT19760.1    NNAY01000195    OXU30099.1    CH477215    EAT47537.1    JXUM01124007    KQ566781    KXJ69833.1    GECU01036724    JAS70982.1    DS232249    EDS38391.1    GGMS01000973    MBY70176.1    ABLF02026501    GDHC01013753    JAQ04876.1    CH954181    EDV47816.1    CM000160    EDW95692.1    GGMR01002121    MBY14740.1    GFXV01002153    MBW13958.1    CH916373    EDV94835.1   

Proteomes

UP000053105    UP000078492    UP000008237    UP000005205    UP000053825    UP000007755    + More
UP000036403    UP000242457    UP000005203    UP000078542    UP000279307    UP000053097    UP000000311    UP000076502    UP000192223    UP000030742    UP000078540    UP000009046    UP000002358    UP000078541    UP000215335    UP000008820    UP000069940    UP000249989    UP000079169    UP000002320    UP000007819    UP000008711    UP000002282    UP000001070   

Pfam

PF07716   bZIP_2        + More
PF03985   Paf1

Interpro

IPR007133   RNA_pol_II-assoc_Paf1        + More
IPR004827   bZIP       
IPR027417   P-loop_NTPase       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

A0A0M8ZXJ8   A0A151J5B0   E2BW34   A0A158NYE7   A0A0L7RGX7   F4WT63   + More
A0A0J7KQX7   A0A2A3EES3   A0A087ZYU4   A0A151ICH5   A0A0T6B5X2   A0A3L8DWY2   A0A026WBF4   E2ARV4   A0A154PRW0   A0A1W4X9Y1   A0A2D1QUH2   U4U7R8   A0A310SUF9   A0A0C9R326   A0A195AYW5   E0VJB7   A0A1B6ELA7   A0A1Q3F130   K7J0S0   A0A195F6J2   A0A1B6L7U8   A0A232FI20   Q17LJ8   K7IZZ9   A0A1S4EYG4   A0A182HB29   A0A1B6H8N7   A0A1S3DIW6   B0X0Z9   A0A2S2PXD0   J9JQ64   A0A146LCJ9   B3P243   B4PUH0   A0A2S2NC29   A0A2H8TKZ3   B4JSU5  

PDB

6GMH     E-value=4.63542e-110,     Score=1018

KEGG

101737094    K15174 RNA polymerase II-associated factor 1 | (RefSeq) RNA polymerase II-associated factor 1 homolo

GO

GO:0006368   GO:0003700   GO:0016570   GO:0016593   GO:0035327   GO:0045893   GO:0005634   GO:0006355   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR23188  

Length:

521

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00100

outside

1  -  521

 

 

Pi

235.145569

Theta

190.615532

Tajima's D

0.429344

CLR

0.471901

CSRT

0.496475176241188

Interpretation

Uncertain