SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08310  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009249
Annotation
nucleosome_assembly_protein_isoform_1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.786
 

Sequence

CDS
ATGGGTACCGTCGAACGTTCTGGTGACGACCACACATCCGAAATGGAGTCTGCAGAAGAAGAAGAAGTCGTCGGAAGTGGTGAACTAGCGCAACACCTGTTGAAAAGTGGCGTGACCCGTAATGAAATGATAGCGGCCATCACAAATCGCCTTCATGCAGAAGCGATGGCATCCCTACCCCCGAATGTTCGTCGGCGAATCCGCGCCTTGAGAACTCTTCAGAAGGAGTTTGTCGACATTGAGGCCAAGTTTTACAGTGAAGTACATGCACTCGAATGCAAATATGAAAAACTTTACAAGCCTCTTTATGAAAAGCGAGCTCTTATTGTGAATGGCACATATGAACCTAATGATGATGAATGTCTCAACCCATGGCGTGATGACACTGAAGAAGAAGAGTTAGCTCGGGCGGTACAAAATGCTGCCATCACTGAGGGTGAGGAAAAGAAGGATGACAAGGCTATCGAGCCTCCAATGGATCCCAATGTAAAGGGTATCCCAGACTTTTGGTACAACATATTCAGGAATGTCTCAATGCTCAGCGAAATGATGCAAGAACATGATGAACCAATTCTAAAATGCTTGCAAGATATTAAAGTGCAAATGCATGAAGACCCCATAAGCTTCACTCTGGAATTCTACTTTGCTCCAAATGAATACTTCACAAATACAGTACTTACTAAAGAGTACTTAATGAAGTGCAAGCCCGATGAAGAGAGTCCATTAGAATTTGAAGGTCCTGAAATTTATTCTTGCAAGGGATGTGAAATAAACTGGAATGCTGGTAAAAACGTAACTGTCAAGACCATAAAGAAGAAACAGAAGCACAAGTCCCGTGGGTCAGTTCGCACTGTCACTAAGTCCGTCCAAGCTGACTCCTTCTTCAATTTCTTTAACCCACCAACTCTGCCGGAAGATCCTAACTCTACAGTCGCCTCTGATGTACAGGCGTTGTTGACTGCGGACTTTGAGATCGGTCACTACATCCGCGAGCGCGTCGTGTCTCGTGCCGTGCTGCTCTACACCGGCGAGGGACTCGAGGATGATGACGATGACGATTATGAAGAAGAGGAGGAAGAGGAATGCTCGATGGAGGAGAGCGAAGACGATGAGCCGGCGCCTCGGAGACGAACCAAGAAACCCGGCAAGGGACCTGCCGAGAACCCCGCTGAGTGCAAACAGCAGTAG
Protein
MGTVERSGDDHTSEMESAEEEEVVGSGELAQHLLKSGVTRNEMIAAITNRLHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYEKLYKPLYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGKNVTVKTIKKKQKHKSRGSVRTVTKSVQADSFFNFFNPPTLPEDPNSTVASDVQALLTADFEIGHYIRERVVSRAVLLYTGEGLEDDDDDDYEEEEEEECSMEESEDDEPAPRRRTKKPGKGPAENPAECKQQ

Summary

Similarity
Belongs to the nucleosome assembly protein (NAP) family.
EMBL
DQ443133    ABF51222.1    DQ311294    ABD36238.1    BABH01022211    ODYU01000952    + More
SOQ36482.1    RSAL01000016    RVE53047.1    GDQN01008881    GDQN01004190    JAT82173.1    JAT86864.1    GAIX01003587    JAA88973.1    AGBW02008491    OWR53231.1    AB264720    BAG30794.1    KQ459585    KPI98203.1    KQ460627    KPJ13468.1    JTDY01000452    KOB77114.1    KK852446    KDR23730.1    GEBQ01014564    JAT25413.1    GEBQ01006791    JAT33186.1    KQ762962    OAD55188.1    QCYY01002425    ROT70439.1    NEVH01020348    PNF21402.1    GEZM01052548    JAV74445.1    GBYB01011123    JAG80890.1    MH366291    QBB02100.1    ADTU01013487    GDRN01015154    JAI67851.1    KZ288219    PBC32287.1    JR047363    AEY60392.1    KQ435066    KZC14337.1    KK107064    EZA60849.1    KQ976401    KYM92378.1    KQ978625    KYN29588.1    GEDC01012065    JAS25233.1    KQ978501    KYM93447.1    GL888292    EGI63108.1    QOIP01000008    RLU19501.1    KQ982080    KYQ60316.1    KQ981490    KYN41203.1    KQ435728    KOX77758.1    GL439118    EFN67785.1    GL762454    EFZ21423.1    NNAY01002197    OXU21831.1    GDJX01017381    JAT50555.1    LBMM01000137    KMR04792.1    GL445323    EFN89824.1    KQ971338    KYB27922.1    GDIQ01267222    JAJ84502.1    KQ414648    KOC66316.1    APGK01055882    APGK01055883    KB741270    ENN71414.1    GDIP01087305    JAM16410.1    GDIQ01247005    JAK04720.1    BT126846    AEE61808.1    GL732523    EFX90170.1    GDIP01154501    LRGB01013583    JAJ68901.1    KZR99454.1    GDIQ01146334    JAL05392.1    GDIQ01195853    JAK55872.1    GDIP01231552    JAI91849.1    GDIQ01217752    JAK33973.1    JH432078    GDIP01036113    JAM67602.1    GDIQ01111691    JAL40035.1    GDIP01000131    JAN03585.1    IACF01000858    LAB66601.1    GDIQ01162129    JAK89596.1    GDIQ01111692    JAL40034.1    GDIQ01010758    JAN83979.1    GDIQ01232952    JAK18773.1    DS234991    EEB09959.1    GECZ01027533    JAS42236.1    GDIQ01232953    JAK18772.1    GEBQ01021446    JAT18531.1    GDIQ01045722    JAN49015.1    GDIQ01213257    JAK38468.1    GFXV01000853    MBW12658.1    RQTK01000109    RUS87503.1    GECL01003222    JAP02902.1    GDIQ01049021    JAN45716.1    GFTR01005582    JAW10844.1    GGMR01002829    MBY15448.1    ABLF02039073    GBGD01001851    JAC87038.1    GDIP01211096    JAJ12306.1    SAUD01000314    RXG73541.1    ACPB03005987    JH816918    EKC37417.1    GDIQ01099085    JAL52641.1    GDIQ01111693    JAL40033.1    NEDP02001812    OWF52380.1    GDIQ01111694    JAL40032.1    SAUD01018030    RXG58663.1    GDIQ01251749    JAJ99975.1    HAEF01012083    SBR53242.1    HAEH01007926    SBR83147.1    HAED01003070    HAEE01004726    SBQ88959.1    HADZ01021264    HAEA01000461    SBP85205.1   
Pfam
PF00956   NAP
Interpro
IPR002164   NAP_family        + More
IPR037231   NAP-like_sf       
SUPFAM
SSF143113   SSF143113       
PDB
6N2G     E-value=1.06684e-42,     Score=436

Ontologies

Topology

Length:
395
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00038
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.01017
outside
1  -  395
 
 

Population Genetic Test Statistics

Pi
169.201609
Theta
163.430671
Tajima's D
-0.382169
CLR
0.464937
CSRT
0.267986600669966
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 LHAEAMASLPPNVR 100.00 3e-05
26280517 AVPAEEEPREITIDEYK 100.00 0.002
25044914 AVQNAAITEGEEK 100.00 0.002
27102218 GCEINWNAGK 100.00 0.002
28467696 AVQNAAITEGEEK 100.00 0.002
28556443 AIEPPMDPNVK 100.00 0.002
26822097 IHAEAMASIPPNVR 100.00 0.002
26280517 GIHPTVISDGFQK 100.00 0.002
25044914 GIPCTYVDFTAVNYVMK 100.00 0.002
24402669 GIPAFTDIPAAIK 100.00 0.002
28556443 LYKPLYEK 100.00 0.005
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