Gene

KWMTBOMO08306

Annotation

hypothetical_protein_M513_10814?_partial_[Trichuris_suis]

Location

Bomo_Chr14(+):4954015-4958679      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.98

CDS

ATGGAGGCAAACGAACAATTAGTAAGAGAAGGAAATACACTGTTACAAGAACAAAATGCCATCCTAAAGGCTGAATTACAAAAACTTAAAATGCAAGGCATCGATAAAACGGACCCACCCCCCACAGACCCATTATTTCCTCAACCTACCTCAGTATGCAGAGTAGCCATAAAACTTCCTCCCTTCTGGCCTGATCGACCTGCAATTTGGTTTGCTCAGGTAGAGGCACAGTTCTCGATTTCAGGCATCTCCGCTGACCGGACTAAATTTAACTACGTGATTGCTCAGTTAGATACCCGAGTTATTGGGGAGGTAGAGGACATTATTCTCCAACCATCACCTGAGGACAAATATGGTCGCCTCAAATCCGAGTTGATCCGTAGGTTGTCCACGTCTGAGGAGCAACGTGTCAGGCAACTTGTCAGTGATGTTGAGTTGGGTGACCGCCGTCCTTCGCAGTTTTTACGTTATCTTAGATCGTTGGCAGGAAAAACCCTCACTGATGAAAATTTGCTTCGCCAGCTATGGATGCGTCGCCTCCCACAACATCTCCAAGCAATTTTGGCCGCCCAATCAGAACTCTCGCTGGACAAAGTCGCTGAGCTAGCGAACAAAATTTTGGAAGTTTCGCCTGGTATGGTCGCACCTCATTCATCTGCTGTTTTCTCAGCATGCACGTCTGCAGTCTCACCCCCTTCGTTAGAAGATATCACACGGCGTCTGGATGAGGTCACGCGTCAGCTTGCTGTGCTTACTGCAGAGCGCGGTAGAAATAGGACCCGGGATTTCTCAAACCAGCGACGACGCTCACAAACGCCTGATACCGTTTGGCATTCCGAGAAACGTTTACCGGTGTGA

Protein

MEANEQLVREGNTLLQEQNAILKAELQKLKMQGIDKTDPPPTDPLFPQPTSVCRVAIKLPPFWPDRPAIWFAQVEAQFSISGISADRTKFNYVIAQLDTRVIGEVEDIILQPSPEDKYGRLKSELIRRLSTSEEQRVRQLVSDVELGDRRPSQFLRYLRSLAGKTLTDENLLRQLWMRRLPQHLQAILAAQSELSLDKVAELANKILEVSPGMVAPHSSAVFSACTSAVSPPSLEDITRRLDEVTRQLAVLTAERGRNRTRDFSNQRRRSQTPDTVWHSEKRLPV

Uniprot

A0A085LTM6   A0A085N4U2   A0A085NBV3   A0A0J7K6V3   A0A151IZ47   A0A1Y1MXV9   + More
A0A151J3D2   A0A151ITG2   A0A0J7K6I6   A0A2J7RQK2   A0A085MLI3   A0A2A4J8M7   A0A2J7QJD3   A0A2J7QTC8   A0A2J7RGP3   A0A2J7QH56   A0A2J7PLR6   A0A2J7Q198   E2BBH0   A0A151JCH0   A0A2G8L3A3   A0A2G8LNJ3   A0A0J7K7T5   A0A0L7QK36   W4ZJX1   A0A2J7PML8   A0A2J7PD24   A0A2J7PCS9   T1IE13   A0A026VRX8   A0A2H1WXE7   A0A2A4K2H4   A0A0J7K6V1   A0A2G8L664   A0A1Y1MA44   W4YWZ1   A0A2G8JGE7   A0A1S3CY78   A0A2G8JL30   A0A293MBX1   A0A0P8Y533   A0A0P8ZL89   W4YUC1   W4XIJ0   A0A154PT26   W4Y5A8   A0A0A9YNN7   A0A139WA14   A0A182HB40   A0A0P8Y298   A0A139W8G7   D7GYF3   A0A182G9J3   A0A182H518  

Pubmed

24929829    28004739    20798317    29023486    24508170    17994087    + More
25401762    18362917    19820115    26483478   

EMBL

KL363297    KFD48322.1    KL367555    KFD64488.1    KL367519    KFD66949.1    + More
LBMM01012479    KMQ86203.1    KQ980726    KYN14011.1    GEZM01017686    JAV90494.1    KQ980296    KYN16851.1    KQ981018    KYN10257.1    LBMM01013103    KMQ85816.1    NEVH01000707    PNF43124.1    KL363185    KFD58079.1    NWSH01002598    PCG67884.1    NEVH01013558    PNF28672.1    NEVH01011195    PNF31836.1    NEVH01003759    PNF40011.1    NEVH01014357    PNF27922.1    NEVH01024424    PNF17276.1    NEVH01019603    PNF22346.1    GL447057    EFN86960.1    KQ979048    KYN23218.1    MRZV01001127    MRZV01000236    PIK40395.1    PIK54731.1    MRZV01000025    PIK61772.1    LBMM01012075    KMQ86422.1    KQ414987    KOC58988.1    AAGJ04133382    NEVH01023981    PNF17578.1    NEVH01026394    PNF14234.1    NEVH01026435    PNF14140.1    ACPB03037918    KK111495    EZA46390.1    ODYU01011787    SOQ57731.1    NWSH01000267    PCG77880.1    LBMM01012923    LBMM01012917    KMQ85926.1    KMQ85930.1    MRZV01000203    PIK55728.1    GEZM01036621    JAV82564.1    AAGJ04150373    MRZV01002078    PIK34788.1    MRZV01001674    PIK36447.1    GFWV01018519    MAA43247.1    CH905996    KPU81830.1    CH902629    KPU75574.1    AAGJ04172791    AAGJ04135261    KQ435204    KZC15052.1    AAGJ04112098    GBHO01008962    JAG34642.1    KQ971745    KYB24749.1    JXUM01031600    KQ560927    KXJ80313.1    CH902689    KPU72637.1    KQ973343    KXZ75568.1    GG695519    EFA13383.1    JXUM01049417    KQ561603    KXJ78027.1    JXUM01111110    KQ565471    KXJ70931.1   

Proteomes

UP000036403    UP000078492    UP000235965    UP000218220    UP000008237    UP000230750    + More
UP000053825    UP000007110    UP000015103    UP000053097    UP000079169    UP000007801    UP000076502    UP000007266    UP000069940    UP000249989   

Pfam

PF00498   FHA        + More
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00665   rve
PF10551   MULE
PF00077   RVP

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR000253   FHA_dom       
IPR008984   SMAD_FHA_dom_sf       
IPR001969   Aspartic_peptidase_AS       
IPR000477   RT_dom       
IPR034132   RP_Saci-like       
IPR041588   Integrase_H2C2       
IPR041577   RT_RNaseH_2       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR001995   Peptidase_A2_cat       
IPR012337   RNaseH-like_sf       
IPR018289   MULE_transposase_dom       
IPR018061   Retropepsins       

SUPFAM

SSF50630   SSF50630        + More
SSF49879   SSF49879       
SSF53098   SSF53098       

Gene 3D

2.40.70.10     3.30.420.10    

CDD

cd00060  FHA
cd06094  RP_Saci_like

ProteinModelPortal

A0A085LTM6   A0A085N4U2   A0A085NBV3   A0A0J7K6V3   A0A151IZ47   A0A1Y1MXV9   + More
A0A151J3D2   A0A151ITG2   A0A0J7K6I6   A0A2J7RQK2   A0A085MLI3   A0A2A4J8M7   A0A2J7QJD3   A0A2J7QTC8   A0A2J7RGP3   A0A2J7QH56   A0A2J7PLR6   A0A2J7Q198   E2BBH0   A0A151JCH0   A0A2G8L3A3   A0A2G8LNJ3   A0A0J7K7T5   A0A0L7QK36   W4ZJX1   A0A2J7PML8   A0A2J7PD24   A0A2J7PCS9   T1IE13   A0A026VRX8   A0A2H1WXE7   A0A2A4K2H4   A0A0J7K6V1   A0A2G8L664   A0A1Y1MA44   W4YWZ1   A0A2G8JGE7   A0A1S3CY78   A0A2G8JL30   A0A293MBX1   A0A0P8Y533   A0A0P8ZL89   W4YUC1   W4XIJ0   A0A154PT26   W4Y5A8   A0A0A9YNN7   A0A139WA14   A0A182HB40   A0A0P8Y298   A0A139W8G7   D7GYF3   A0A182G9J3   A0A182H518  

KEGG

101745414    no KO assigned | (RefSeq) uncharacterized LOC101745414

GO

GO:0004190   GO:0016021   GO:0015074   GO:0005634   GO:0003676  

Length:

285

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.002

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04006

outside

1  -  285

 

 

Pi

294.261001

Theta

20.553696

Tajima's D

2.957447

CLR

0.096752

CSRT

0.975351232438378

Interpretation

Possibly Balancing Selection