Gene

KWMTBOMO08305

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr14(-):4922945-4924094      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.059

CDS

ATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGCGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTGCGAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGATAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATCGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCAAAGCGGTACTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAAGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTCTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTACTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSAVQERRSKLVSEVENSLGRVCEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQKRAVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR

Uniprot

Q6UV17   Q5KTM5   A0A437B9X9   A0A3S2LP03   A0A3S2KYN2   A0A3S2LQP1   + More
A0A437BF96   A0A3S2NMS5   A0A3S2NHP4   A0A437B259   A0A437ARG3   A0A3S2NTH0   A0A3S2NMX8   A0A2H1VFZ3   A0A3S2P9Q3   A0A437BUJ7   A0A0P4VXU0   A0A3D5S1K1   J9GT67   T2M6M7   A0A1Y1S3P2   A0A3S2TFH4   A0A1E1XGQ7   A0A131Y4I8   A0A147BU27   A0A131Y4Q4   A0A147BJ69   A0A1E1XN74   A0A1E1XNL1   A0A090XE26   A0A1E1XNW6   A0A1E1X2T1   A0A147BNQ9   A0A0P4VVV8   A0A131XQR9   A0A131Y3E3   A0A131XT39   A0A147BJQ0   A0A147BQ97   A0A1E1X2P5   A0A1G4M3N1   A0A1E1XPS6   A0A131XRE4   A0A0P4VTV9   A0A2G8KET5   A0A147BJZ1   A0A147BMA3   A0A2B4RTL1   A0A2H9T3F5   A0A2H9T4Y5   A0A147BNC9   A0A1G4M5I2   A0A1E1XVU2   A0A2H9T4F1   A0A147BBR8   A0A147BLD9   A0A1E1XM20   A0A1E1X2R3   A0A147BKN8   A0A2H9T4Q5   A0A0K8RPQ6   A0A2B4RFN8   A0A1E1XGC7   A0A147BB29   A0A147BK71   A0A1E1WW75   A0A2I0UC10   A0A147BRL4   A0A2H9T5P0   A0A1E1XN53  

Pubmed

30148503    23251564    24065732    28345194    28503490    29209593    + More
25970599    29652888    29023486    29150518   

EMBL

AY359886    AAQ57129.1    AB126052    BAD86652.1    RSAL01000109    RVE47192.1    + More
RSAL01002067    RVE40593.1    RSAL01000487    RVE41561.1    RSAL01000422    RVE41792.1    RSAL01000072    RVE49051.1    RSAL01000002    RVE54942.1    RSAL01003136    RVE40332.1    RSAL01000210    RVE44225.1    RSAL01002827    RVE40408.1    RSAL01000090    RVE48098.1    RVE55041.1    RVE55094.1    ODYU01002162    SOQ39302.1    RSAL01000164    RVE45343.1    RSAL01000007    RVE54134.1    GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    AMCI01002135    EJX03495.1    HAAD01001474    CDG67706.1    LWDP01000391    ORD92879.1    RSAL01000193    RVE44603.1    GFAC01000919    JAT98269.1    GEFM01002394    JAP73402.1    GEGO01001118    JAR94286.1    GEFM01002324    JAP73472.1    GEGO01004630    JAR90774.1    GFAA01002657    JAU00778.1    GFAA01002514    JAU00921.1    GBIH01002577    JAC92133.1    GFAA01002479    JAU00956.1    GFAC01005646    JAT93542.1    GEGO01003312    JAR92092.1    GDRN01111277    JAI56804.1    GEFM01006417    JAP69379.1    GEFM01002419    JAP73377.1    GEFM01006421    JAP69375.1    GEGO01004433    JAR90971.1    GEGO01002473    JAR92931.1    GFAC01005665    JAT93523.1    FLMD02000154    SCV66010.1    GFAA01002385    JAU01050.1    GEFM01005882    JAP69914.1    GDRN01111334    JAI56796.1    MRZV01000639    PIK46517.1    GEGO01004295    JAR91109.1    GEGO01003518    JAR91886.1    LSMT01000297    PFX20951.1    NSIT01000412    PJE77717.1    NSIT01000218    PJE78268.1    GEGO01003111    JAR92293.1    FLMD02000280    SCV66640.1    GFAA01000066    JAU03369.1    NSIT01000271    PJE78081.1    GEGO01007187    JAR88217.1    GEGO01003794    JAR91610.1    GFAA01003161    JAU00274.1    GFAC01005670    JAT93518.1    GEGO01004056    JAR91348.1    NSIT01000239    PJE78188.1    GADI01001229    JAA72579.1    LSMT01000588    PFX15986.1    GFAC01000861    JAT98327.1    GEGO01007438    JAR87966.1    GEGO01004248    JAR91156.1    GFAC01007905    JAT91283.1    KZ505886    PKU43598.1    GEGO01002025    JAR93379.1    NSIT01000164    PJE78524.1    GFAA01002726    JAU00709.1   

Proteomes

UP000283053    UP000230750    UP000225706   

PRIDE

Q6UV17    Q5KTM5   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01585   G-patch
PF04939   RRS1
PF01873   eIF-5_eIF-2B
PF08159   NUC153
PF00458   WHEP-TRS
PF03372   Exo_endo_phos
PF01425   Amidase

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR028082   Peripla_BP_I       
IPR007023   Ribosom_reg       
IPR016190   Transl_init_fac_IF2/IF5_Zn-bd       
IPR002735   Transl_init_fac_IF2/IF5       
IPR016189   Transl_init_fac_IF2/IF5_N       
IPR036291   NAD(P)-bd_dom_sf       
IPR002347   SDR_fam       
IPR020904   Sc_DH/Rdtase_CS       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR000738   WHEP-TRS_dom       
IPR009068   S15_NS1_RNA-bd       
IPR000120   Amidase       
IPR036928   AS_sf       
IPR023631   Amidase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928       
SSF53822   SSF53822       
SSF75689   SSF75689       
SSF100966   SSF100966       
SSF51735   SSF51735       
SSF50978   SSF50978       
SSF47060   SSF47060       
SSF75304   SSF75304       

Gene 3D

3.60.10.10     3.30.70.330     3.90.1300.10    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q6UV17   Q5KTM5   A0A437B9X9   A0A3S2LP03   A0A3S2KYN2   A0A3S2LQP1   + More
A0A437BF96   A0A3S2NMS5   A0A3S2NHP4   A0A437B259   A0A437ARG3   A0A3S2NTH0   A0A3S2NMX8   A0A2H1VFZ3   A0A3S2P9Q3   A0A437BUJ7   A0A0P4VXU0   A0A3D5S1K1   J9GT67   T2M6M7   A0A1Y1S3P2   A0A3S2TFH4   A0A1E1XGQ7   A0A131Y4I8   A0A147BU27   A0A131Y4Q4   A0A147BJ69   A0A1E1XN74   A0A1E1XNL1   A0A090XE26   A0A1E1XNW6   A0A1E1X2T1   A0A147BNQ9   A0A0P4VVV8   A0A131XQR9   A0A131Y3E3   A0A131XT39   A0A147BJQ0   A0A147BQ97   A0A1E1X2P5   A0A1G4M3N1   A0A1E1XPS6   A0A131XRE4   A0A0P4VTV9   A0A2G8KET5   A0A147BJZ1   A0A147BMA3   A0A2B4RTL1   A0A2H9T3F5   A0A2H9T4Y5   A0A147BNC9   A0A1G4M5I2   A0A1E1XVU2   A0A2H9T4F1   A0A147BBR8   A0A147BLD9   A0A1E1XM20   A0A1E1X2R3   A0A147BKN8   A0A2H9T4Q5   A0A0K8RPQ6   A0A2B4RFN8   A0A1E1XGC7   A0A147BB29   A0A147BK71   A0A1E1WW75   A0A2I0UC10   A0A147BRL4   A0A2H9T5P0   A0A1E1XN53  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0003723   GO:0016021   GO:0005634   GO:0004040  

PANTHER

PTHR13288   PTHR17602   PTHR14927   PTHR11895  

Length:

329

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.7135

Exp number, first 60 AAs:

0.71344

Total prob of N-in:

0.04468

outside

1  -  329

 

 

Pi

29.633994

Theta

30.831558

Tajima's D

-0.184479

CLR

0.098275

CSRT

0.32098395080246

Interpretation

Uncertain