Gene

KWMTBOMO08302

Pre Gene Modal

BGIBMGA009253

Annotation

PREDICTED:_protein_goliath_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr14(+):4674109-4770184      View in EpiBrowser

Full name

Protein goliath      

Alternative Name

Protein g1

Location in the cell

PlasmaMembrane   Reliability : 2.255

CDS

ATGCGTGCGGAAGAATTGTGGTCTGGTTTAGCGGCTCTGGGATGGATGGTTCTGGTGGTGAATTGCCATACGCCCGGGAGCGAACTGGAGACAGTACGTTACGGCCCGACAGATGAGCGCTTGTCCAAGACGATAGCGAATATCAACATAACGTACACTGACGAGCACGGAGTTGTGTATTCGGAAATATCGGAGTCCGGAAAATATGGCGAAGGATTCGTTGGGTCATCGAGCGGGGTCGGCGTGCACATCAGAGCCAAGGGCCCGGGCGGGGAAAGGGACCACACCGGCTGCTCGTGGCCCCTGCTGTCAACCACCGCGCCCAATGAACCTTTACCTCAAGAGCCCTGGATTGCTCTCATAAGACGAGGCAGCTGCAATTTTGAACTAAAGGTGCAGAACGCGTGGCGCGCCAACGCTACCGCAGTCCTTATATACAACGACCGCGATGCTCCAGATCTCGACAAAATGAAGCTGTCCACGGATAACGGACGTAATATAAGTGCCGTGTTCACGTACAAGTGGAAGGGAGAAGAGATAGCGCGTCTCATTGACAACGGCACCAGAGTCACCATCGCTATAATCAAAGGGAGGTCCTTCGCAATCATACCCAAAGACTTCAACAAGACATCAGTACTGTTCGTGTCTATATCTTTTATCGTGCTCATGGTTATATCATTGGCGTGGCTCGTCTTCTACTACATACAACGTTTCCGATATATACACGCCAAAGACAGGCTCTCTAAACGTCTGTGCTGCGCTGCGAAGAAAGCTTTATCTAAAATTCCCGTTAAGAGCTTAAAGACTGAAGACAGAGAAGTGCAAGGAGACGGCGAATGCTGTGCTATATGTATAGAGCCTTACAAAGTATCAGAAACATTGAGGTCTCTGCCGTGCAGGCACGATTTCCATAAGAACTGCATAGACCCGTGGCTGTTGGAGCATCGGACGTGTCCCATGTGCAAGATGGACATACTAAAGTACTACGGGTTTGTGTTTACTGGGAGTCAGGAGAGTATTCTGCAGTTAGAAGTGGAGGAAACGAGAGGCCACGCATTGAGTCCCTCTCGTAATAGACATCCATTAACTTTGTTAACGAGCGACAACTCTTACGACGAGGCGATCAGCGAACGAAGCAGTCGCGCTTCCTCGCCGGATCAACTGGTTCCGCGCTGTCCCCACGAGACCAGATCATGCACATCAACTCCATCCGGATCACCGCGACCAAATACCTCGCGACAACACGACGTCGCCTCCACCAGCACCTCCAACGCTCAGGAGTGA

Protein

MRAEELWSGLAALGWMVLVVNCHTPGSELETVRYGPTDERLSKTIANINITYTDEHGVVYSEISESGKYGEGFVGSSSGVGVHIRAKGPGGERDHTGCSWPLLSTTAPNEPLPQEPWIALIRRGSCNFELKVQNAWRANATAVLIYNDRDAPDLDKMKLSTDNGRNISAVFTYKWKGEEIARLIDNGTRVTIAIIKGRSFAIIPKDFNKTSVLFVSISFIVLMVISLAWLVFYYIQRFRYIHAKDRLSKRLCCAAKKALSKIPVKSLKTEDREVQGDGECCAICIEPYKVSETLRSLPCRHDFHKNCIDPWLLEHRTCPMCKMDILKYYGFVFTGSQESILQLEVEETRGHALSPSRNRHPLTLLTSDNSYDEAISERSSRASSPDQLVPRCPHETRSCTSTPSGSPRPNTSRQHDVASTSTSNAQE

Description

Regulation of gene expression during embryonic mesoderm formation. Putative role as transcription factor.

Keywords

Alternative splicing   Complete proteome   Developmental protein   DNA-binding   Membrane   Metal-binding   Reference proteome   Signal   Transcription   Transcription regulation   Transmembrane   Transmembrane helix   Zinc   Zinc-finger  

Feature

chain  Protein goliath
splice variant  In isoform C.

Uniprot

A0A3S2M767   A0A212EH97   A0A194RC27   A0A194PXX5   D2A1E8   A0A1B6DHR0   + More
A0A1Y1M0X6   J9K827   A0A2S2QHA3   A0A1B6EDU2   A0A1B6E4H6   A0A1B6DIP4   A0A1B6F3T8   A0A1S4FVT7   A0A182V8R7   A0A453Z0L3   A0A1B6IGP3   A0A0P5Z6D6   A0A0P5YP19   A0A182F458   A0A1B6JTW9   E9HC82   A0A0P6GWM5   A0A1B6FJY8   A0A0P5BXF3   A0A2M3ZE25   A0A2M4BJT6   Q5TUG4   A0A023ETC3   A0A2M4CGZ8   A0A2M4CGF9   A0A2M4CGG0   A0A2M4AB69   A0A2M4ABB7   T1J3Y4   Q16MD5   A0A0P5EA85   A0A1Y9H9H6   A0A453Z0X3   A0A182HX16   A0A182PSD2   T1PJK6   A0A1I8MG78   A0A226E6X8   A0A182KGY3   A0A1Z5LFW6   A0A0J9RM83   A0A0J9RKN1   Q06003   A0A1Z5KU94   A0A1I8NSU6   A0A182R910   B3NRA2   A0A0A1XJ46   B4PBZ6   A0A293MZG4   A0A182W877   Q06003-4   B4KSS0   B4IHD0   A0A182YE34   A0A1W4V5W9   A0A3B0JHF5   B4LNU5   Q28Z87   T1PB96   A0A034VB16   V5H2L8   A0A131Y031   A0A0K8V8G7   A0A3Q0JKC6   A0A3B0IY81   B3MCD9   A0A1B0BGP2   Q06003-3   A0A0B4K8B7   A0A1A9WV64   B4GI37   B4MPL8   A0A0L0CC15   B4JVJ7   R7TQG9  

Pubmed

22118469    26354079    18362917    19820115    28004739    17510324    + More
12364791    21292972    24945155    25315136    28528879    22936249    10731132    12537572    12537569    8462875    17994087    25830018    17550304    18057021    25244985    15632085    25348373    25765539    29652888    12537568    12537573    12537574    16110336    17569856    17569867    26108605    23254933   

EMBL

RSAL01000016    RVE53042.1    AGBW02014927    OWR40852.1    KQ460627    KPJ13461.1    + More
KQ459585    KPI98196.1    KQ971338    EFA01541.2    GEDC01012082    JAS25216.1    GEZM01045043    JAV77955.1    ABLF02018593    ABLF02018595    ABLF02019204    ABLF02019206    ABLF02019207    GGMS01007349    MBY76552.1    GEDC01001238    JAS36060.1    GEDC01031480    GEDC01004466    JAS05818.1    JAS32832.1    GEDC01011793    JAS25505.1    GECZ01024932    JAS44837.1    AAAB01008849    GECU01025788    GECU01021631    JAS81918.1    JAS86075.1    GDIP01048315    LRGB01001569    JAM55400.1    KZS11735.1    GDIP01055915    JAM47800.1    GECU01005087    JAT02620.1    GL732619    EFX70577.1    GDIQ01028417    JAN66320.1    GECZ01019278    JAS50491.1    GDIP01182642    JAJ40760.1    GGFM01006004    MBW26755.1    GGFJ01004195    MBW53336.1    EAL41047.3    GAPW01001045    JAC12553.1    GGFL01000253    MBW64431.1    GGFL01000254    MBW64432.1    GGFL01000252    MBW64430.1    GGFK01004713    MBW38034.1    GGFK01004729    MBW38050.1    JH431832    CH477865    EAT35498.1    GDIP01145996    JAJ77406.1    AXCN02002284    APCN01005116    KA648118    AFP62747.1    LNIX01000006    OXA52717.1    GFJQ02000677    JAW06293.1    CM002911    KMY96524.1    KMY96521.1    KMY96522.1    KMY96523.1    AE013599    AY069169    M97204    GFJQ02008307    JAV98662.1    CH954179    EDV57121.1    GBXI01002933    JAD11359.1    CM000158    EDW92650.1    KRK00624.1    GFWV01020600    MAA45328.1    CH933808    EDW10569.2    KRG05321.1    KRG05322.1    KRG05323.1    CH480838    EDW49306.1    OUUW01000001    SPP72666.1    CH940648    EDW60165.2    CM000071    EAL25727.3    KA645248    KA649138    AFP59877.1    AFP63767.1    GAKP01019660    GAKP01019658    JAC39292.1    GANP01015996    JAB68472.1    GEFM01004575    GEGO01005300    JAP71221.1    JAR90104.1    GDHF01018958    GDHF01017444    GDHF01016739    GDHF01014475    GDHF01014324    JAI33356.1    JAI34870.1    JAI35575.1    JAI37839.1    JAI37990.1    SPP72667.1    CH902619    EDV37263.2    JXJN01013915    AFH08270.1    CH479183    EDW36157.1    CH963849    EDW74057.1    JRES01000628    KNC29796.1    CH916375    EDV98465.1    AMQN01011584    KB308963    ELT95899.1   

Proteomes

UP000283053    UP000007151    UP000053240    UP000053268    UP000007266    UP000007819    + More
UP000075903    UP000076858    UP000069272    UP000000305    UP000007062    UP000008820    UP000075886    UP000075840    UP000075885    UP000095301    UP000198287    UP000075881    UP000000803    UP000095300    UP000075900    UP000008711    UP000002282    UP000075920    UP000009192    UP000001292    UP000076408    UP000192221    UP000268350    UP000008792    UP000001819    UP000079169    UP000007801    UP000092460    UP000091820    UP000008744    UP000007798    UP000037069    UP000001070    UP000014760   

PRIDE

Q06003   

Pfam

PF13639   zf-RING_2        + More
PF02225   PA
PF00611   FCH
PF07653   SH3_2
PF01693   Cauli_VI
PF14604   SH3_9

Interpro

IPR001841   Znf_RING        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR003137   PA_domain       
IPR031160   F_BAR       
IPR001452   SH3_domain       
IPR027267   AH/BAR_dom_sf       
IPR036770   Ankyrin_rpt-contain_sf       
IPR001060   FCH_dom       
IPR035460   FCHSD_SH3_1       
IPR011320   RNase_H1_N       
IPR036028   SH3-like_dom_sf       
IPR020683   Ankyrin_rpt-contain_dom       

SUPFAM

SSF103657   SSF103657        + More
SSF50044   SSF50044       
SSF48403   SSF48403       

Gene 3D

3.30.40.10     1.20.1270.60     1.25.40.20    

CDD

cd00204  ANK
cd11761  SH3_FCHSD_1

ProteinModelPortal

A0A3S2M767   A0A212EH97   A0A194RC27   A0A194PXX5   D2A1E8   A0A1B6DHR0   + More
A0A1Y1M0X6   J9K827   A0A2S2QHA3   A0A1B6EDU2   A0A1B6E4H6   A0A1B6DIP4   A0A1B6F3T8   A0A1S4FVT7   A0A182V8R7   A0A453Z0L3   A0A1B6IGP3   A0A0P5Z6D6   A0A0P5YP19   A0A182F458   A0A1B6JTW9   E9HC82   A0A0P6GWM5   A0A1B6FJY8   A0A0P5BXF3   A0A2M3ZE25   A0A2M4BJT6   Q5TUG4   A0A023ETC3   A0A2M4CGZ8   A0A2M4CGF9   A0A2M4CGG0   A0A2M4AB69   A0A2M4ABB7   T1J3Y4   Q16MD5   A0A0P5EA85   A0A1Y9H9H6   A0A453Z0X3   A0A182HX16   A0A182PSD2   T1PJK6   A0A1I8MG78   A0A226E6X8   A0A182KGY3   A0A1Z5LFW6   A0A0J9RM83   A0A0J9RKN1   Q06003   A0A1Z5KU94   A0A1I8NSU6   A0A182R910   B3NRA2   A0A0A1XJ46   B4PBZ6   A0A293MZG4   A0A182W877   Q06003-4   B4KSS0   B4IHD0   A0A182YE34   A0A1W4V5W9   A0A3B0JHF5   B4LNU5   Q28Z87   T1PB96   A0A034VB16   V5H2L8   A0A131Y031   A0A0K8V8G7   A0A3Q0JKC6   A0A3B0IY81   B3MCD9   A0A1B0BGP2   Q06003-3   A0A0B4K8B7   A0A1A9WV64   B4GI37   B4MPL8   A0A0L0CC15   B4JVJ7   R7TQG9  

PDB

5ZC4     E-value=2.5972e-10,     Score=157

KEGG

101736508    no KO assigned | (RefSeq) protein goliath

GO

GO:0016021   GO:0016874   GO:0061630   GO:0006511   GO:0008270   GO:0005768   GO:0016567   GO:0003677   GO:0001707   GO:0005634   GO:0005515   GO:0043565   GO:0003917   GO:0016887   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

Subcellular location

Membrane  

SignalP

Position:   1 - 22,         Likelihood:  0.858832

 

 

Length:

427

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

24.17819

Exp number, first 60 AAs:

1.28651

Total prob of N-in:

0.21510

outside

1  -  211

TMhelix

212  -  234

inside

235  -  427

 

 

Pi

233.094998

Theta

165.345046

Tajima's D

1.199478

CLR

0.259305

CSRT

0.714414279286036

Interpretation

Uncertain