Silkworm Genome Informatics Database

Gene

KWMTBOMO08297

Pre Gene Modal

BGIBMGA009546

Annotation

PREDICTED:_paired_box_protein_Pax-6-like_[Bombyx_mori]

Location

Bomo_Chr14(+):4599939-4610698 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.331

CDS

ATGAATGTAAAACATTTATACGAGGAGCCTCTTGAAGGTCTCGAAGGTATACATTCTGACGAGACCGGTTCCGGAGACAACTCGAATGCTGGTTCGAGCGGTGCTGATGACGACGCAGCACGACTCAGACTAAAACGGAAACTGCAGAGAAACCGCACTAGCTTCACCAACGAGCAAATCGACAGTTTGGAGAGAGAATTCGAAAGGACGCATTACCCGGACGTGTTCGCAAGAGAAAGACTCGCAGCAAAAATCGGGCTACCTGAGGCCAGAATACAGGTGTGGTTCTCGAATCGTCGCGCGAAGTGGAGGCGCGAGGAGAAGATCCGGTCGCAGCGCCGCAGCCCCGAGTGCGGGTACCAGCCGCCCCCCGCGCACCCCTCGCCGCCCGCGCACGTGCAACCCGCGCACCCCGCGCACCCTGCACACCCGCACCAGCCGTACCAGCCCGCGCTCAACGTGGACGCCTACAGCCCGCTGACTCCCATGGGCTACGGAGGAGGTATGGTCTCAGAGTCGGCGGTGTGCGAAGGCGCCGACTCCGATCTCTGCAAGGGAGGATTCCTGGGGTACCCGCGCTACGAGCTCGGGTACCGGCAGCCGGCACACCCGTACGTCAACCACGGATACCAGCACGAGCCTGCTTCTCCTCCACCAGAGCTGGGCGGTCTACTTGGTGCTGGAGTATCAGTTCCGCTCACCGTACCCGGGCAGGACACGCAGCAGTACTGGTCGCGGCTACAGTGA

Protein

MNVKHLYEEPLEGLEGIHSDETGSGDNSNAGSSGADDDAARLRLKRKLQRNRTSFTNEQIDSLEREFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKIRSQRRSPECGYQPPPAHPSPPAHVQPAHPAHPAHPHQPYQPALNVDAYSPLTPMGYGGGMVSESAVCEGADSDLCKGGFLGYPRYELGYRQPAHPYVNHGYQHEPASPPPELGGLLGAGVSVPLTVPGQDTQQYWSRLQ

Uniprot

H9JJ45 A0A2H1VJN6 A0A2A4J4H3 A0A194Q454 A0A437BS23 A0A194R6L5 + More
A0A212EPT3 A0A139WJJ9 A8VFE9 U4UE09 A0A2J7PCH4

Pubmed

19121390 26354079 22118469 18362917 19820115 23537049 + More

EMBL

BABH01040274 ODYU01002917 SOQ41016.1 NWSH01003318 PCG66568.1 KQ459585 + More
KPI98190.1 RSAL01000016 RVE53039.1 KQ460627 KPJ13458.1 AGBW02013389 OWR43503.1 KQ971338 KYB27997.1 EU169112 ABW23132.1 KB632241 ERL90548.1 NEVH01027059 PNF14038.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000283053 UP000053240 UP000007151 + More
UP000007266 UP000030742 UP000235965

PRIDE

H9JJ45

Pfam

PF00046 Homeodomain + More
PF00292 PAX

Interpro

IPR009057   Homeobox-like_sf        + More
IPR001356   Homeobox_dom
IPR000047   HTH_motif
IPR017970   Homeobox_CS
IPR001523   Paired_dom
IPR036388   WH-like_DNA-bd_sf

SUPFAM

SSF46689 SSF46689

Gene 3D

1.10.10.10

CDD

cd00086 homeodomain
cd00131 PAX

ProteinModelPortal

H9JJ45 A0A2H1VJN6 A0A2A4J4H3 A0A194Q454 A0A437BS23 A0A194R6L5 + More
A0A212EPT3 A0A139WJJ9 A8VFE9 U4UE09 A0A2J7PCH4

PDB

2CUE E-value=9.85075e-26, Score=287

KEGG

101745187 K08031 paired box protein 6 | (RefSeq) paired box protein Pax-6-like

GO

GO:0043565 GO:0006355 GO:0005634 GO:0007275 GO:0003677 GO:0003917 GO:0016887 GO:0030145 GO:0006412 GO:0016876 GO:0043039

Subcellular location

Nucleus

Length:

248

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00225

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04555

outside

1 - 248

Pi

338.712946

Theta

165.758614

Tajima's D

3.256079

CLR

0.457923

CSRT

0.988500574971251

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics