Gene

KWMTBOMO08295

Pre Gene Modal

BGIBMGA009432

Annotation

PREDICTED:_paired_box_protein_Pax-6-like_[Bombyx_mori]

Location

Bomo_Chr14(+):4538395-4547084      View in EpiBrowser

Full name

Paired box protein Pax-6      

Alternative Name

Protein eyeless

Transcription factor

PAX

Location in the cell

Nuclear   Reliability : 2.011

CDS

ATGCTGCCAGCGCAGCAGCTCGCGCCGATCAGTCCATGGCCCCCCGACGGGAACCTCTTAGACCGAATGGACGATATCGCCCATAAAGGTCACAGCGGTGTTAACCAGCTCGGCGGCGTGTTTGTAGGAGGACGACCTCTGCCGGACTCGACGCGGCAGAAGATCGTGGAACTGGCGCACTCCGGAGCTAGACCCTGCGACATCAGCCGCATCCTGCAGGTCTCCAACGGCTGCGTCTCCAAAATACTAGGCAGGTATTACGAGACTGGTTCGATAAGACCTCGCGCGATAGGTGGCTCGAAGCCCCGCGTAGCCACAGCGGAGGTAGTTAGCAAGATCGCTCAGTACAAGAGGGAGTGCCCTTCGATTTTCGCCTGGGAGATCCGGGACCGTCTGCTCAGTGAAGGGGTCTGCACATCTGATAACATACCTAGTGGCCTGTATTTCCTGTAA

Protein

MLPAQQLAPISPWPPDGNLLDRMDDIAHKGHSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATAEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTSDNIPSGLYFL

Description

Involved in eye morphogenesis.

Similarity

Belongs to the paired homeobox family.

Keywords

Alternative splicing   Complete proteome   Developmental protein   DNA-binding   Homeobox   Nucleus   Paired box   Polymorphism   Reference proteome   Transcription   Transcription regulation  

Feature

chain  Paired box protein Pax-6
splice variant  In isoform B.

Uniprot

A0A2H1W4X6   A0A2H1VQ93   A0A2A4J4H3   A0A437BS23   A0A194R6L5   A0A336M8V6   + More
A0A2S2PL38   A0A0L7KYB5   A0A2H8TJ58   A0A2S2QA25   A0A0Q5SFB7   A0A1A9XWT8   A0A139WJM1   A0A2J8P433   A0A2J8WGA7   A0A1W2PRS6   T1HH39   A0A0J9S2I8   A0A0Q9XRZ5   A0A1A9UMB5   A0A1B0BIC9   O18381-2   A0A1A9WQ91   A0A1W4VIL3   A0A1A6GL84   A0A1A8N7C8   A0A0R3P1M2   A0A1A8ELL0   A0A1A8BQW4   A0A1A8JEP3   A0A1A8A1R9   A0A3B4EF95   A0A1A9ZM35   A8VFE9   Q4JH21   Q4JH20   B4NHW0   A0A139WJB5   A0A3Q3JCW4   A0A3P8P3Z4   A0A0C9RUZ6   A0A146Y265   A0A3Q2EG28   A0A3Q1HEM7   A0A3Q3E5P3   A0A3B5Q191   A0A3P8P3X4   W5L0M4   A0A0R4IPK2   A0A2R7VZS4   E2AA67   A0A194Q454   A0A1J1I066   W5K0Z4   U6DMI5   A0A146Y203   A0A1A8DEJ2   A0A3Q3AED3   A0A3P8Z636   A0A336MNH4   A0A3Q3CUU7   A0A2P8YRJ5   E0VHY9   A0A3B3X137   A0A3B3U3N5   A0A3Q2PYP8   A0A0D6A9K8   A0A3Q1JI72   A0A0L8FQC6   A0A3B4ZHN0   A0A3B3Z6R5   A0A3P8SF80   A0A3B4GLE5   A0A3Q4GHY8   H2SX91   F6SK70   Q56H36   A0A437DA51   G3TZY7   A0A195BUZ2   G1T0K0   A0A3Q2ZWS1   G1LK37   A0A1S3MKE4   A0A060XJI3   A0A0B5LBD0   A0A132A0J8   F7C9R7   H0WX77   A0A3Q3EVL3   A0A3Q3EVN7   A0A2J8P412   A0A2J8WGD9   E9PKM0   A0A2J8P482   A0A2J8WGE3   A0A1W2PSA8   A0A384A134   A0A2Y9PAJ1   A0A0A9ZJM2  

Pubmed

26354079    26227816    17994087    18362917    19820115    16554811    + More
18669648    20068231    22936249    7914031    10731132    12537572    11778050    15632085    15219154    23542700    25329095    23594743    20798317    25069045    29403074    20566863    25463417    25186727    21551351    20431018    16604056    21993624    20010809    24755649    25627710    26555130    17431167    25401762   

EMBL

ODYU01006357    SOQ48139.1    ODYU01003775    SOQ42956.1    NWSH01003318    PCG66568.1    + More
RSAL01000016    RVE53039.1    KQ460627    KPJ13458.1    UFQT01000258    SSX22478.1    GGMR01017541    MBY30160.1    JTDY01004366    KOB68243.1    GFXV01002378    MBW14183.1    GGMS01005384    MBY74587.1    CH954184    KQS21487.1    KQ971338    KYB27995.1    NBAG03000219    PNI78791.1    NDHI03003391    PNJ68827.1    Z83307    Z95332    ACPB03011549    CM002916    KMZ07280.1    CH933813    KRG07239.1    JXJN01014907    X79492    X79493    AE014135    AF433696    AF433697    AF433698    AF433699    AF433700    AF433701    AF433702    AF433703    AF433704    AF433705    LZPO01087205    OBS66634.1    HAEH01000382    SBR64781.1    CH475402    KRT05107.1    HAEB01001533    SBQ48017.1    HADZ01006086    SBP70027.1    HAED01021674    SBR08408.1    HADY01010554    SBP49039.1    EU169112    ABW23132.1    DQ091188    AAY89857.1    DQ091189    AAY89858.1    CH964272    EDW83610.2    KYB27994.1    GBYB01011481    JAG81248.1    GCES01038144    JAR48179.1    AL929172    BX004784    KK854164    PTY12421.1    GL438030    EFN69647.1    KQ459585    KPI98190.1    CVRI01000037    CRK93603.1    HAAF01011933    CCP83756.1    GCES01038156    GCES01038155    JAR48168.1    HAEA01003353    SBQ31833.1    UFQT01000839    SSX27538.1    PYGN01000410    PSN46870.1    DS235172    EEB12995.1    LC002643    BAQ59166.1    KQ427640    KOF66853.1    AAMC01083900    AAMC01083901    AH014790    AAX56950.1    CM012442    RVE71482.1    KQ976408    KYM91150.1    AAGW02037526    AAGW02037527    AAGW02037528    ACTA01025499    ACTA01033499    ACTA01041498    ACTA01049498    FR905233    CDQ77469.1    KJ957834    AJG44470.1    JXLN01009482    KPM04586.1    JSUE03012491    AAQR03002365    PNI78775.1    PNJ68811.1    PNI78799.1    PNJ68835.1    GBHO01000029    JAG43575.1   

Proteomes

UP000218220    UP000283053    UP000053240    UP000037510    UP000008711    UP000092443    + More
UP000007266    UP000005640    UP000015103    UP000009192    UP000078200    UP000092460    UP000000803    UP000091820    UP000192221    UP000092124    UP000001819    UP000261440    UP000092445    UP000007798    UP000261600    UP000265100    UP000265020    UP000257200    UP000261660    UP000002852    UP000018467    UP000000437    UP000000311    UP000053268    UP000183832    UP000264800    UP000265140    UP000264840    UP000245037    UP000009046    UP000261480    UP000261500    UP000265000    UP000265040    UP000053454    UP000261400    UP000261520    UP000265080    UP000261460    UP000261580    UP000005226    UP000008143    UP000007646    UP000078540    UP000001811    UP000008912    UP000087266    UP000193380    UP000006718    UP000005225    UP000261681    UP000248483   

PRIDE

O18381    Q4JH20    E9PKM0   

Pfam

PF00292   PAX        + More
PF00046   Homeodomain

Interpro

IPR036388   WH-like_DNA-bd_sf        + More
IPR009057   Homeobox-like_sf       
IPR001523   Paired_dom       
IPR017970   Homeobox_CS       
IPR001356   Homeobox_dom       

SUPFAM

SSF46689   SSF46689       

Gene 3D

1.10.10.10    

CDD

cd00131  PAX
cd00086  homeodomain

ProteinModelPortal

A0A2H1W4X6   A0A2H1VQ93   A0A2A4J4H3   A0A437BS23   A0A194R6L5   A0A336M8V6   + More
A0A2S2PL38   A0A0L7KYB5   A0A2H8TJ58   A0A2S2QA25   A0A0Q5SFB7   A0A1A9XWT8   A0A139WJM1   A0A2J8P433   A0A2J8WGA7   A0A1W2PRS6   T1HH39   A0A0J9S2I8   A0A0Q9XRZ5   A0A1A9UMB5   A0A1B0BIC9   O18381-2   A0A1A9WQ91   A0A1W4VIL3   A0A1A6GL84   A0A1A8N7C8   A0A0R3P1M2   A0A1A8ELL0   A0A1A8BQW4   A0A1A8JEP3   A0A1A8A1R9   A0A3B4EF95   A0A1A9ZM35   A8VFE9   Q4JH21   Q4JH20   B4NHW0   A0A139WJB5   A0A3Q3JCW4   A0A3P8P3Z4   A0A0C9RUZ6   A0A146Y265   A0A3Q2EG28   A0A3Q1HEM7   A0A3Q3E5P3   A0A3B5Q191   A0A3P8P3X4   W5L0M4   A0A0R4IPK2   A0A2R7VZS4   E2AA67   A0A194Q454   A0A1J1I066   W5K0Z4   U6DMI5   A0A146Y203   A0A1A8DEJ2   A0A3Q3AED3   A0A3P8Z636   A0A336MNH4   A0A3Q3CUU7   A0A2P8YRJ5   E0VHY9   A0A3B3X137   A0A3B3U3N5   A0A3Q2PYP8   A0A0D6A9K8   A0A3Q1JI72   A0A0L8FQC6   A0A3B4ZHN0   A0A3B3Z6R5   A0A3P8SF80   A0A3B4GLE5   A0A3Q4GHY8   H2SX91   F6SK70   Q56H36   A0A437DA51   G3TZY7   A0A195BUZ2   G1T0K0   A0A3Q2ZWS1   G1LK37   A0A1S3MKE4   A0A060XJI3   A0A0B5LBD0   A0A132A0J8   F7C9R7   H0WX77   A0A3Q3EVL3   A0A3Q3EVN7   A0A2J8P412   A0A2J8WGD9   E9PKM0   A0A2J8P482   A0A2J8WGE3   A0A1W2PSA8   A0A384A134   A0A2Y9PAJ1   A0A0A9ZJM2  

PDB

6PAX     E-value=7.59323e-58,     Score=561

KEGG

105841803    K08031 paired box protein 6 | (RefSeq) paired box protein Pax-6-like

GO

GO:0006355   GO:0003677   GO:0007275   GO:0005634   GO:0043565   GO:0007420   GO:0016319   GO:0048036   GO:0045893   GO:0000981   GO:0001745   GO:0040018   GO:0042593   GO:0007455   GO:0007628   GO:0030182   GO:0008347   GO:0048749   GO:0008284   GO:0043567   GO:0000980   GO:0043704   GO:0006357   GO:0000977   GO:0048854   GO:0045944   GO:0030307   GO:0061303   GO:0009952   GO:0003311   GO:0021538   GO:0003309   GO:0030902   GO:0003310   GO:0090104   GO:0002089   GO:0045665   GO:0048596   GO:0030216   GO:0021798   GO:0007411   GO:0061072   GO:0042462   GO:0003682   GO:0021905   GO:0032808   GO:0009950   GO:0009786   GO:0002088   GO:0023019   GO:0001227   GO:0021913   GO:1904798   GO:0008134   GO:0009611   GO:0000979   GO:0001933   GO:0021796   GO:0048505   GO:0071837   GO:0007224   GO:0001568   GO:1990830   GO:0001709   GO:0003322   GO:0021986   GO:2000178   GO:0000790   GO:0031625   GO:0030334   GO:0048708   GO:0001228   GO:0000978   GO:0033365   GO:0021983   GO:0021912   GO:0006366   GO:0001764   GO:0021918   GO:0000132   GO:0050680   GO:0030858   GO:0005654   GO:0019901   GO:0021778   GO:0070410   GO:0005829   GO:0007435   GO:0060041   GO:0021902   GO:0035035   GO:0002052   GO:0070412   GO:0016020   GO:0003917   GO:0016887   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

Subcellular location

Nucleus  

Length:

150

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0005

Exp number, first 60 AAs:

0.00037

Total prob of N-in:

0.03472

outside

1  -  150

 

 

Pi

313.642934

Theta

183.715962

Tajima's D

2.024117

CLR

0.001452

CSRT

0.888555572221389

Interpretation

Uncertain