Silkworm Genome Informatics Database

Gene

KWMTBOMO08273

Pre Gene Modal

BGIBMGA009438

Annotation

hypothetical_protein_KGM_12369_[Danaus_plexippus]

Location

Bomo_Chr14(-):3271401-3300864 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.736

CDS

ATGTCATCTAAACGGAAGTCGCCACCGTCAAAATTGCAAGAAGGTGCCGCCGAGAACGCCAATACTGAAGCGGGACCCGCTACCCTGGATTTCGCAGACCACCCCGAGTCTTCGGACGAGCAACACAGCTACTACAAACTCTCCCCAAGCTGCTCAACAAGGAGCTCGATCAGCGAAGACGAACAGCCCAACGAAGACGAAAGACCAAGCAAAAAGCAACGTTTCGAATCATTAGAGATGACCAACAATCTATTAGTACCATCGTCTTTTCTAAGTCTGCACCAAATAAACGATCTGCAGGCTCGGAGACGTGGCTCCTCAGAATGCAGCAGTCCTGGTGCTGAGGCGAAGGTTTTGGGTCTTTGTAATAACAATAACTCATTGCTGAATCATAACAGTGCATTATCTTTGGCGCATCCTCATAAGAGGTCCATGGATGACGTGCTCAAGAGGTTGACCTCGAAAATGAACAACAGTACAATTAAAGAAGAAAAGCGGCCGACTCCGTCTACCACGCCAGTTAAGCAGAACAACGAGCGACGAGGAGTTCTAGACGCGGCGGCGATCCAAGCCCTTGCCGGAGAGAGTGTACTGGAGAAGGAGCGGCAGGTCTCCGAGCTGATACTGCAGCTGCAGATGGTTCGGGAGCAGCTGTTAGCTCAACAGGAACACGCCAAGATACTTTTCCTTGACAACCCAGGCGAGGCCGCGAGTAACGACTAG

Protein

MSSKRKSPPSKLQEGAAENANTEAGPATLDFADHPESSDEQHSYYKLSPSCSTRSSISEDEQPNEDERPSKKQRFESLEMTNNLLVPSSFLSLHQINDLQARRRGSSECSSPGAEAKVLGLCNNNNSLLNHNSALSLAHPHKRSMDDVLKRLTSKMNNSTIKEEKRPTPSTTPVKQNNERRGVLDAAAIQALAGESVLEKERQVSELILQLQMVREQLLAQQEHAKILFLDNPGEAASND

Uniprot

A0A212F364 A0A2A4JW02 A0A3S2LSP1 A0A194PYR2 A0A0N1IA28 A0A2H1V1I9 + More
A0A139WJH7 A0A139WJ72 A0A1Y1MHS0 U4UG40 N6TEQ8 A0A1B6IC56 A0A1B6MIB4 N6UUI0

Pubmed

22118469 26354079 18362917 19820115 28004739 23537049 + More

EMBL

AGBW02010618 OWR48171.1 NWSH01000464 PCG76217.1 RSAL01000016 RVE53024.1 + More
KQ459585 KPI98168.1 KQ460426 KPJ14786.1 ODYU01000224 SOQ34636.1 KQ971338 KYB27945.1 KYB27944.1 GEZM01036272 GEZM01036271 JAV82837.1 KB632308 ERL91997.1 APGK01031582 APGK01031583 APGK01033184 APGK01033185 KB740863 KB740817 ENN78552.1 ENN78859.1 GECU01023253 JAS84453.1 GEBQ01004277 JAT35700.1 APGK01012793 KB738825 ENN82467.1

Proteomes

UP000007151 UP000218220 UP000283053 UP000053268 UP000053240 UP000007266 + More
UP000030742 UP000019118

Pfam

PF00505 HMG_box

Interpro

IPR036910   HMG_box_dom_sf        + More
IPR027153   SOX-5/6
IPR009071   HMG_box_dom

SUPFAM

SSF47095 SSF47095

Gene 3D

1.10.30.10

ProteinModelPortal

A0A212F364 A0A2A4JW02 A0A3S2LSP1 A0A194PYR2 A0A0N1IA28 A0A2H1V1I9 + More
A0A139WJH7 A0A139WJ72 A0A1Y1MHS0 U4UG40 N6TEQ8 A0A1B6IC56 A0A1B6MIB4 N6UUI0

KEGG

101737761 no KO assigned | (RefSeq) transcription factor Sox-5

GO

GO:0003677 GO:0005634

PANTHER

PTHR45789:SF1

Length:

240

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00131

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06634

outside

1 - 240

Pi

241.549257

Theta

174.838373

Tajima's D

1.578484

CLR

0.171751

CSRT

0.806559672016399

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics