Gene

KWMTBOMO08268

Annotation

reverse_transcriptase?_partial_[Trilocha_sp._GAS-2011]

Location

Bomo_Chr14(+):3149685-3150761      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.367

CDS

ATGGCCCCCCCGGTCACGGAGCGTCTCCAGCCTAAGCAGCTGCGGGACATCGTCTCAGCGCTGTTCCCGCAAGAGCGGGAGGGATTTGTCGCTCCCGCTATGGACGCGCCGCCGGACTACGACGACGAAGCCCCTGCTGAGGTGCCTCATATAACGGGGGCGGAGCTCCGTGTGGCCGTGCGCGAAGGACACTGCACCCGGCCCAAACGGTGTCCATGGCCGGTTTGGGCCTTGGCTTTTGCTGCTCTAGGGGACCGACTCTTGAGACTTTACAACTCCTGCCTCGAGTCGGGACGGTTTCCTTCATCGTGGAGGACGGGCAGACTCGTGCTGTTGAGAAAGGAGGGGCGTCCGGCGGATACTGGCGCCGGGTACCATCCTATCGTGTTGCTGGATGAGGTGGGCAAGCTGCTGGAACACATTCTGGCAGCCCGCATCATCCAGCATATGGTCAGGGTGGGACCCGATCTGTCGCCGGAGCATTATGGCTTCCGAGAGAGCCGCTCAACGATAGACGCGATCCTTCGGGTGCGGGCCCTCTCGGAGGCCGTTTCCAGGGGTGGGGTGGCTTTGGCGGTGTCGCAAGCCCTGGCCCTCTAA

Protein

MAPPVTERLQPKQLRDIVSALFPQEREGFVAPAMDAPPDYDDEAPAEVPHITGAELRVAVREGHCTRPKRCPWPVWALAFAALGDRLLRLYNSCLESGRFPSSWRTGRLVLLRKEGRPADTGAGYHPIVLLDEVGKLLEHILAARIIQHMVRVGPDLSPEHYGFRESRSTIDAILRVRALSEAVSRGGVALAVSQALAL

Uniprot

Q868Q4   A0A2W1BMQ8   A0A0J7N1D9   A0A0J7K539   Q8MY29   A0A0J7JVM3   + More
A0A0J7K366   Q8MY35   Q8MY31   Q8MY27   O01419   Q8MY25   A0A212EYI2   Q8MY33   Q8MY37   A0A2W1C3J5   A0A0J7KL94   A0A0J7JZE0   A0A0J7KIQ4   A0A0J7JTS5   A0A0J7K4X9   A0A2S2PBP5   J9LC07   J9KNN8   X1WP11   J9KNS1   J9L0J0   A0A2S2N8I2   J9LQQ1   J9KT70   A0A0J7KLG0   A0A0J7KLH8   J9LA43   A0A0K8TR60   A0A0J7KWU5   A0A0J7NFZ0   A0A0J7N0R3  

Pubmed

12644555    28756777    9092665    22118469    26369729   

EMBL

AB090825    BAC57926.1    KZ149961    PZC76339.1    LBMM01012027    KMQ86470.1    + More
LBMM01014132    KMQ85306.1    AB078934    BAC06460.1    LBMM01027616    KMQ82174.1    LBMM01015565    KMQ84759.1    AB078929    BAC06452.1    AB078931    BAC06456.1    AB078935    BAC06462.1    D85594    BAA19776.1    AB078936    BAC06464.1    AGBW02011529    OWR46521.1    AB078930    BAC06454.1    AB078928    BAC06450.1    KZ149896    PZC78733.1    LBMM01006022    KMQ91006.1    LBMM01019371    KMQ83553.1    LBMM01006994    KMQ90132.1    LBMM01034011    KMQ81577.1    LBMM01013711    KMQ85513.1    GGMR01014195    MBY26814.1    ABLF02005539    ABLF02023257    ABLF02015223    ABLF02041308    ABLF02018808    ABLF02027248    GGMR01000779    MBY13398.1    ABLF02030663    ABLF02041312    ABLF02010223    LBMM01005736    KMQ91248.1    LBMM01005948    KMQ91066.1    ABLF02018098    GDAI01000741    JAI16862.1    LBMM01002480    KMQ94776.1    LBMM01005474    KMQ91485.1    LBMM01012412    KMQ86235.1   

Proteomes

UP000036403    UP000007151    UP000007819   

PRIDE

Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF00098   zf-CCHC
PF01553   Acyltransferase
PF00075   RNase_H

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.30.420.10    

ProteinModelPortal

Q868Q4   A0A2W1BMQ8   A0A0J7N1D9   A0A0J7K539   Q8MY29   A0A0J7JVM3   + More
A0A0J7K366   Q8MY35   Q8MY31   Q8MY27   O01419   Q8MY25   A0A212EYI2   Q8MY33   Q8MY37   A0A2W1C3J5   A0A0J7KL94   A0A0J7JZE0   A0A0J7KIQ4   A0A0J7JTS5   A0A0J7K4X9   A0A2S2PBP5   J9LC07   J9KNN8   X1WP11   J9KNS1   J9L0J0   A0A2S2N8I2   J9LQQ1   J9KT70   A0A0J7KLG0   A0A0J7KLH8   J9LA43   A0A0K8TR60   A0A0J7KWU5   A0A0J7NFZ0   A0A0J7N0R3  

KEGG

105842158    no KO assigned | (RefSeq) uncharacterized LOC105842158

GO

GO:0003964   GO:0008270   GO:0003676   GO:0016746   GO:0016021   GO:0004523   GO:0004519  

Length:

199

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01769

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05313

outside

1  -  199

 

 

Pi

150.268162

Theta

80.868391

Tajima's D

0.787389

CLR

0

CSRT

0.598770061496925

Interpretation

Uncertain