Silkworm Genome Informatics Database

Gene

KWMTBOMO08266

Pre Gene Modal

BGIBMGA009441

Annotation

PREDICTED:_hemicentin-2-like_[Bombyx_mori]

Location

Bomo_Chr14(-):3123647-3127074 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.355

CDS

ATGAATGATTTCTTCAATCTCTTCGATATATGTTTCGACTATAGTAACAAACGGCCGGTGTATTCGCATGTGATGATGTCAGAATTTCTTGCTCAAGATGAAAAAAGAATTGATCCTTGTGAAGGTTGTTACGCTATGGGTAAACTCGTGAACCCTACAGACGTTGTCGGCAGTGGACTTATTCAAGAGAGCTATACGTATAGCACAATCATTAATGCTGTCCTTATATGGCAACCGCCTCCTGAAACTGATAAGAACAAAAAGCGGATTAGTTTTCAAGATTTAGAGAAGGAAGTGCACCTTCTTACTAGAATGTTCGAAAAGATTGAAGTTTGGACAGGCACCTACAAGTATATTGAGATTGATGGACAAACAGTACCCAAGTATTTGTGGAAGGTGGTCGGCATACCTGAAAACGATGACATGAAAGTAGCTTATGTTTACGTCAATCATCCGAACGAGAGTGACGCGGACATTTGGTGTGACGGTACCTCTGCGGAAGAATGTAATGAATTATTGAACTTCAAATTAGATAAATACGCTTACTGCTGCGATATCCAGACGTTTTACAAGGAGACAAGATTCAGTTTCGAGTGA

Protein

MNDFFNLFDICFDYSNKRPVYSHVMMSEFLAQDEKRIDPCEGCYAMGKLVNPTDVVGSGLIQESYTYSTIINAVLIWQPPPETDKNKKRISFQDLEKEVHLLTRMFEKIEVWTGTYKYIEIDGQTVPKYLWKVVGIPENDDMKVAYVYVNHPNESDADIWCDGTSAEECNELLNFKLDKYAYCCDIQTFYKETRFSFE

Uniprot

H9JIU0 A0A2A4IXE1 C5I0W5 A0A2A4J8M3 A0A1E1WM33 A0S6W7 + More
A0S6W8 A0A2H1V2M3 A0A2H1WK87

Pubmed

19121390

EMBL

BABH01023204 BABH01023205 NWSH01005792 PCG63944.1 FJ622887 ACR78450.1 + More
NWSH01002649 PCG67762.1 GDQN01003046 JAT88008.1 DQ295915 ABC24706.1 DQ295916 ABC24707.1 ODYU01000391 SOQ35095.1 ODYU01009223 SOQ53491.1

Proteomes

UP000005204 UP000218220

PRIDE

H9JIU0

Pfam

PF07679   I-set        + More
PF01223   Endonuclease_NS
PF13519   VWA_2

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR003598   Ig_sub2
IPR013098   Ig_I-set
IPR013783   Ig-like_fold
IPR007110   Ig-like_dom
IPR003599   Ig_sub
IPR036465   vWFA_dom_sf
IPR001604   DNA/RNA_non-sp_Endonuclease
IPR002035   VWF_A
IPR040255   Non-specific_endonuclease

SUPFAM

SSF48726 SSF48726 + More
SSF53300 SSF53300

Gene 3D

2.60.40.10 3.40.50.410

ProteinModelPortal

H9JIU0 A0A2A4IXE1 C5I0W5 A0A2A4J8M3 A0A1E1WM33 A0S6W7 + More
A0S6W8 A0A2H1V2M3 A0A2H1WK87

KEGG

101742719 K17341 hemicentin | (RefSeq) hemicentin-2-like

GO

GO:0046872 GO:0016787 GO:0003676 GO:0003917 GO:0016887 GO:0005634 GO:0030145 GO:0006412 GO:0016876 GO:0043039

PANTHER

PTHR13966

Length:

198

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03459

Exp number, first 60 AAs:

0.00779

Total prob of N-in:

0.02101

outside

1 - 198

Pi

257.701219

Theta

209.2678

Tajima's D

0.688569

CLR

0

CSRT

0.577521123943803

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics