Silkworm Genome Informatics Database

Gene

KWMTBOMO08260

Pre Gene Modal

BGIBMGA002329

Annotation

PREDICTED:_uncharacterized_protein_LOC103310341_[Acyrthosiphon_pisum]

Location

Bomo_Chr14(-):2898857-2902028 View in EpiBrowser

Full name

ATP-dependent DNA helicase

Location in the cell

Extracellular Reliability : 1.296 Nuclear Reliability : 1.31

CDS

ATGCCTAGAGGACGACGGGCGAACATCGGCCGCCGCACAAGACATGCAAGCCAGCAACAAGTGTATTCACAGAACTTAAGCGAAGAAAGACAAAATATAATAAGAGAAAATGCCCGATTGAGACAACGCGTGAGCACACGAAGATCATTGGCATCATACAATCGCTTGGCATTCCAATATGATCCCACTGCGAACTACAGTGATGATGAAAATTTAGATATTGGACCAATGACGACTATATGCCGATATTGCAATGCGTTAAAGTTCAAAAGAGAAACGGCTGGATTGTGCTGCGCAAGTGGAAAAGTCAAACTAGATCCATTACTTACACCACCACAGCCACTGAAACTATTGTTCGATGGAACTGATCCCGATTCCAGCCATTTTCTTCAACACATCCTTGAATACAATAACTGCTTTCGCATGACTTCCTTTGGCGCTAATATCATTCGAGAAGGCGGCTTCATGCCGACTTGCAAGCAATTCGCTGTCGACATGTATGTCAAAGTCGAGACTGAACGTTTAGCGTTCATCCGATTCAATCAGGCAAAGCTACGATCTGAGGACTATATACACTTGCGTGATGCTATTCATTCAGATGGTGATGTTCAAAATATTGGACGTCTGACGATTCTCCCATCATCTTATATCGGAAGCCCACGCCACATGCACGAATACGCTCAAGACGCTATGACGTACGTGCGAAATTATGGAACTCCGGATTTATTTATTACGTTCACATGCAATCCGAAGTGGACGGAAATTGAACCTGAAATTCCTGATCCAGTCACTGATCTCCATCTACACGATATTGTGACAACACAGATGGTGCATGGACCGTGCGGTGCATTAAATCCATTATCGCCTTGCATGGCTGATGGAAAGTGCACAAAACGATATCCGCGACCGTTAGTTGCTGAAACAGTCACAGGGAACGATGGATATCCAGTTTATCGTCGGCGTTCAAAAGAAAATAATGGTCGAACTATCAAAGTTAAAGTTCAAAATCAAGAGATTGAGATCGGAAATGAATTCATTGTACCATATTGCCCGCTGCTATCAAGAATTTTCGAAACACATGCAAACGTTGAGAGTTGTCATTCGGCCAAATCAATCAAATATTTGTGCAAGTACGTCACAAAAGGCAGCGACATGGCTGTGTTTGGTATTGCGTCGGAAAATGCGAATGACGAAATCAGTAACTTCCAAATGGACAGATACGTCAGTACTAATGAAGCACTGTGGCGATTATTGTCATTTCAAATTCATGAAAGATATCCCACAGTTGTACATTTAGCAGTGCATTTGGAAAATGGCCAAAGAGCTTACTTCACTGAGGCTAATGCGGCACAACGAGCTGAAAGACCACCATCGACAACATTGACTAGCTTCTTTGCAATGTGTGAAGCAGATCCATTCGCAGCGACGCTGATGTACGTTGAAATGCCCAAGTATTACACTTGGAATCAATCAACAAAGAAATTCCAACGTCGCAAACAAGGAACCCCAGTTCCAGATTGGCCACAGGTGTTTTCCACTGATGCACTAGGTCGCATGTATACTGTTCATCCTAGAAATGATGAATGTTTTTATTTGCGACTGCTGTTGGTAAATGTACGTGGACCAAAATCATTTGCGCATTTGAAAACTGTGAATGGCCACCAATGCCAAACATATCGAGAAGCATGTCAACTATTGGGTTTGCTGGAGAACGATTCTCATTGGGATTTAACACTTGCGGATTCAGTTGTTTCATCAAATGCGTACCAAATACGAACGCTGTTCGCAATTATCATCACCATATGTTTTCCTTCACAACCAATTCAGTAA

Protein

MPRGRRANIGRRTRHASQQQVYSQNLSEERQNIIRENARLRQRVSTRRSLASYNRLAFQYDPTANYSDDENLDIGPMTTICRYCNALKFKRETAGLCCASGKVKLDPLLTPPQPLKLLFDGTDPDSSHFLQHILEYNNCFRMTSFGANIIREGGFMPTCKQFAVDMYVKVETERLAFIRFNQAKLRSEDYIHLRDAIHSDGDVQNIGRLTILPSSYIGSPRHMHEYAQDAMTYVRNYGTPDLFITFTCNPKWTEIEPEIPDPVTDLHLHDIVTTQMVHGPCGALNPLSPCMADGKCTKRYPRPLVAETVTGNDGYPVYRRRSKENNGRTIKVKVQNQEIEIGNEFIVPYCPLLSRIFETHANVESCHSAKSIKYLCKYVTKGSDMAVFGIASENANDEISNFQMDRYVSTNEALWRLLSFQIHERYPTVVHLAVHLENGQRAYFTEANAAQRAERPPSTTLTSFFAMCEADPFAATLMYVEMPKYYTWNQSTKKFQRRKQGTPVPDWPQVFSTDALGRMYTVHPRNDECFYLRLLLVNVRGPKSFAHLKTVNGHQCQTYREACQLLGLLENDSHWDLTLADSVVSSNAYQIRTLFAIIITICFPSQPIQ

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Cofactor

Mg(2+)

Similarity

Belongs to the helicase family.

Uniprot

X1WRV4 X1WU44 A0A0C2CBQ7 A0A0C2FTL0 A0A368GPV9 J9LB24 + More
A0A368FRT6 A0A0C2CCC7 A0A0J7K5F0 A0A182R3R8 A0A437AT28 J9LSB3 A0A267F6F6 A0A2N9HBD5 A0A2Z6R517 K3YD59 A0A0D3E4S6 W5LX14 A0A2G5CSU6 A0A3P6DPY9

EC Number

3.6.4.12

Pubmed

22580951 24916971

EMBL

ABLF02017703 ABLF02041883 ABLF02039418 ABLF02041882 KN740416 KIH53763.1 + More
KN761288 KIH48241.1 JOJR01000111 RCN45090.1 ABLF02018127 JOJR01000723 RCN34924.1 KN767628 KIH47497.1 LBMM01013912 KMQ85421.1 RSAL01000607 RVE41317.1 ABLF02024220 ABLF02041348 NIVC01001383 PAA68602.1 OIVN01003121 SPD08951.1 BEXD01002177 GBB97283.1 AGNK02004404 KZ305055 PIA34361.1 LR031875 VDD29540.1

Proteomes

UP000007819 UP000252519 UP000036403 UP000075900 UP000283053 UP000215902 + More
UP000247702 UP000032141 UP000018468 UP000230069

Pfam

PF14214   Helitron_like_N        + More
PF05970   PIF1
PF02689   Herpes_Helicase

Interpro

IPR010285   DNA_helicase_pif1-like        + More
IPR025476   Helitron_helicase-like
IPR027417   P-loop_NTPase
IPR012337   RNaseH-like_sf
IPR003840   DNA_helicase
IPR001356   Homeobox_dom

SUPFAM

SSF52540 SSF52540 + More
SSF53098 SSF53098

ProteinModelPortal

X1WRV4 X1WU44 A0A0C2CBQ7 A0A0C2FTL0 A0A368GPV9 J9LB24 + More
A0A368FRT6 A0A0C2CCC7 A0A0J7K5F0 A0A182R3R8 A0A437AT28 J9LSB3 A0A267F6F6 A0A2N9HBD5 A0A2Z6R517 K3YD59 A0A0D3E4S6 W5LX14 A0A2G5CSU6 A0A3P6DPY9

KEGG

101746650 no KO assigned | (RefSeq) uncharacterized LOC101746650

GO

GO:0006281 GO:0005524 GO:0000723 GO:0006310 GO:0003678 GO:0004386 GO:0003677 GO:0005634

Subcellular location

Nucleus

Length:

609

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11057

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00146

outside

1 - 609

Pi

83.263275

Theta

53.005254

Tajima's D

2.155888

CLR

0.177595

CSRT

0.905304734763262

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree