SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08238  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009454
Annotation
PREDICTED:_uncharacterized_protein_C9orf78_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.487
 

Sequence

CDS
ATGGCAGATTCAGATTCTCAAGAAAATCGACAAGTCGAAGAAATTAAATTGAAATCTAAGAAGCCTAGAAATCTTCGTACGCGTATCAAAGATGAAGACTCTGATGATGAGGAGCACATTTTGCAAAGACTTCAAGAAACAAAAGAAATTCAGAAACTTCGAGAAAGACCTAATGGGGTGAGCATCATAGCCCTGGCAACCGGCGAGAAAGTAACGTTGGAAGATGAAATGACTTGTAAAGATCCTTTTAAAGTTAAAACTGGCGGGATGATTAACATGCAAGCCCTTAAGAACGGGAAACTGAAGCAGGTGGATGATGCGTATGATACCGGAATAGGCACACAATTTTCAGCGGAAACGAACAAACGCGACGAAGATGAGGAGATGATGAAGTACATCGAAGAACAACTTGCAAAAAGAAAAGAGGGATGTGACAAAGACAATAAAGACCACAACCATACAGAAACACTAAAGTATTTGTCTCCCGAGGAAGCAGCCTTACTTTCCTTGCCAGACCATTTGAGAGTCTCTTCAAATCAGAGGTCAGAAGAAATGCTTTCTAATCAGATGCTCAGTGGTATACCAGAAGTAGATTTAGGCATTGACGCGAAAATAAAAAACATTGAGGCAACTGAAGAGGCCAAGATGAAATTAATATGGGAAAGACAAAACAAAAAAGATGGCCCATCTCAATTTGTTCCAACAAATATGGCCGTTAACTTCGTTCAGCATAACAGATTTAACATGGAGAATGATAAAAAACGAAAAATTGAAAAAGTTGTAGTGCCCAAAACAGAAATTAGCGTGATTGATGAGAACGTTGATAAAATAGTTAAGAAAGCTAAAGGGGAAAGAGCAACTGATGATTATCATTATGAGAAGTTTAAAAAACAGTTTAGAAGGTGTTAA
Protein
MADSDSQENRQVEEIKLKSKKPRNLRTRIKDEDSDDEEHILQRLQETKEIQKLRERPNGVSIIALATGEKVTLEDEMTCKDPFKVKTGGMINMQALKNGKLKQVDDAYDTGIGTQFSAETNKRDEDEEMMKYIEEQLAKRKEGCDKDNKDHNHTETLKYLSPEEAALLSLPDHLRVSSNQRSEEMLSNQMLSGIPEVDLGIDAKIKNIEATEEAKMKLIWERQNKKDGPSQFVPTNMAVNFVQHNRFNMENDKKRKIEKVVVPKTEISVIDENVDKIVKKAKGERATDDYHYEKFKKQFRRC

Summary

EMBL
BABH01023137    RSAL01000196    RVE44547.1    KQ458751    KPJ05322.1    NWSH01000813    + More
PCG74086.1    KQ459986    KPJ18854.1    KZ149927    PZC77524.1    DQ985600    ABJ97189.1    GDQN01009679    JAT81375.1    GAIX01007037    JAA85523.1    GDQN01005673    JAT85381.1    GECZ01028267    JAS41502.1    PYGN01000349    PSN47991.1    GECU01017772    JAS89934.1    AGBW02012961    OWR44156.1    NEVH01020938    PNF20569.1    GFDL01011900    JAV23145.1    GAKP01022683    JAC36269.1    GEBQ01010480    JAT29497.1    GFDF01005218    JAV08866.1    KQ971318    EFA00334.1    GGMS01007332    MBY76535.1    APGK01043942    BT127771    KB741019    AEE62733.1    ENN75146.1    KK853058    KDR11927.1    GANO01000829    JAB59042.1    KB632338    ERL92923.1    CH477712    EAT36987.1    DS231873    EDS41580.1    GBXI01012749    JAD01543.1    CH963847    EDW72642.1    GAMC01004021    JAC02535.1    CH902618    EDV38788.1    CH933816    EDW17244.1    JXUM01094229    KQ564113    KXJ72765.1    KQ414699    KOC63432.1    CH940647    EDW68722.1    CM000159    EDW92881.1    GDKW01000292    JAI56303.1    ACPB03000182    GAHY01001990    JAA75520.1    GBGD01002325    JAC86564.1    KRG07688.1    GFXV01005790    MBW17595.1    JRES01001077    KNC25721.1    CH916366    EDV95904.1    CH954178    EDV50205.1    GFTR01004755    JAW11671.1    CM002912    KMY96918.1    CH480817    EDW50093.1    GGFM01004997    MBW25748.1    GGFM01007733    MBW28484.1    AE014296    AY069253    AAF47544.1    AAL39398.1    ABLF02029284    AK342359    BAH72414.1    CH923264    EDW04423.1    GGFJ01007794    MBW56935.1    GGFJ01007793    MBW56934.1    AXCN02000877    JXJN01018858    GGFK01012038    MBW45359.1    GBBI01001085    JAC17627.1    GBYB01014598    JAG84365.1    GDHC01016459    JAQ02170.1    GBHO01002639    GBRD01012420    GDHC01018202    JAG40965.1    JAG53404.1    JAQ00427.1    GL732526    EFX87982.1    GECL01001620    JAP04504.1    KK107260    QOIP01000001    EZA54252.1    RLU26244.1    ADMH02002104    ETN59055.1    LJIG01002567    KRT84373.1    OUUW01000002    SPP76961.1    LJIJ01000234    ODN00093.1    KZ288212    PBC32834.1    ATLV01023588    KE525344    KFB49348.1    CH379069    EAL29462.1    CH479206    EDW30897.1    AAAB01008960    EAA11347.2    CCAG010001198    UFQT01000253    SSX22426.1    ADTU01012403    GDHF01029720    JAI22594.1    GL888828    EGI57732.1    KQ981560    KYN39847.1    GDIQ01054527    LRGB01001564    JAN40210.1    KZS11799.1   
Pfam
PF07052   Hep_59
Interpro
IPR010756   Tls1       

Ontologies

Topology

Length:
302
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00086
Exp number, first 60 AAs:
4e-05
Total prob of N-in:
0.16880
outside
1  -  302
 
 

Population Genetic Test Statistics

Pi
177.938475
Theta
133.746795
Tajima's D
-0.700017
CLR
1048.945305
CSRT
0.198090095495225
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
27530593 KEIINLNAITTKDSDSEHDSDDDIKC 100.00 1e-04
27530593 KIHTPGALQADSDDSDFENDNYKL 100.00 1e-04
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