SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08233
Annotation
PREDICTED:_piggyBac_transposable_element-derived_protein_3-like?_partial_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 1.925
 

Sequence

CDS
ATGAAACCTCCATATTCTAATTTGCTGAAAGAAGCTGGCCCTGGCCAGTATTATGATCTATTGGTGCCTGAAGAAATTCTTGAAATGATTGCTGAGCAGACAAATTTGTTCGCAAGTCAAAACATCACAGCCAGGCAAACAAAGCCTGGATCAAGGTCTCATTCATGGAAGCCAACAAACAAGACAGAAATAAAACAGTTTCTTGGGCTGGTCTTGTTTATGGGCGTAGTAAAGCTGCCGAAATTAGCTTATTATTGGAGCAAAGACAAGATACTTGGACAAACTTTTCCAGCCACCGTTATGAGTAGGAACCGCTTCGAGTTACTACTGCAATACCTACACTTTAGCGACAATTTATCTGTCGACAGAAACGATCGTATTGCCAAAATAAGACCTTTAATCGATGTTCTCAATGCTACTTTCCAGAAATATTATTCGCCTAAAGAAGATGTTTGTGTGGATGAAAACCAAGTACCTTTCAGAGGTCGAATAATATTCAGGCAATACAATAAAAGTAAGCCACACAAGTTTGGCATGAAGCTATTTAAGTTATGTACTGTTCCCGGATATACTTGCAAACTTAATTTGTATAGTGGGAAAAACATTGACGCAATAAATACTACGCCAACAAATGTGGTGATGGCACTATGTGAAAATATATTTGACAAAGGACTCACGCTAGCAACTGATAATTGGTACACTAGCTTGCAACTGGCTTATCGGTTATTGGAGAAGCAAACCCATTTAATTGGCACATTGCGAAAAAACAGAAGAGGATTGCCTAAGGCTGTTGTTGATTCGAAACTGCAAAAAGGTGAAACAATGGCTATGGAGAATGAAGATGGAGTAACAGTGCTTAAATGGAAAGATAAGAGGGACGTGCTTATGCTGTCGACAAAGCATTCCGACAAAATTGCTGTGGTGGTGAAAAAAGGCAAACAGATTCGTAAACCAAAAGTTATGTTGGATTATAATAAATCGAAAGGGAGGGCTCTCATAAATTATTTGACTCGGCCAGCAGATTCCCAAGAAATAATTATCAATGAAAGACCTAAAAGACTCAAGCATGTTCTAAAATTAAAGGAAGGAAAAGTAAGAGACACGCGTCGTTTTTGCGTGCAATGTTATAAAGATTCAGTACAGGAATTTGGTCGTAAAGTAGCTAAGAATAAAGCTAAGAAAGTGAATATCGATATAGATATGGAGCGTGACTTCATAGAGCCTGGCGAAGGCAGTGAAGTAGATGAAGGTGATTCGGCGAATATGGTCGGTATGATCGATATTTCTTTGAAACCAAGACAAATCGATGATTTTCCGATGGACTTAGACAGTATTGCTGAACATGAGGTAGTTCAGGCGATACAGGAGCTGGACAATGCTGCCGACGAAGTCCTTCGGAACGTGGTGGGACCGGAAATCGATCTGCTTCATTTTGACTGGCGAGGCGAGCCGGAAATTTTTGAGTCTGTCTGGGAAGTATTTGCTGTCTACTGGACCAACGTTTGA
Protein
MKPPYSNLLKEAGPGQYYDLLVPEEILEMIAEQTNLFASQNITARQTKPGSRSHSWKPTNKTEIKQFLGLVLFMGVVKLPKLAYYWSKDKILGQTFPATVMSRNRFELLLQYLHFSDNLSVDRNDRIAKIRPLIDVLNATFQKYYSPKEDVCVDENQVPFRGRIIFRQYNKSKPHKFGMKLFKLCTVPGYTCKLNLYSGKNIDAINTTPTNVVMALCENIFDKGLTLATDNWYTSLQLAYRLLEKQTHLIGTLRKNRRGLPKAVVDSKLQKGETMAMENEDGVTVLKWKDKRDVLMLSTKHSDKIAVVVKKGKQIRKPKVMLDYNKSKGRALINYLTRPADSQEIIINERPKRLKHVLKLKEGKVRDTRRFCVQCYKDSVQEFGRKVAKNKAKKVNIDIDMERDFIEPGEGSEVDEGDSANMVGMIDISLKPRQIDDFPMDLDSIAEHEVVQAIQELDNAADEVLRNVVGPEIDLLHFDWRGEPEIFESVWEVFAVYWTNV

Summary

Pfam
PF13843   DDE_Tnp_1_7        + More
PF13842   Tnp_zf-ribbon_2
Interpro
IPR029526   PGBD        + More
IPR032718   PGBD4_C_Znf-ribbon       

Ontologies

Topology

Length:
501
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.05639
Exp number, first 60 AAs:
0.00087
Total prob of N-in:
0.15129
outside
1  -  501
 
 

Population Genetic Test Statistics

Pi
340.712691
Theta
167.478915
Tajima's D
3.108184
CLR
0.453918
CSRT
0.983200839958002
Interpretation
Uncertain
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