SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08225
Pre Gene Modal
BGIBMGA009503
Annotation
PREDICTED:_uncharacterized_protein_LOC101740576_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 3.819
 

Sequence

CDS
ATGATAGTGAAACTGAAAGAGGACCGGACGATCCTCCTCACGACGCATCATCTCGACGAAGCGGAGTTGCTAAGCGACCAAATCGTCATCATGCATAAGGGCCAAGTCCACACAACAGGCTCTCCGGTGGAGATAAAACGCACCCTGGGCAACGGGTACAAGCTAACCGTGGTCTTCCCCGAGACGACCTGCGAAGATCGCCCTGAAGACCTGGATGAGAAGACCAAACAACTGCTCTCTACCGTCAGGGACGACGTCAAGAACGCCAACATCGTCGATGTTAACGACACTGATGTGGAGATTCTACTGCCTTTCTATGACGCTGACGGACTTAGCAATGACCTACATCGCCTATGCTTGAACTTGGAGTCCCAGCAGCCAGTCCTCGGCTATAAGACCTACGCCATGGACTGCAGCAGTCTCGAGCAGGTGTTCTGTGACATCTGCACTCAAGCCGACCTAGGAGCATCTCAGACTGACGAGTCGAAATACGTATCCATAGAGTCGCCGTCTGAAGCGTCCGCCAGCACGAGGTCCCGTGGGGGGCGGGCGGGGGGCGCGGTGCGGGGGGCGGTGCGCGGGGAGGGCGCCCTGCGAGCCTCGTGCCGGGAGATGTTCGCGGCCCTCATGTACGCGCGGTACTTGCATCACGTCCGAAATAGATGGTTAATGTTCATGTTACTACTCCTGCCGTCGGTTTTCGTAACAGTAGCTATGGGATTCTCGTCTTTAAGACCGCCGGCTGTCAAAGAAATAGCTCTAAAATTAAATGCAGACCTGTACGAAGGATCTACGCAGTATATTGTGCTGCAGCCGTCTACGTATGAGAACAACGACGAAAAGTACGTAGGGTTCGGCGTTGACGTCCTCCAGAACATAGCTGGCGGTAACAACGTGACCACGTGGACTAGTAAGGACAATCCTTCGTGCACGTGCAACATAACGCGGCAGATCTGCGACGGAGACCCGGCTGCGGTCAGCACGCTGGCCATGATGGCGCTACCTGATGTGGATACACTCAACGAATGGCTGCTGACTTCACACGAAATATACATTGAGAAGAGATACGGCGGCTTCTCGTCGACAGTCAGAGACAACAAGACAAACTTCATAACGTGGTACAACAACAAGGGTCATCATGCGCTACCGTCATATCTCAACGTCATGAACAACGCCATCTATCGGACGGTGAGCGGTAACCGTCGTGCAAACATCACAGTATACACACATCCGTTGAAGATATCCAGTGAAAAGATCAACAAAGCCACTTTGTATCAGCACATAGCAGACGCTGGCATATCGAGCCTGGTGCTGGTGGCGTACGGGCTGGTGAGCGCGGGCGCGGGCGTGTGGCTGGTGGCGGCGCGCACCTCGCAGCAGAAGCGGCTCCAGCTACTCTGCGGAGTCAGCCCACTAATGTACTGGACCGCTGCACTCACTTGGGATGTCATTATCATCTTCATAAATATGATAATAACGGCGATGGTAATGTTGGCGTTCGGCTTCCCCGTGTTCGTGGCGAAAAACAACTTGCCGGCGATATGCGTACTCATTATGTTATATGGATTTGCGTGCGGTAACCTCGTCCATCTGTTGGAGAAGCTGTTTACGGAAGCTAGCCTAGCCAACATGGTGTTGTTCTGCGCGAATTCCTTGCTGGGGCTCGCCGGGATGACAATACTTCTCATACTCGACATCATATCGGATTCCGACGCAACAGACAACGCTCGGTGGATCTTACACAAGATATTCTTGATAGCTCCACAGTTCGCGCTGGGTGACGGATTACTGGAAATAGCCAAGAACACTATTCAGTCGGAGGTGTTAAGCCGTTTCGGTATGGACACGTATCAAGATCCGTTCAGGTCCAGTTTGCTAAGACTCCACGTGTTGGCGCTGGTAGTGGTAGGCGGAGCCCTCTTCCTACTCAACCTGGCCATCGAGTACGATTGCTTCGAAATATTTCTTGGCAGGTTGAGACGCGAGAAGATGCCGCAGACGAACTACGAAGAATTGGAGCCCGTGGAAGTCGCTGAGGAGAGGAAGAAGGTGCGAGCGGCACTGTTGCACTCCGCTCAGGGACACATCCGGGTCAACACCATCGGCAATATTAATAGGGGCTACGTACATACGGAGTGCGACGGCAAGCGAGTGCGGCGGGCGGCGCGTGGCGGCGGCGCCGGCGTGGCGCAATGTGTGCGGCTCGGCAAGATGTACCGCCGCCCCGCGCTCGTGGACCTCACGCTCTCGCTGCCTGAGGGACAGTGCACAGCGTTACTCGGAGAGAACGGCGCTGGTAAATCCACGACCTTCTCGATACTGACCGGGGAGATCCGACCTACTGCCGGTGAAGTGTACCTCAATGAACAGAAGATGACCCCTAGGAAACTCTGTCAAGGACTTATAAGTTACTGTCCACAAAGCGACGCTATAGACCCCCTGCTGACGGTCAGAGAGATCCTGTCCTTCTACTGCCAGTTAAGAGGAATAACTGACCAGGACGATGTGATAAAAAGAACATTAGCGATGTTTGAATTGAATTCATACAGTGACGTGCTGAGTGGAAATCTTAGTGGCGGAAACAAAAGGAAGTTGTGCACCGCTATTGCGTTCATGGGAAGAAATCCGCTTGTCCTACTCGATGAGCCGACCAGCGGTATGGACGCGTCGTCGGGCGCGGCGGTGTGCGAGCGGGCGCGCGAGTGCGCGGGCGAGGGCCGCGCCGTGCTCGTGGCCACACACGCGCTGCGGGACGCGCGACGTCTGGCCGCGCGCATCGCACTCCTGCGGAAGGGACGCCTCGTGGCTCTAGCGCCGCTACACGACTGCCTACAGAGGTTCGGCGGCGGGCACGTGGTGGAGTGCCGCGCGCCGGGAGCGGCGGGGGTCGCGTGGGGGACCGTGCGTGCTCGCGCCCCCTACGCCGTGCTGCGCGTGCTGCACGCACACACGCTGCAGTTCCTGCTACCCAACTACGTTACAGTTAACGAGAAGGAGACACCGATACGACTCAGCGATATATTCCGTTTGATGAACGAACTGCAGACTGCCGGTGAAATTGAGGACTACACAGTGAACCAGAGCTCGCTGGAACAGATGTTCCTAAGCTTCACGGACCAGAGGGATGTAGAAACGGGTCCCATCGAGATGGAACCTTTGCCAACGCCCGAATTTGTCAAGAGTGAAGAAGAATATGACAGCATCACCTGTCTGTAA
Protein
MIVKLKEDRTILLTTHHLDEAELLSDQIVIMHKGQVHTTGSPVEIKRTLGNGYKLTVVFPETTCEDRPEDLDEKTKQLLSTVRDDVKNANIVDVNDTDVEILLPFYDADGLSNDLHRLCLNLESQQPVLGYKTYAMDCSSLEQVFCDICTQADLGASQTDESKYVSIESPSEASASTRSRGGRAGGAVRGAVRGEGALRASCREMFAALMYARYLHHVRNRWLMFMLLLLPSVFVTVAMGFSSLRPPAVKEIALKLNADLYEGSTQYIVLQPSTYENNDEKYVGFGVDVLQNIAGGNNVTTWTSKDNPSCTCNITRQICDGDPAAVSTLAMMALPDVDTLNEWLLTSHEIYIEKRYGGFSSTVRDNKTNFITWYNNKGHHALPSYLNVMNNAIYRTVSGNRRANITVYTHPLKISSEKINKATLYQHIADAGISSLVLVAYGLVSAGAGVWLVAARTSQQKRLQLLCGVSPLMYWTAALTWDVIIIFINMIITAMVMLAFGFPVFVAKNNLPAICVLIMLYGFACGNLVHLLEKLFTEASLANMVLFCANSLLGLAGMTILLILDIISDSDATDNARWILHKIFLIAPQFALGDGLLEIAKNTIQSEVLSRFGMDTYQDPFRSSLLRLHVLALVVVGGALFLLNLAIEYDCFEIFLGRLRREKMPQTNYEELEPVEVAEERKKVRAALLHSAQGHIRVNTIGNINRGYVHTECDGKRVRRAARGGGAGVAQCVRLGKMYRRPALVDLTLSLPEGQCTALLGENGAGKSTTFSILTGEIRPTAGEVYLNEQKMTPRKLCQGLISYCPQSDAIDPLLTVREILSFYCQLRGITDQDDVIKRTLAMFELNSYSDVLSGNLSGGNKRKLCTAIAFMGRNPLVLLDEPTSGMDASSGAAVCERARECAGEGRAVLVATHALRDARRLAARIALLRKGRLVALAPLHDCLQRFGGGHVVECRAPGAAGVAWGTVRARAPYAVLRVLHAHTLQFLLPNYVTVNEKETPIRLSDIFRLMNELQTAGEIEDYTVNQSSLEQMFLSFTDQRDVETGPIEMEPLPTPEFVKSEEEYDSITCL

Summary

Pfam
PF00005   ABC_tran        + More
PF02017   CIDE-N
PF00051   Kringle
PF00400   WD40
Interpro
IPR003593   AAA+_ATPase        + More
IPR026082   ABCA       
IPR003439   ABC_transporter-like       
IPR027417   P-loop_NTPase       
IPR017871   ABC_transporter_CS       
IPR020846   MFS_dom       
IPR003508   CIDE-N_dom       
IPR018056   Kringle_CS       
IPR013806   Kringle-like       
IPR000001   Kringle       
IPR038178   Kringle_sf       
IPR030369   ABCA7       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR000515   MetI-like       
SUPFAM
SSF52540   SSF52540        + More
SSF57440   SSF57440       
SSF50978   SSF50978       
Gene 3D
PDB
5XJY     E-value=1.90768e-42,     Score=438

Ontologies

Topology

Length:
1071
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
149.141250000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.76659
outside
1  -  221
TMhelix
222  -  244
inside
245  -  432
TMhelix
433  -  455
outside
456  -  482
TMhelix
483  -  505
inside
506  -  509
TMhelix
510  -  532
outside
533  -  541
TMhelix
542  -  564
inside
565  -  624
TMhelix
625  -  647
outside
648  -  1071
 
 

Population Genetic Test Statistics

Pi
258.042721
Theta
188.577114
Tajima's D
1.552666
CLR
0.190741
CSRT
0.793060346982651
Interpretation
Uncertain
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