Silkworm Genome Informatics Database

Gene

KWMTBOMO08219

Pre Gene Modal

BGIBMGA009500

Annotation

PREDICTED:_NEDD8_ultimate_buster_1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr14(+):2122137-2126501 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.698

CDS

ATGTGTTGTCGCAGAGAGGAGCGGGCCCTGGGTCGGTGCGCGGACGGCAGCCCGGTGAGCGCGGCGCTGCTGGCGGGGCTGCTGGACATGGGCTGCGCGCGCCGCCTTGCCCTGCTAGCTCTCAAGAACTCCAACAACAACGTGGCTGAAGCCCTGTACCTCATGCAGGAGAGGAGGGAACTGCTTCAAGACAGTGACGCGTCTTCCAGCGACCCGGAGACCCCGAGCTCCGACGACTCCACGCTGGAGCCCGACAACAAGCTCGCGGCGGAGCTGGAGGCGATGGGCTACGATCTGGACGACGCCAGGATCGCCCTGAAGCTGTCGCGGAACCAGCTGGGCGGGGCGCTGGACATCCTACTCGGGGGACAGCTGCGCGATGTCGGCGACCCGTCCACCAGCTCGGCGGCGGCCAGCAAGAAGAGACTCCGGAAACTGAAGCGAGAGAAGAGGGAGAAGCGCCGACAAGAGCGCGACTCGGCTCTGAAGCGTCTCAAGACGTCGGTGAAGACGGAAGACGACGACTACCTGGACACCAGCCTGGTGGATGAAGAGGAATTCCTCGCTAAATACAAATCCTTGCTCTAA

Protein

MCCRREERALGRCADGSPVSAALLAGLLDMGCARRLALLALKNSNNNVAEALYLMQERRELLQDSDASSSDPETPSSDDSTLEPDNKLAAELEAMGYDLDDARIALKLSRNQLGGALDILLGGQLRDVGDPSTSSAAASKKRLRKLKREKREKRRQERDSALKRLKTSVKTEDDDYLDTSLVDEEEFLAKYKSLL

Uniprot

H9JIZ9 A0A2A4JNJ2 A0A2W1BPW9 A0A437AZL1 A0A1E1W3D2 A0A212FGU8 + More
A0A1B6E9U0 A0A1B6DXQ1 D2A289 A0A3Q0J1H7 A0A2J7RT79

Pubmed

19121390 28756777 22118469 18362917 19820115

EMBL

BABH01023089 NWSH01000919 PCG73541.1 KZ150088 PZC73733.1 RSAL01000247 + More
RVE43543.1 GDQN01009568 GDQN01009226 GDQN01007003 GDQN01003057 JAT81486.1 JAT81828.1 JAT84051.1 JAT87997.1 AGBW02008595 OWR52957.1 GEDC01002596 JAS34702.1 GEDC01006842 JAS30456.1 KQ971338 EFA02056.1 NEVH01000006 PNF44036.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000007266 UP000079169 + More
UP000235965

PRIDE

H9JIZ9

Pfam

PF18037 Ubiquitin_5 + More
PF00627 UBA

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR015940   UBA
IPR029071   Ubiquitin-like_domsf
IPR009060   UBA-like_sf
IPR041207   NUB1_ubiquitin-like_dom
IPR039749   NUB1
IPR000626   Ubiquitin_dom

SUPFAM

SSF46934   SSF46934        + More
SSF48452   SSF48452
SSF54236   SSF54236

ProteinModelPortal

H9JIZ9 A0A2A4JNJ2 A0A2W1BPW9 A0A437AZL1 A0A1E1W3D2 A0A212FGU8 + More
A0A1B6E9U0 A0A1B6DXQ1 D2A289 A0A3Q0J1H7 A0A2J7RT79

KEGG

101735308 no KO assigned | (RefSeq) NEDD8 ultimate buster 1

GO

GO:0005515 GO:0007186 GO:0016021 GO:0016491 GO:0016705 GO:0005634 GO:0030145 GO:0006412 GO:0016876 GO:0043039

PANTHER

PTHR12948

Length:

195

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29752

Exp number, first 60 AAs:

0.29721

Total prob of N-in:

0.32088

outside

1 - 195

Pi

188.320851

Theta

121.287885

Tajima's D

1.737419

CLR

0.069645

CSRT

0.834008299585021

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics