SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08213  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009463
Annotation
Host_cell_factor_1_[Papilio_xuthus]
Location
Bomo_Chr14(-):1936851-1939616      View in EpiBrowser
Location in the cell
Mitochondrial   Reliability : 1.078
 

Sequence

CDS
ATGAAGGAAAACGCGGTACTTAAGTGGCAAAAAGTGTACAATCCTACCGGCCCTCAACCGCGACCCCGCCATGGCCATCGCGCGGTCGCCATAAAAGATTTGATGATAGTTTTCGGCGGCGGAAACGAAGGAATCGTTCACGAACTGCATGTCTTCAATACCACCACTAATCAGTGGTTCGTACCAGTCACAAAAGGAGAAGTCCCACCAGGATGCGCTGCCTACGGCTTCGTGGTAGACGGTACGCGCCTGTTAGTTTTTGGCGGCATGGTAGAGTACGGCAAGTATTCAAATGATTTGTACGAATTACAAGCCTCTAGGTGGGAATGGAAACGTTTAAAACCACTGCCACCAAAGCAGGGTCTTCCACCTTGTCCACGACTCGGTCACAGCTTTACGCTTCTCAATGGGAAAGTATACCTGTTTGGCGGACTGGCCAATGAAAGCGACGATCCAAAAAATAACATACCGAGATATCTTAATGATCTATACATTTTAGGACTTTATCCTAATTCATCTATGACTGTTTGGGATATACCTTTGACCTACGGTCAGTCTCCACCTCCCCGAGAGTCTCACAGTGGGGTAGCATATACTGACAAAAACACAGGCAAATCATCTTTAATTATCTATGGAGGCATGAGTGGATCTCGCCTTGGTGATTTGTGGATACTTGATGTTGACACAATGTCATGGTCTCGACCGGAAGTTGGAGGACCTCCACCTCTTCCTAGATCACTTCATACAGCTACAGTTATCGGCCACCACATGTATGTCTATGGTGGCTGGGTACCGCTGGTCCCTGATGAATCTAAACTTGCTACACATGAGAAAGAATGGAAGTGCACAAACACCCTTGCCTCATTGAACCTAGAAACAATGACTTGGGACAATATAGCACTGGACAAATTTGAGGAATGCGTTCCTCGGGCTCGAGCTGGACACAGTGCTGTTGCTATTCAAACTAGACTGTACATATGGTCTGGAAGGGATGGATATAGGAAAACTTGGAACAACCAAATCTGTTGCAAAGACCTTTGGTATCTTGAAGTAGGAGTACCACCACAAGCGGGACGTGTAGCCCTTGTACGTGCTGGCACCACATCATTGGAACTATGCTGGCCTGCTCTCAACACAGTTACCACTTATTTATTGCAAGTACAGAAATGTGGCAAAGTGACACCTACACGTTTCCCGGCTGCCTCTGAACCTGTGGTTGCACCTCCTCCTGCATCTCCTGCTGCCACACAGACTGATGCTGCTAAAGCTTTTGGTCTATCTTCTCCAGTTTCTTCATCGATCCCCATCACACCATCTGATACAAATGCTCGTGTAGTAGTTACAGTAGCTTCACCTATAGTGACACCAATCATCACGACTCCTCAAAAAGTAACACCTGGAACACTCAAACTGTCTGCTCAAGCTGCCACCGTAAAAGTCACGCCGGGCACTCCAACTACGAAACAGTCATTCCAGGCGAAAGCAATAGTCAAATCTCCCGCTAATCCTGCGACGCCTAGCTCCTCTCAACAGATCAAAGTGGCCGCGGTGACGCCGCAAGGTGTGACAAGAATCGTAAGTGGCGTCTCGACACCAGGAACCGTACGTGTCTCTACAGCACAGTCTGGTGCACAGATTGTGTTAGGATCGGCCTCTGGAGGCGCCGGTACGCCGCGTTACGTACAAGTGAAAACAGGCGGGAGTGGTGCTGTTCCTGTGAAGTTGAGTGCTGGTAATATGCCTGTCAAACTTGCAGGTAATGCAGTCCCACTAAAGATTGGTACTACTAACATTCAAGGAAAATTGACTCCCAACAGTGTGCAGAAAGTAGGACAAGTCACTGCTGGAAATCTACCCTTGAAACTTGGTGCCGGTAATGTCAAGATTGGTACGAGTAATGTTCTTGTAAAAACAGCAGGCGGAATGCCCTTACAGGGTGGTGTTGCAAACCTACAAACAAAAGTCGCCACCGGGGTTCCTGTGAAACTAGGCGCCGGTAACATTCCTGTGATAGCCAGCTCAGGGGGCACGATTCAAATAGCAGGTGGAACGCTGGCTGGCCAACAAGTAAAAACACCTGTATATAAGATATTGACAGCAAAATCAGGTGATCAAACAGCAACAGTGGCTACATCAACAGCAACTGGTGCGACAGTACTGAGGCAAGCAGCTGGCAATGCTGGTATTCCCGTCATCATAAAGAAAACAGGTGCAGGTGCGCAAGCAAGTAATACACCGCAATTTGTTACCCTTGTGAAGACCTCAACGGGCATGACTGTAGCAACTATGCCAAAAGTAGCAATGATGAACAGGTCTGGAGCAGCCGTTTCTCAAGCACAAAACATCACTCCGGGGGCCACTATTGTAAAGTTAGTATCTAACACTGTTGGTGGTAACAAAATTATCACTTTACCATCTAATATGTTGCAACTAGGTAAGGCTGGTGTTGGTGGAAAACAGACCATAGTAATCACCAAATCAGCTAGCCAAGCAGCACAGTCAAATCAACAACAGTGA
Protein
MKENAVLKWQKVYNPTGPQPRPRHGHRAVAIKDLMIVFGGGNEGIVHELHVFNTTTNQWFVPVTKGEVPPGCAAYGFVVDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKPLPPKQGLPPCPRLGHSFTLLNGKVYLFGGLANESDDPKNNIPRYLNDLYILGLYPNSSMTVWDIPLTYGQSPPPRESHSGVAYTDKNTGKSSLIIYGGMSGSRLGDLWILDVDTMSWSRPEVGGPPPLPRSLHTATVIGHHMYVYGGWVPLVPDESKLATHEKEWKCTNTLASLNLETMTWDNIALDKFEECVPRARAGHSAVAIQTRLYIWSGRDGYRKTWNNQICCKDLWYLEVGVPPQAGRVALVRAGTTSLELCWPALNTVTTYLLQVQKCGKVTPTRFPAASEPVVAPPPASPAATQTDAAKAFGLSSPVSSSIPITPSDTNARVVVTVASPIVTPIITTPQKVTPGTLKLSAQAATVKVTPGTPTTKQSFQAKAIVKSPANPATPSSSQQIKVAAVTPQGVTRIVSGVSTPGTVRVSTAQSGAQIVLGSASGGAGTPRYVQVKTGGSGAVPVKLSAGNMPVKLAGNAVPLKIGTTNIQGKLTPNSVQKVGQVTAGNLPLKLGAGNVKIGTSNVLVKTAGGMPLQGGVANLQTKVATGVPVKLGAGNIPVIASSGGTIQIAGGTLAGQQVKTPVYKILTAKSGDQTATVATSTATGATVLRQAAGNAGIPVIIKKTGAGAQASNTPQFVTLVKTSTGMTVATMPKVAMMNRSGAAVSQAQNITPGATIVKLVSNTVGGNKIITLPSNMLQLGKAGVGGKQTIVITKSASQAAQSNQQQ

Summary

Uniprot
H9JIW2   A0A2W1BFV1   A0A2H1WX93   A0A194PZ56   A0A0N1PHE6   A0A212FP30   + More
A0A0L7LIA0  
Pubmed
19121390    28756777    26354079    22118469    26227816   
EMBL
BABH01023071    KZ150093    PZC73668.1    ODYU01011346    SOQ57034.1    KQ459585    + More
KPI98323.1    KQ460889    KPJ11086.1    AGBW02003881    OWR55501.1    JTDY01001000    KOB75152.1   
Proteomes
UP000005204    UP000053268    UP000053240    UP000007151    UP000037510   
PRIDE
H9JIW2   
Pfam
PF01344   Kelch_1
Interpro
IPR015915   Kelch-typ_b-propeller        + More
IPR006652   Kelch_1       
SUPFAM
SSF117281   SSF117281       
Gene 3D
2.120.10.80    
ProteinModelPortal
H9JIW2   A0A2W1BFV1   A0A2H1WX93   A0A194PZ56   A0A0N1PHE6   A0A212FP30   + More
A0A0L7LIA0  
PDB
6DO5     E-value=3.82998e-12,     Score=176

Ontologies

KEGG
101746972    K14966 host cell factor | (RefSeq) host cell factor 1
GO
GO:0071339   GO:0048188   GO:0005515   GO:0016706   GO:0031418   GO:0016491   GO:0016705   GO:0005634   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

Topology

Length:
838
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0858100000000001
Exp number, first 60 AAs:
0.01309
Total prob of N-in:
0.00332
outside
1  -  838
 
 

Population Genetic Test Statistics

Pi
239.761558
Theta
185.666694
Tajima's D
0.987935
CLR
0
CSRT
0.655067246637668
Interpretation
Possibly Positive selection
Peptides ×
Source Sequence Identity Evalue
26822097 IAGNAVPIK 100.00 6e-05
26280517 SFYTEHIHTDEEIR 100.00 6e-05
25044914 SGAAQGISEVVAGIGVQK 100.00 6e-05
26280517 SPAKMGVEIHK 100.00 0.011
28556443 IQYLLK 100.00 0.011
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