Gene

KWMTBOMO08208

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr14(+):1855107-1857990      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS      

Alternative Name

Reverse transcriptase

Location in the cell

Nuclear   Reliability : 2.3

CDS

ATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTTGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGATATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCTCCTCAGGCCGACTCGCGGCGTTCAATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAATGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCATCGGATGCGTTACCACCCGTCACCCCGATAGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCTAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACAGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATATACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCATGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGCTAGCTGTCGGGGCTCCGTGGTTCGTGAAGAACGTTGACCTACACGACGACCTGGGCCTCGAATCTATCCAGAAATACATGAAGTCAGCGTCGGAACGGTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTAGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGATGCCTTCAGCTCTAATACTAGGGGCAGGCTTAGGGACCCCGGTAACCGTACTCGTCGAACTCGACAAAGAGGTCGACGTGCAACCTAA

Protein

MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITLTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGSSGRLAAFNDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIYINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDHAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVKNVDLHDDLGLESIQKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTRGRLRDPGNRTRRTRQRGRRAT

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
V5GNJ2   V5GNF3   A0A139WA11   A0A139W8G9   A0A2S2PR14   J9KKL3   A0A2S2QEE0   X1WLB2   A0A2S2Q352   A0A023EYS8   A0A2H8U0H5   A0A224XF24   A0A3N5Z7I3   Q07995   A0A2S2PX53   A0A2S2PPK8   A0A2S2NGV8   A0A023F6S4   A0A2J7R7D0   J9KC83   A0A1Y1LKN6   K7IN67   A0A2J7RS81   A0A2S2N814   J9KCZ4   A0A2S2RAN7   A0A023EZE6   A0A2M4BDV6   A0A2M4BD67   A0A1Y1M7E9   A0A2J7Q627   A0A2J7R8R8   A0A1L8DIZ6   A0A0C9RJA4   A0A2J7PQB5   A0A1Y1KFR3   A0A2J7PDM0   J9LC21   A0A224XB44   X1WNI2   A0A2J7PVX3   A0A069DZC5   A0A069DW01   A0A2J7Q059   A0A2S2Q383   A0A2J7QUJ9   A0A2S2R9D4   X1WZH0   A0A023F7D1   A0A2J7PMP6   J9M522   A0A2J7RIW7   A0A224XI99   X1WTA1   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7RM10   A0A224XIB0   X1WN18   A0A2S2PBB4   A0A224X6U5   A0A2J7RL12   A0A2J7RB54   A0A2J7RPU2   A0A224X6S1   A0A2A4K8E7   A0A2J7QFL0   A0A2J7R2E1   A0A2J7PU96   A0A2J7RKP3   A0A2H8TKI9   A0A2J7QTW2   A0A2J7Q0Q6   A0A2J7RS77   A0A023F754   Q95SX7   A0A2A4K918  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
25474469    30086797    8387152    20075255    26334808    7753626    12537569   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    GALX01005359    JAB63107.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GGMR01019198    MBY31817.1    ABLF02029306    ABLF02029314    ABLF02060138    GGMS01006359    MBY75562.1    ABLF02042518    ABLF02057746    GGMS01002955    MBY72158.1    GBBI01004395    JAC14317.1    GFXV01007093    MBW18898.1    GFTR01008038    JAW08388.1    RPOV01000134    RPJ78669.1    S59870    AAB26437.2    GGMS01000737    MBY69940.1    GGMR01018716    MBY31335.1    GGMR01003407    MBY16026.1    GBBI01001646    JAC17066.1    NEVH01006736    PNF36716.1    ABLF02033757    GEZM01053022    JAV74219.1    NEVH01000269    PNF43694.1    GGMR01000676    MBY13295.1    ABLF02008463    GGMS01017914    MBY87117.1    GBBI01004571    JAC14141.1    GGFJ01001857    MBW50998.1    GGFJ01001858    MBW50999.1    GEZM01038405    JAV81653.1    NEVH01017542    PNF24034.1    NEVH01006721    PNF37225.1    GFDF01007661    JAV06423.1    GBYB01008290    JAG78057.1    NEVH01022639    PNF18527.1    GEZM01084969    JAV60363.1    NEVH01026386    PNF14434.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GFTR01008262    JAW08164.1    ABLF02008153    ABLF02008462    ABLF02008464    NEVH01020940    PNF20481.1    GBGD01000880    JAC88009.1    GBGD01000799    JAC88090.1    NEVH01020071    PNF21969.1    GGMS01002992    MBY72195.1    NEVH01010546    PNF32261.1    GGMS01017365    MBY86568.1    ABLF02034467    GBBI01001570    JAC17142.1    NEVH01023962    PNF17612.1    ABLF02024246    NEVH01003017    PNF40781.1    GFTR01008256    JAW08170.1    ABLF02037660    NEVH01018383    PNF23463.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    GFTR01008246    JAW08180.1    ABLF02021177    ABLF02027367    ABLF02066338    GGMR01014053    MBY26672.1    GFTR01008251    JAW08175.1    NEVH01002704    PNF41489.1    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    GFTR01008271    JAW08155.1    NWSH01000032    PCG80497.1    NEVH01014858    PNF27387.1    NEVH01007838    PNF34986.1    NEVH01021205    PNF19912.1    NEVH01002716    PNF41415.1    GFXV01002840    MBW14645.1    NEVH01011193    PNF32021.1    NEVH01019964    PNF22161.1    NEVH01000280    PNF43672.1    GBBI01001642    JAC17070.1    AY060438    AAL25477.1    PCG80496.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000235965    UP000002358    UP000218220    + More

PRIDE

Q93137    Q9XXW0    Q9BPQ0    Q95SX7   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
V5GNJ2   V5GNF3   A0A139WA11   A0A139W8G9   A0A2S2PR14   J9KKL3   A0A2S2QEE0   X1WLB2   A0A2S2Q352   A0A023EYS8   A0A2H8U0H5   A0A224XF24   A0A3N5Z7I3   Q07995   A0A2S2PX53   A0A2S2PPK8   A0A2S2NGV8   A0A023F6S4   A0A2J7R7D0   J9KC83   A0A1Y1LKN6   K7IN67   A0A2J7RS81   A0A2S2N814   J9KCZ4   A0A2S2RAN7   A0A023EZE6   A0A2M4BDV6   A0A2M4BD67   A0A1Y1M7E9   A0A2J7Q627   A0A2J7R8R8   A0A1L8DIZ6   A0A0C9RJA4   A0A2J7PQB5   A0A1Y1KFR3   A0A2J7PDM0   J9LC21   A0A224XB44   X1WNI2   A0A2J7PVX3   A0A069DZC5   A0A069DW01   A0A2J7Q059   A0A2S2Q383   A0A2J7QUJ9   A0A2S2R9D4   X1WZH0   A0A023F7D1   A0A2J7PMP6   J9M522   A0A2J7RIW7   A0A224XI99   X1WTA1   A0A2J7Q4F7   A0A2J7R4B7   A0A2J7RM10   A0A224XIB0   X1WN18   A0A2S2PBB4   A0A224X6U5   A0A2J7RL12   A0A2J7RB54   A0A2J7RPU2   A0A224X6S1   A0A2A4K8E7   A0A2J7QFL0   A0A2J7R2E1   A0A2J7PU96   A0A2J7RKP3   A0A2H8TKI9   A0A2J7QTW2   A0A2J7Q0Q6   A0A2J7RS77   A0A023F754   Q95SX7   A0A2A4K918  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0006313  

Length:

736

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.99666000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04097

outside

1  -  736

 

 

Pi

123.994009

Theta

11.167657

Tajima's D

1.666309

CLR

1.804667

CSRT

0.831658417079146

Interpretation

Uncertain