Gene

KWMTBOMO08205

Pre Gene Modal

BGIBMGA009465

Annotation

PREDICTED:_tRNA:m(4)X_modification_enzyme_TRM13_homolog_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr14(-):1729623-1735549      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.245 Mitochondrial   Reliability : 1.155 Nuclear   Reliability : 1.739

CDS

ATGTCCAAAAATATACACTCTACTAAGGAATCAAACGGACCTCAATGCCAGTACTTTGTACTGAGGAAAAAACGGCTGTGCCGTATGACTGTGCGTCCTGGCAATCAGTACTGCGGTGAACATCAACCCCCACCTAATGATTGCTTGTCTGACAAACGTATTGCATGTCCCAACGATCCTAAGCACACATGCTACATTAGCAAATTGGAAAAGCATCTAACCATCTGTAATGCTAGACAACAAGACCAGCCGCCCTACATTGAATACAACATCAATACTCCGATAACAAATGCAGTTCCTCGAATTTTGCTCAGCGAGATCCCTGGTGATATAATCATTCAGGTCATAAATAAAGTTAATTCATTATATGACAAATTTATCAAATCGAACATAGTATCAATACCAGAGCGCGCTATCCATGCTGCTGTAGCACCAGAGTTCAATGAGGCGGATCGGCAGGAGAGCTCCCGCCGACATTTGCGGCAAACATCTAGCTTGTTATGGCTCGTGGAAGAAGAGAACCTAGTGGATAATGAGACTTGCTATGTGGAACTTGGAGCTGGCAAAGGGCAGCTGTCGTTCTACGCGCACACGGCGTGGTGCGCGGGCGCGGGGTCCAGCGTGCTGCTGGTGGACCGCGCCACGCTGCGGCACAAGCGCGACGGGCGGCTGCGGGGGCGGGGCGCCGCGCGGCTGCGGGCCGAGTTGGCGCACCTGGCGCTGCACCGCGTGCCGGCCGCCGCCACCGCGCGCCGCCTCGTGGGCCTGGCCAAGCACCTGTGCGGCGTGGCCACCGACTACGCGCTGCGGTGCATGACATCGGAGGGCGTGCTGGGGAAGACCAGAGGCGTGGTGATCGCGACTTGCTGCCACCACCGCTGCGAATACTCCGCTTATGTCGGCAACCGACACCTACTGGACATGGGTGTAACCGCCGAAGACTTGAACGCGATGCTCGGGCTGGTGTCCTGGGCCACGTGCGGGGACGGCCGCAACCGACTCCACCGACAGAACAATCCGGCCAGCGACGAGCACTTAGCGACGACCGAAACCGATCACTCCAACAGTGAAGTCGGTTGTGACAATAATGTACCGGACGAGGCGCCCCCCGCCGCCGCAACCCACGAACAGCTGAAGCACAGCCTCAGTCGCGAGCAGAGGGAGCAGGTCGGCAGGAGAGCTAAGGCGCTGCTGGACTGGGGCAGGAAACTCTACTTAGAAGAAAAGGGCTTCAACGTGAAACTGTGTCACTACGTGCCCATCGGAGTGTCGCCGGAGAACGTCTGTATAGTCGCCACGAAAATGTGA

Protein

MSKNIHSTKESNGPQCQYFVLRKKRLCRMTVRPGNQYCGEHQPPPNDCLSDKRIACPNDPKHTCYISKLEKHLTICNARQQDQPPYIEYNINTPITNAVPRILLSEIPGDIIIQVINKVNSLYDKFIKSNIVSIPERAIHAAVAPEFNEADRQESSRRHLRQTSSLLWLVEEENLVDNETCYVELGAGKGQLSFYAHTAWCAGAGSSVLLVDRATLRHKRDGRLRGRGAARLRAELAHLALHRVPAAATARRLVGLAKHLCGVATDYALRCMTSEGVLGKTRGVVIATCCHHRCEYSAYVGNRHLLDMGVTAEDLNAMLGLVSWATCGDGRNRLHRQNNPASDEHLATTETDHSNSEVGCDNNVPDEAPPAAATHEQLKHSLSREQREQVGRRAKALLDWGRKLYLEEKGFNVKLCHYVPIGVSPENVCIVATKM

Uniprot

H9JIW4   A0A2H1WUJ5   A0A212EU66   D7EIE5   A0A1Y1K2W0   A0A194PZ51   + More
A0A026W2Y0   A0A158NEA2   E2A0A8   A0A151WSL1   Q16QR4   B0WSZ0   E2B648   U4UNG7   A0A0N8P1N6   A0A195FM28   A0A0L7R8E7   A0A151J0H1   A0A1W4V583   B3LVS8   A0A310SCU3   A0A1W4WH75   A0A1W4WS31   A0A182GM31   A0A0J7NHK8   F4WJC4   A0A0N0BBH0   A0A2J7RMD2   A0A088A5C4   A0A034VND0   A0A182XY74   A0A084VVB8   A0A0K8UED4   A0A0K8UKQ8   A0A1Q3F5D4   A0A182I9W5   A0A182SHS3   A0A154P931   A0A182TI60   B3P2K2   W8C6V1   Q7QEF3   A0A182VGU3   A0A0L0BQE4   A0A182X7H5   B4G3C1   A0A1W4WT32   A0A1I8NQ20   A0A182QDB4   B4MBN2   A0A182MZZ8   Q8SX24   B4KBP2   Q298B0   B4PVQ2   A0A1B0CVW7   A0A1B0FL81   A0A3B0JHK3   B4NHB3   A0A0A1XKJ1   K7J650   A0A2A3E537   A0A1B0B2Z3   B4I4E9   A0A0M4EQX1   A0A1A9VDP5   A0A1A9W5N8   A0A1I8MJT4   A0A232EVD5   A0A182J888   A0A182RYS4   A0A1A9ZSV2   A0A2M4ALY9   A0A1B0D3U1   A0A2M4CR58   A0A2M4CR64   A0A2M4CRB1   U5EU63   B4JYD5   A0A182MN80   A0A336MJC2   A0A1J1IQV7   A0A1A9YQ65   A0A0P4WC82   B4QYA5   A0A3R7SSN4   A0A0L8H6D4   A0A182FWE6   A0A0P5J474   A0A3M6THD2   A0A0P5FWJ7   A0A0P6GBY3   C3YCH1   A0A2B4S021  

Pubmed

19121390    22118469    18362917    19820115    28004739    26354079    + More
24508170    30249741    21347285    20798317    17510324    23537049    17994087    26483478    21719571    25348373    25244985    24438588    24495485    12364791    14747013    17210077    26108605    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    17550304    25830018    20075255    25315136    28648823    30382153    18563158   

EMBL

BABH01023052    ODYU01011129    SOQ56677.1    AGBW02012474    OWR45001.1    DS497678    + More
EFA11905.1    GEZM01096538    GEZM01096534    JAV54831.1    KQ459585    KPI98318.1    KK107455    QOIP01000010    EZA50432.1    RLU17668.1    ADTU01013183    ADTU01013184    GL435569    EFN73111.1    KQ982769    KYQ50846.1    CH477736    EAT36739.1    DS232078    EDS34123.1    GL445914    EFN88837.1    KB632375    ERL94013.1    CH902617    KPU80428.1    KQ981490    KYN41039.1    KQ414633    KOC67036.1    KQ980636    KYN14952.1    EDV43702.1    KQ777311    OAD52137.1    JXUM01073756    KQ562794    KXJ75118.1    LBMM01004910    KMQ91995.1    GL888182    EGI65702.1    KQ436019    KOX67568.1    NEVH01002562    PNF41990.1    GAKP01014968    JAC43984.1    ATLV01017170    KE525157    KFB41912.1    GDHF01027383    JAI24931.1    GDHF01025374    JAI26940.1    GFDL01012264    JAV22781.1    APCN01001063    KQ434846    KZC08352.1    CH954181    EDV48024.1    GAMC01004024    JAC02532.1    AAAB01008847    EAA06835.4    JRES01001623    KNC21424.1    CH479179    EDW24303.1    AXCN02001335    CH940656    EDW58503.2    AE014297    AY094893    AAF54134.2    AAM11246.1    CH933806    EDW14719.2    CM000070    EAL28045.1    CM000160    EDW97861.2    AJWK01031360    CCAG010013281    OUUW01000005    SPP80183.1    CH964272    EDW84589.2    GBXI01002825    JAD11467.1    KZ288364    PBC26873.1    JXJN01007738    CH480821    EDW55092.1    CP012526    ALC46810.1    NNAY01002011    OXU22314.1    GGFK01008431    MBW41752.1    AJVK01023693    GGFL01003638    MBW67816.1    GGFL01003639    MBW67817.1    GGFL01003637    MBW67815.1    GANO01001629    JAB58242.1    CH916377    EDV90697.1    AXCM01002614    UFQS01001315    UFQT01001315    SSX10307.1    SSX29995.1    CVRI01000055    CRL01478.1    GDRN01070236    JAI63915.1    CM000364    EDX11862.1    QCYY01002044    ROT73279.1    KQ419049    KOF84772.1    GDIQ01205469    JAK46256.1    RCHS01003600    RMX40654.1    GDIQ01249399    GDIQ01227908    JAK02326.1    GDIQ01208166    GDIQ01035573    JAN59164.1    GG666501    EEN62008.1    LSMT01000230    PFX22756.1   

Proteomes

UP000005204    UP000007151    UP000007266    UP000053268    UP000053097    UP000279307    + More
UP000005205    UP000000311    UP000075809    UP000008820    UP000002320    UP000008237    UP000030742    UP000007801    UP000078541    UP000053825    UP000078492    UP000192221    UP000192223    UP000069940    UP000249989    UP000036403    UP000007755    UP000053105    UP000235965    UP000005203    UP000076408    UP000030765    UP000075840    UP000075901    UP000076502    UP000075902    UP000008711    UP000007062    UP000075903    UP000037069    UP000076407    UP000008744    UP000095300    UP000075886    UP000008792    UP000075884    UP000000803    UP000009192    UP000001819    UP000002282    UP000092461    UP000092444    UP000268350    UP000007798    UP000002358    UP000242457    UP000092460    UP000001292    UP000092553    UP000078200    UP000091820    UP000095301    UP000215335    UP000075880    UP000075900    UP000092445    UP000092462    UP000001070    UP000075883    UP000183832    UP000092443    UP000000304    UP000283509    UP000053454    UP000069272    UP000275408    UP000001554    UP000225706   

PRIDE

H9JIW4    Q8SX24   

Pfam

PF05253   zf-U11-48K        + More
PF05206   TRM13
PF11722   zf-TRM13_CCCH
PF07687   M20_dimer
PF01546   Peptidase_M20

Interpro

IPR022776   TRM13/UPF0224_CHHC_Znf_dom        + More
IPR007871   Methyltransferase_TRM13       
IPR021721   Znf_CCCH-type_TRM13       
IPR039044   Trm13       
IPR029063   SAM-dependent_MTases       
IPR000727   T_SNARE_dom       
IPR011650   Peptidase_M20_dimer       
IPR036264   Bact_exopeptidase_dim_dom       
IPR002933   Peptidase_M20       
IPR010159   N-acyl_aa_amidohydrolase       

SUPFAM

SSF53335   SSF53335        + More
SSF55031   SSF55031       

CDD

cd05646  M20_AcylaseI_like

ProteinModelPortal

H9JIW4   A0A2H1WUJ5   A0A212EU66   D7EIE5   A0A1Y1K2W0   A0A194PZ51   + More
A0A026W2Y0   A0A158NEA2   E2A0A8   A0A151WSL1   Q16QR4   B0WSZ0   E2B648   U4UNG7   A0A0N8P1N6   A0A195FM28   A0A0L7R8E7   A0A151J0H1   A0A1W4V583   B3LVS8   A0A310SCU3   A0A1W4WH75   A0A1W4WS31   A0A182GM31   A0A0J7NHK8   F4WJC4   A0A0N0BBH0   A0A2J7RMD2   A0A088A5C4   A0A034VND0   A0A182XY74   A0A084VVB8   A0A0K8UED4   A0A0K8UKQ8   A0A1Q3F5D4   A0A182I9W5   A0A182SHS3   A0A154P931   A0A182TI60   B3P2K2   W8C6V1   Q7QEF3   A0A182VGU3   A0A0L0BQE4   A0A182X7H5   B4G3C1   A0A1W4WT32   A0A1I8NQ20   A0A182QDB4   B4MBN2   A0A182MZZ8   Q8SX24   B4KBP2   Q298B0   B4PVQ2   A0A1B0CVW7   A0A1B0FL81   A0A3B0JHK3   B4NHB3   A0A0A1XKJ1   K7J650   A0A2A3E537   A0A1B0B2Z3   B4I4E9   A0A0M4EQX1   A0A1A9VDP5   A0A1A9W5N8   A0A1I8MJT4   A0A232EVD5   A0A182J888   A0A182RYS4   A0A1A9ZSV2   A0A2M4ALY9   A0A1B0D3U1   A0A2M4CR58   A0A2M4CR64   A0A2M4CRB1   U5EU63   B4JYD5   A0A182MN80   A0A336MJC2   A0A1J1IQV7   A0A1A9YQ65   A0A0P4WC82   B4QYA5   A0A3R7SSN4   A0A0L8H6D4   A0A182FWE6   A0A0P5J474   A0A3M6THD2   A0A0P5FWJ7   A0A0P6GBY3   C3YCH1   A0A2B4S021  

KEGG

101740311    K15446 tRNA:m4X modification enzyme [EC:2.1.1.225] | (RefSeq) tRNA:m(4)X modification enzyme TRM13 h

GO

GO:0106050   GO:0030488   GO:0016021   GO:0006520   GO:0004046   GO:0008033   GO:0008168   GO:0005737   GO:0005515   GO:0046983   GO:0005634   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR12998  

Length:

435

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.25633

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02622

outside

1  -  435

 

 

Pi

200.544848

Theta

158.820064

Tajima's D

1.092396

CLR

0.050379

CSRT

0.691615419229039

Interpretation

Uncertain