Silkworm Genome Informatics Database

Gene

KWMTBOMO08202

Pre Gene Modal

BGIBMGA009466

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_TRIM33_[Bombyx_mori]

Location

Bomo_Chr14(-):1691706-1699759 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.477

CDS

ATGTCGCTGGCGGGCGGACGGGCGCGCCCGCACACGCCGCTGCGGCACCCGCACGTCACCTCCACCACGCACCCGCACCACCTGCACGGTACGTGGCGCCCCGCGGCCGCGCCGCTGCTCGTAGCGCTGCTGTGTGCTCATGTGTGCTCATGTGTGCTCATGTGTGCAGGGATGAGCGAGCTGAACCTGCGCGGGCTGCTCAACGCGGCGGGACGGGGCCGCGCGCCGCACCCCGCCGTGCACCACGCCTACCAGCAGATGATGAATGCATACGGTGGCACCGGGTACAACAGCGCTCCCAACCCCGGACAGGGGTTTAACGCCAGTCCAGCCGCCGCCCCCGGGTATAGCGGGGGCGCGCCCGGGGGTGCCACGGGGGGACTCGTGGGGGGACACGCGGGCCCCACCGGGGGACGGCGCAGTGTGGGGCCCCGTACTCCCTCGCCCGCCCCCCACTACCCTCCCGCTAAATGGCACATCCCACAACACAATTCACACAACGGCGGACCGGAGCTGGCGGCGGGAGGCGGCGCGCCCCCCAGCGGCGGCTCGGAGTACAAGATCACGCTGTCCCGGCCGCGCCCGCAGCCCGCCGTCGTCACCTCCACCAACCCCAAGACGCCCAGCCCCAGCCTCAACGGCGGCGCCAGCGAGCTGGACGCCGTGTGCGCCGAGTCCGTGCAGGACCTCATGGCCACCATCGCCAAGCTGGACTCCAACGGCGTGCAGGTGCTGCCCGAGCACTCCCCCGCGCCGCTCGTGCACTCCTCCACCGACCCCGACCCCGCCCCAGGTAAGAGCTTGGCCACGAATGCGGCGGGCGCAGCGGGCACGAGCGGCAGCGGAGGCGGAGGCGGGAGCGGGGATCCCAACGAGGACTGGTGCGCCGTGTGCATGGACGGGGGCGAGCTGATGTGCTGCGACAAGTGCCCTAAAGTGTTCCACCAGTACTGCCACATACCCACCATAGAAAAACTACCCGACGAGACTGAGAGCTGGCAGTGCCTTCTGTGCGTGAACTTCGCGGAGGTGGGGGAGGACGCGGCGCCCGGGGGCTCCGGCGCGGGCCCGGGGCTGGGCCCCCGCATGCAGCGCCTCGTGGAGCGGATCACGCTGGAGTTGTACTGCCAGTACGAACTCAGCCTGCACTTCAGGGAGCCCGTGCCGGCCGAGAACCTGCACTACCACTCCAAGATCGCTCGGCCCATGTGCCTGGACGCCATCCGCATGAAGCTGCAGCCGGGGTCGGCGTCCCGCTACGCACACGTGGAGCGCTTCCTGGCCGACGTGCGCCTGCTCTTCCGCAACGCCTACGCCTACAACCCGCCGGACTCGCAGGTGTACAAGGACGCGAAACGACTCGAAGAGTTCTTCGACGCTCAACTGTTGAAGTGGCTCCCGGAGTACGCTTACTGGAACGGCGAGGCCGAGGGCGAAGCGCCCACGAAACGACCCCGACTGGACTGA

Protein

MSLAGGRARPHTPLRHPHVTSTTHPHHLHGTWRPAAAPLLVALLCAHVCSCVLMCAGMSELNLRGLLNAAGRGRAPHPAVHHAYQQMMNAYGGTGYNSAPNPGQGFNASPAAAPGYSGGAPGGATGGLVGGHAGPTGGRRSVGPRTPSPAPHYPPAKWHIPQHNSHNGGPELAAGGGAPPSGGSEYKITLSRPRPQPAVVTSTNPKTPSPSLNGGASELDAVCAESVQDLMATIAKLDSNGVQVLPEHSPAPLVHSSTDPDPAPGKSLATNAAGAAGTSGSGGGGGSGDPNEDWCAVCMDGGELMCCDKCPKVFHQYCHIPTIEKLPDETESWQCLLCVNFAEVGEDAAPGGSGAGPGLGPRMQRLVERITLELYCQYELSLHFREPVPAENLHYHSKIARPMCLDAIRMKLQPGSASRYAHVERFLADVRLLFRNAYAYNPPDSQVYKDAKRLEEFFDAQLLKWLPEYAYWNGEAEGEAPTKRPRLD

Uniprot

H9JIW5 A0A0N1IG67 A0A2H1VU95 A0A0L7LAN5 A0A1Y1MAH6 D2A1V1 + More
T1GFT4 A0A0M9A6B6

Pubmed

19121390 26354079 26227816 28004739 18362917 19820115 + More

EMBL

BABH01023048 BABH01023049 BABH01023050 BABH01023051 KQ460889 KPJ11075.1 + More
ODYU01004479 SOQ44390.1 JTDY01001946 KOB72470.1 GEZM01036475 JAV82663.1 KQ971338 EFA02083.1 CAQQ02096653 CAQQ02096654 CAQQ02096655 CAQQ02096656 CAQQ02096657 KQ435740 KOX76823.1

Proteomes

UP000005204 UP000053240 UP000037510 UP000007266 UP000015102 UP000053105 + More

PRIDE

H9JIW5

Pfam

PF00628   PHD        + More
PF00643   zf-B_box
PF00439   Bromodomain

Interpro

IPR001487   Bromodomain        + More
IPR013083   Znf_RING/FYVE/PHD
IPR001965   Znf_PHD
IPR011011   Znf_FYVE_PHD
IPR001841   Znf_RING
IPR000315   Znf_B-box
IPR036427   Bromodomain-like_sf
IPR019786   Zinc_finger_PHD-type_CS
IPR019787   Znf_PHD-finger
IPR017907   Znf_RING_CS
IPR003649   Bbox_C

SUPFAM

SSF47370 SSF47370 + More
SSF57903 SSF57903

Gene 3D

1.20.920.10 3.30.40.10

CDD

cd00021 BBOX

ProteinModelPortal

H9JIW5 A0A0N1IG67 A0A2H1VU95 A0A0L7LAN5 A0A1Y1MAH6 D2A1V1 + More
T1GFT4 A0A0M9A6B6

PDB

5MR8 E-value=1.19751e-32, Score=350

KEGG

101740174 K08883 tripartite motif-containing protein 33 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase T

GO

GO:0008270 GO:0046872 GO:0016874 GO:0005515 GO:0005975 GO:0046983 GO:0005634 GO:0030145 GO:0006412 GO:0016876 GO:0043039

Length:

488

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.07566999999999

Exp number, first 60 AAs:

5.99608

Total prob of N-in:

0.26252

outside

1 - 488

Pi

161.915653

Theta

143.421696

Tajima's D

0.407169

CLR

0.856456

CSRT

0.48047597620119

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics