SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08146
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Full name
Integrin beta      
Location in the cell
Mitochondrial   Reliability : 3.111
 

Sequence

CDS
ATGCTTGTCAATTTTCTGCAGATGGAGGGACTCTATTTGATGAACTCGTTTTTCAAAAAGAAGCCCCAAAGGAGATGGACTTGGCAAAGTGCCGACAAAGTGACACGGAACGAGATCGATTTCATCATGGCGGATAAGAAGCGAATATTTACGGATGTCTCAGTGGTCAACAGGTTTAGTGCCGGCAGTGACCACCGACTTATTCGAGGAACCCTAAATATCGACATAAGGCTTGAAAGAACCCGGTTGATGAGATCGACTCTGCGCCCGTCTCTTCCCCAAATCATCCAAGTTTCCGAGAAGTTCCAATTGGAACTTCAAAATCGATTCAGTCTGCTGGATCCCAATGAGGACGTGAACGACGTGGTGGAGAACATGGCGGCGACACTACGTGAAGTTGGTGGAAGATACTTTGGATCACAGCGGAGAGTTCGTGAAGCCAAGCTAACCCCTGAGACTCTGGCATTAATGAGGAAACGACGAGAAGCCACTCCATCCGCAAGAGCTACAGCAGAGTACGCAACCTTAAATAAGGACGTCCGGAGGATGGTGAGGCGTGACTACCGTAGCTTTAATGCTAGACGCATTGAAGCTGCGATAGAGCGCAATAAAGGCCTTAAAGCCCTTGTACGGACGTCTAAAAGTGCTCCTCTGCTTAAGCTTAAGCGAGAAGATGGTTCTATAGTTACTTCCAAGCCAGAAATCTTAGGCGAGGTCGAAAAATATTATGGCAAACTCTACGCAATGCACACTTCTCTACCTACACCCGCCAACCGAGCTAGTGACAGCCGAGCACCACTTACTCGGCATTACTCGGATGATGTCCCGGACATCAGCATCGGGGAGATTCGGATGGCCCTGGAACAGCTCAAAAATGGTAGAGCGCCTGGTGAAGATGGAATTACTACGGAGCTACTGAAATCCGGAGGGGTTCCTATCCTGAAGGAATTACGGAGCCTGTACAATTCCGTCATACACAATGGGACTACACCATTGGCGTGGACAAGGAGTCGGGTCATGTTGTTCTTCAAGAAAGGTGATAAAACTTTGTTGAAGAACTATAGACCGATATCTCTTTTGAGCCACGTCTACAAGGTCTTTTCTAGGGTCATTACTAATCGTCTCGCCCGAAGGCTTGATGAATGCCAGCCACCGGAGCAGGCTGGGTTTCGAAAGGGTTACAATACCGTAGACCATATTCACACCCTCAGACAGATTATAGAAAAGTCTACAGAATATAATCTGCCACTTTGCGTGGCTTTCGTGGACTACGAGAAAGCCTTTGACTCTATCGAGACCTGGTCAGTTCTGGAATCCTTACAGCGATGCCAGATAGACTATCGCTATATCGAGGTGTTGAAAAGTCTATACGAAGCCGCGACGATGACCGTACAAATCCAGGATTGCCAGTCTAGACCTATCAAGCTGCAGCGGGGTGTCCGACAGGGAGATGTTATATCTCCGAAACTGTTCACCGCTGCACTTGAAGATGTCTTCAAGACGCTGGACTGGAAAACATGTGGAATCAACGTCAACGGAGAGTACATGTCACACCTTCGATTTGCCGATGACATAGTCTTAATGTCGGAATCGCTGGAGGACCTCAGTCGTATGCTCAACGATCTCAATGCTGCTTCCCGATGCGTGGGACTGCGGATGAACCTTGACAAGACGAAAGTCATGTTCAATGATAAAATCGTCCCGGGCCAAGTTACCATCTCGAATGCAGTCATTGAAGAGGTAAAAGACTTTGTCTACCTCGGTCAGGCTATCCAGCTTGGCCGTGGTAACTTCAATACAGAGATTGAGAGACGCATACGACTGGGTTGGTCGGCATTTGGGAAATTCCGTGCAATACTCACCTCGCAAATTCCTCAATGCCTGAAGACAAAAGTCTTTAACCAGTGCATTCTCCCCGCTATGACCTACGGCGCGGAAACCTGGACACTGACGGCAGGGCTGGCCCATAAGTTAAGAGTCGCACAGCGGGCGATGGAGAGAGCTATGCTAGGTATTTCTCTAAGGGACAAAATCCGGAACGAAGAAATTCGACGGAGAACCAAAGTCGACGACATAGCTCTCAAAGTTAGCAGGCTGAAGTGGCAATGGGCCGGTCACATCTGTCGAGCCAGCGACGCCAGGTGGGGGAGGAAAGTCCTCGAATGGAGGCCACGGATGGGTATAAGGAGCGTGGGGCGTCCTCCAACCAGGTGGACTGACGACTTAGTGCGCACGGCGGGAAGTCGTTGGATGCGGAAGGCGGAGGACCGCATTATGTGGAAGGCATTGGGGAAGGCCTATGTCCAGCAGTGGGCAGATAAAGGCTGA
Protein
MLVNFLQMEGLYLMNSFFKKKPQRRWTWQSADKVTRNEIDFIMADKKRIFTDVSVVNRFSAGSDHRLIRGTLNIDIRLERTRLMRSTLRPSLPQIIQVSEKFQLELQNRFSLLDPNEDVNDVVENMAATLREVGGRYFGSQRRVREAKLTPETLALMRKRREATPSARATAEYATLNKDVRRMVRRDYRSFNARRIEAAIERNKGLKALVRTSKSAPLLKLKREDGSIVTSKPEILGEVEKYYGKLYAMHTSLPTPANRASDSRAPLTRHYSDDVPDISIGEIRMALEQLKNGRAPGEDGITTELLKSGGVPILKELRSLYNSVIHNGTTPLAWTRSRVMLFFKKGDKTLLKNYRPISLLSHVYKVFSRVITNRLARRLDECQPPEQAGFRKGYNTVDHIHTLRQIIEKSTEYNLPLCVAFVDYEKAFDSIETWSVLESLQRCQIDYRYIEVLKSLYEAATMTVQIQDCQSRPIKLQRGVRQGDVISPKLFTAALEDVFKTLDWKTCGINVNGEYMSHLRFADDIVLMSESLEDLSRMLNDLNAASRCVGLRMNLDKTKVMFNDKIVPGQVTISNAVIEEVKDFVYLGQAIQLGRGNFNTEIERRIRLGWSAFGKFRAILTSQIPQCLKTKVFNQCILPAMTYGAETWTLTAGLAHKLRVAQRAMERAMLGISLRDKIRNEEIRRRTKVDDIALKVSRLKWQWAGHICRASDARWGRKVLEWRPRMGIRSVGRPPTRWTDDLVRTAGSRWMRKAEDRIMWKALGKAYVQQWADKG

Summary

Similarity
Belongs to the integrin beta chain family.
Feature
chain  Integrin beta
EMBL
FJ265545    ADI61813.1    FJ265542    ADI61810.1    FJ265550    ADI61818.1    + More
FJ265551    ADI61819.1    FJ265549    ADI61817.1    FJ265543    ADI61811.1    FJ265544    ADI61812.1    RSAL01000057    RVE49824.1    RSAL01002130    RVE40575.1    RSAL01000220    RVE44071.1    MRZV01002136    PIK34564.1    ODYU01004088    SOQ43598.1    KZ149985    PZC75698.1    KZ149907    PZC78256.1    AAGJ04050748    FJ265561    ADI61829.1    FJ265562    ADI61830.1    MRZV01000899    PIK42833.1    JARK01001655    EYB84321.1    JARK01000173    EYC41342.1    JARK01001565    EYB89683.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    JARK01000388    EYC37469.1    JARK01001370    EYC16150.1    JARK01001354    EYC21986.1    GBBI01004876    JAC13836.1    FJ265564    ADI61832.1    FJ265563    ADI61831.1    JARK01001389    EYC11015.1    JARK01001639    EYB85201.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01001438    EYC02111.1    JARK01000347    EYC38051.1    JARK01001348    EYC25048.1    EYC25050.1    JARK01001473    EYB97806.1    JARK01001621    EYB86109.1    JARK01000460    EYC36749.1    JARK01001626    EYB85833.1    EYC25049.1    JARK01001340    EYC30828.1    GBBI01004877    JAC13835.1    EYC25046.1    GBGD01000453    JAC88436.1    GDKW01001596    JAI54999.1    JARK01001711    EYB81734.1    KZ150485    PZC70710.1    EYC16376.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    KZ150317    PZC71439.1    JARK01001353    EYC22263.1    JARK01001730    EYB81048.1    DS268411    EFP03057.1    ODYU01008249    SOQ51673.1    JARK01001543    EYB91356.1    DS268591    EFO92565.1    EYB91353.1    JARK01001630    EYB85641.1    JARK01001683    EYB82909.1    JARK01000248    EYC39628.1    JARK01001531    EYB92324.1    JARK01001568    EYB89432.1    JARK01001470    JARK01000204    EYB98082.1    EYC40602.1    JARK01000077    EYC43894.1    JARK01001380    EYC13322.1    JARK01001346    EYC26445.1    JARK01001500    JARK01001343    EYB95040.1    EYC28825.1    DS268444    EFP01729.1    EYB98081.1    EYC40601.1    JARK01001475    EYB97550.1    JARK01001421    EYC04912.1    EYC10874.1    JARK01000063    EYC44387.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    EYC33297.1    EYC30744.1    JARK01001497    EYB95322.1    JARK01001344    EYC28216.1    JARK01001581    EYB88505.1    JARK01001372    EYC15614.1    JARK01000249    EYC39611.1    JARK01000109    EYC42952.1    JARK01000165    EYC41537.1    JARK01001401    EYC08686.1    EYC03125.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00362   Integrin_beta
PF01826   TIL
PF13520   AA_permease_2
PF03372   Exo_endo_phos
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR032695   Integrin_dom_sf       
IPR036465   vWFA_dom_sf       
IPR015812   Integrin_bsu       
IPR002035   VWF_A       
IPR002369   Integrin_bsu_VWA       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR020846   MFS_dom       
IPR002293   AA/rel_permease1       
IPR029052   Metallo-depent_PP-like       
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       
SUPFAM
SSF56219   SSF56219        + More
SSF53300   SSF53300       
SSF69179   SSF69179       
SSF57567   SSF57567       
SSF56436   SSF56436       
PDB
6AR3     E-value=0.000718435,     Score=104

Ontologies

Topology

Subcellular location
Membrane  
Length:
775
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02735
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.00003
outside
1  -  775
 
 

Population Genetic Test Statistics

Pi
6.521712
Theta
13.374379
Tajima's D
-1.56735
CLR
421.275444
CSRT
0.0520473976301185
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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