Gene

KWMTBOMO08146

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr13(-):17630331-17632719      View in EpiBrowser

Full name

Integrin beta      

Location in the cell

Mitochondrial   Reliability : 3.111

CDS

ATGCTTGTCAATTTTCTGCAGATGGAGGGACTCTATTTGATGAACTCGTTTTTCAAAAAGAAGCCCCAAAGGAGATGGACTTGGCAAAGTGCCGACAAAGTGACACGGAACGAGATCGATTTCATCATGGCGGATAAGAAGCGAATATTTACGGATGTCTCAGTGGTCAACAGGTTTAGTGCCGGCAGTGACCACCGACTTATTCGAGGAACCCTAAATATCGACATAAGGCTTGAAAGAACCCGGTTGATGAGATCGACTCTGCGCCCGTCTCTTCCCCAAATCATCCAAGTTTCCGAGAAGTTCCAATTGGAACTTCAAAATCGATTCAGTCTGCTGGATCCCAATGAGGACGTGAACGACGTGGTGGAGAACATGGCGGCGACACTACGTGAAGTTGGTGGAAGATACTTTGGATCACAGCGGAGAGTTCGTGAAGCCAAGCTAACCCCTGAGACTCTGGCATTAATGAGGAAACGACGAGAAGCCACTCCATCCGCAAGAGCTACAGCAGAGTACGCAACCTTAAATAAGGACGTCCGGAGGATGGTGAGGCGTGACTACCGTAGCTTTAATGCTAGACGCATTGAAGCTGCGATAGAGCGCAATAAAGGCCTTAAAGCCCTTGTACGGACGTCTAAAAGTGCTCCTCTGCTTAAGCTTAAGCGAGAAGATGGTTCTATAGTTACTTCCAAGCCAGAAATCTTAGGCGAGGTCGAAAAATATTATGGCAAACTCTACGCAATGCACACTTCTCTACCTACACCCGCCAACCGAGCTAGTGACAGCCGAGCACCACTTACTCGGCATTACTCGGATGATGTCCCGGACATCAGCATCGGGGAGATTCGGATGGCCCTGGAACAGCTCAAAAATGGTAGAGCGCCTGGTGAAGATGGAATTACTACGGAGCTACTGAAATCCGGAGGGGTTCCTATCCTGAAGGAATTACGGAGCCTGTACAATTCCGTCATACACAATGGGACTACACCATTGGCGTGGACAAGGAGTCGGGTCATGTTGTTCTTCAAGAAAGGTGATAAAACTTTGTTGAAGAACTATAGACCGATATCTCTTTTGAGCCACGTCTACAAGGTCTTTTCTAGGGTCATTACTAATCGTCTCGCCCGAAGGCTTGATGAATGCCAGCCACCGGAGCAGGCTGGGTTTCGAAAGGGTTACAATACCGTAGACCATATTCACACCCTCAGACAGATTATAGAAAAGTCTACAGAATATAATCTGCCACTTTGCGTGGCTTTCGTGGACTACGAGAAAGCCTTTGACTCTATCGAGACCTGGTCAGTTCTGGAATCCTTACAGCGATGCCAGATAGACTATCGCTATATCGAGGTGTTGAAAAGTCTATACGAAGCCGCGACGATGACCGTACAAATCCAGGATTGCCAGTCTAGACCTATCAAGCTGCAGCGGGGTGTCCGACAGGGAGATGTTATATCTCCGAAACTGTTCACCGCTGCACTTGAAGATGTCTTCAAGACGCTGGACTGGAAAACATGTGGAATCAACGTCAACGGAGAGTACATGTCACACCTTCGATTTGCCGATGACATAGTCTTAATGTCGGAATCGCTGGAGGACCTCAGTCGTATGCTCAACGATCTCAATGCTGCTTCCCGATGCGTGGGACTGCGGATGAACCTTGACAAGACGAAAGTCATGTTCAATGATAAAATCGTCCCGGGCCAAGTTACCATCTCGAATGCAGTCATTGAAGAGGTAAAAGACTTTGTCTACCTCGGTCAGGCTATCCAGCTTGGCCGTGGTAACTTCAATACAGAGATTGAGAGACGCATACGACTGGGTTGGTCGGCATTTGGGAAATTCCGTGCAATACTCACCTCGCAAATTCCTCAATGCCTGAAGACAAAAGTCTTTAACCAGTGCATTCTCCCCGCTATGACCTACGGCGCGGAAACCTGGACACTGACGGCAGGGCTGGCCCATAAGTTAAGAGTCGCACAGCGGGCGATGGAGAGAGCTATGCTAGGTATTTCTCTAAGGGACAAAATCCGGAACGAAGAAATTCGACGGAGAACCAAAGTCGACGACATAGCTCTCAAAGTTAGCAGGCTGAAGTGGCAATGGGCCGGTCACATCTGTCGAGCCAGCGACGCCAGGTGGGGGAGGAAAGTCCTCGAATGGAGGCCACGGATGGGTATAAGGAGCGTGGGGCGTCCTCCAACCAGGTGGACTGACGACTTAGTGCGCACGGCGGGAAGTCGTTGGATGCGGAAGGCGGAGGACCGCATTATGTGGAAGGCATTGGGGAAGGCCTATGTCCAGCAGTGGGCAGATAAAGGCTGA

Protein

MLVNFLQMEGLYLMNSFFKKKPQRRWTWQSADKVTRNEIDFIMADKKRIFTDVSVVNRFSAGSDHRLIRGTLNIDIRLERTRLMRSTLRPSLPQIIQVSEKFQLELQNRFSLLDPNEDVNDVVENMAATLREVGGRYFGSQRRVREAKLTPETLALMRKRREATPSARATAEYATLNKDVRRMVRRDYRSFNARRIEAAIERNKGLKALVRTSKSAPLLKLKREDGSIVTSKPEILGEVEKYYGKLYAMHTSLPTPANRASDSRAPLTRHYSDDVPDISIGEIRMALEQLKNGRAPGEDGITTELLKSGGVPILKELRSLYNSVIHNGTTPLAWTRSRVMLFFKKGDKTLLKNYRPISLLSHVYKVFSRVITNRLARRLDECQPPEQAGFRKGYNTVDHIHTLRQIIEKSTEYNLPLCVAFVDYEKAFDSIETWSVLESLQRCQIDYRYIEVLKSLYEAATMTVQIQDCQSRPIKLQRGVRQGDVISPKLFTAALEDVFKTLDWKTCGINVNGEYMSHLRFADDIVLMSESLEDLSRMLNDLNAASRCVGLRMNLDKTKVMFNDKIVPGQVTISNAVIEEVKDFVYLGQAIQLGRGNFNTEIERRIRLGWSAFGKFRAILTSQIPQCLKTKVFNQCILPAMTYGAETWTLTAGLAHKLRVAQRAMERAMLGISLRDKIRNEEIRRRTKVDDIALKVSRLKWQWAGHICRASDARWGRKVLEWRPRMGIRSVGRPPTRWTDDLVRTAGSRWMRKAEDRIMWKALGKAYVQQWADKG

Similarity

Belongs to the integrin beta chain family.

Feature

chain  Integrin beta

Uniprot

D7F160   D7F157   D7F165   D7F166   D7F164   D7F158   + More
D7F159   A0A437BHD1   A0A3S2KX72   A0A437B0R4   A0A2G8JFM9   A0A2H1VS24   A0A2W1BLC9   A0A2W1BZV1   A0A0K0FAW8   W4YXJ0   D7F176   D7F177   A0A2G8K4F2   A0A016S1D2   A0A016WPY4   A0A016SG46   A0A016TK11   A0A016W4R1   A0A016WCB8   A0A016ULU9   A0A016V419   A0A023EXV2   D7F179   D7F178   A0A0N5C0B1   A0A016U784   A0A016S403   A0A016T7J7   A0A016THC6   A0A016WEQ1   A0A016VEC1   A0A016VCD9   A0A016T590   A0A016S795   A0A016WA79   A0A016S5B2   A0A1S3HCU5   A0A016VBP7   A0A016VVN3   A0A023EWU8   A0A016VCU3   A0A069DX96   A0A0P4VWD0   A0A016RUR3   A0A2W1BCS2   A0A016UN79   A0A016RV73   A0A2W1B5F8   A0A016V6A2   A0A016RRX8   E3LN61   A0A2H1WF27   A0A016SLV8   E3NC15   A0A016SKW2   A0A016S5A1   A0A016RY50   A0A016WKT9   A0A016SPR9   A0A016SGC3   A0A016T5Z1   A0A016WVQ3   A0A016UEM0   A0A016VGA0   A0A016SX67   E3MH09   A0A016T636   A0A016T4C4   A0A016TQJ1   A0A016U6B7   A0A016WYN9   A0A016SCL7   A0A016W1X2   A0A016VT25   A0A016SY13   A0A016VLP0   A0A016SCZ8   A0A016UJS4   A0A2H2JFN0   A0A016WJ50   A0A016WUN2   A0A016WQM8   A0A016U123   A0A016TK92  

Pubmed

20470440    29023486    28756777    25730766    25474469    26334808    + More
27129103   

EMBL

FJ265545    ADI61813.1    FJ265542    ADI61810.1    FJ265550    ADI61818.1    + More
FJ265551    ADI61819.1    FJ265549    ADI61817.1    FJ265543    ADI61811.1    FJ265544    ADI61812.1    RSAL01000057    RVE49824.1    RSAL01002130    RVE40575.1    RSAL01000220    RVE44071.1    MRZV01002136    PIK34564.1    ODYU01004088    SOQ43598.1    KZ149985    PZC75698.1    KZ149907    PZC78256.1    AAGJ04050748    FJ265561    ADI61829.1    FJ265562    ADI61830.1    MRZV01000899    PIK42833.1    JARK01001655    EYB84321.1    JARK01000173    EYC41342.1    JARK01001565    EYB89683.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    JARK01000388    EYC37469.1    JARK01001370    EYC16150.1    JARK01001354    EYC21986.1    GBBI01004876    JAC13836.1    FJ265564    ADI61832.1    FJ265563    ADI61831.1    JARK01001389    EYC11015.1    JARK01001639    EYB85201.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01001438    EYC02111.1    JARK01000347    EYC38051.1    JARK01001348    EYC25048.1    EYC25050.1    JARK01001473    EYB97806.1    JARK01001621    EYB86109.1    JARK01000460    EYC36749.1    JARK01001626    EYB85833.1    EYC25049.1    JARK01001340    EYC30828.1    GBBI01004877    JAC13835.1    EYC25046.1    GBGD01000453    JAC88436.1    GDKW01001596    JAI54999.1    JARK01001711    EYB81734.1    KZ150485    PZC70710.1    EYC16376.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    KZ150317    PZC71439.1    JARK01001353    EYC22263.1    JARK01001730    EYB81048.1    DS268411    EFP03057.1    ODYU01008249    SOQ51673.1    JARK01001543    EYB91356.1    DS268591    EFO92565.1    EYB91353.1    JARK01001630    EYB85641.1    JARK01001683    EYB82909.1    JARK01000248    EYC39628.1    JARK01001531    EYB92324.1    JARK01001568    EYB89432.1    JARK01001470    JARK01000204    EYB98082.1    EYC40602.1    JARK01000077    EYC43894.1    JARK01001380    EYC13322.1    JARK01001346    EYC26445.1    JARK01001500    JARK01001343    EYB95040.1    EYC28825.1    DS268444    EFP01729.1    EYB98081.1    EYC40601.1    JARK01001475    EYB97550.1    JARK01001421    EYC04912.1    EYC10874.1    JARK01000063    EYC44387.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    EYC33297.1    EYC30744.1    JARK01001497    EYB95322.1    JARK01001344    EYC28216.1    JARK01001581    EYB88505.1    JARK01001372    EYC15614.1    JARK01000249    EYC39611.1    JARK01000109    EYC42952.1    JARK01000165    EYC41537.1    JARK01001401    EYC08686.1    EYC03125.1   

Proteomes

UP000283053    UP000230750    UP000035680    UP000007110    UP000024635    UP000046392    + More
UP000085678    UP000008281    UP000005237   

PRIDE

D7F160    D7F157    D7F165    D7F166    D7F164    D7F158    + More
D7F159    D7F176    D7F177    D7F179    D7F178   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00362   Integrin_beta
PF01826   TIL
PF13520   AA_permease_2
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR032695   Integrin_dom_sf       
IPR036465   vWFA_dom_sf       
IPR015812   Integrin_bsu       
IPR002035   VWF_A       
IPR002369   Integrin_bsu_VWA       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR020846   MFS_dom       
IPR002293   AA/rel_permease1       
IPR029052   Metallo-depent_PP-like       
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       

SUPFAM

SSF56219   SSF56219        + More
SSF53300   SSF53300       
SSF69179   SSF69179       
SSF57567   SSF57567       
SSF56436   SSF56436       

Gene 3D

3.60.10.10     3.40.50.410     3.60.21.10     3.10.100.10    

CDD

cd06174  MFS

ProteinModelPortal

D7F160   D7F157   D7F165   D7F166   D7F164   D7F158   + More
D7F159   A0A437BHD1   A0A3S2KX72   A0A437B0R4   A0A2G8JFM9   A0A2H1VS24   A0A2W1BLC9   A0A2W1BZV1   A0A0K0FAW8   W4YXJ0   D7F176   D7F177   A0A2G8K4F2   A0A016S1D2   A0A016WPY4   A0A016SG46   A0A016TK11   A0A016W4R1   A0A016WCB8   A0A016ULU9   A0A016V419   A0A023EXV2   D7F179   D7F178   A0A0N5C0B1   A0A016U784   A0A016S403   A0A016T7J7   A0A016THC6   A0A016WEQ1   A0A016VEC1   A0A016VCD9   A0A016T590   A0A016S795   A0A016WA79   A0A016S5B2   A0A1S3HCU5   A0A016VBP7   A0A016VVN3   A0A023EWU8   A0A016VCU3   A0A069DX96   A0A0P4VWD0   A0A016RUR3   A0A2W1BCS2   A0A016UN79   A0A016RV73   A0A2W1B5F8   A0A016V6A2   A0A016RRX8   E3LN61   A0A2H1WF27   A0A016SLV8   E3NC15   A0A016SKW2   A0A016S5A1   A0A016RY50   A0A016WKT9   A0A016SPR9   A0A016SGC3   A0A016T5Z1   A0A016WVQ3   A0A016UEM0   A0A016VGA0   A0A016SX67   E3MH09   A0A016T636   A0A016T4C4   A0A016TQJ1   A0A016U6B7   A0A016WYN9   A0A016SCL7   A0A016W1X2   A0A016VT25   A0A016SY13   A0A016VLP0   A0A016SCZ8   A0A016UJS4   A0A2H2JFN0   A0A016WJ50   A0A016WUN2   A0A016WQM8   A0A016U123   A0A016TK92  

PDB

6AR3     E-value=0.000718435,     Score=104

KEGG

105841836    no KO assigned | (RefSeq) uncharacterized LOC105841836

GO

GO:0003964   GO:0004519  

PANTHER

PTHR10082  

Subcellular location

Membrane  

Length:

775

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02735

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00003

outside

1  -  775

 

 

Pi

6.521712

Theta

13.374379

Tajima's D

-1.56735

CLR

421.275444

CSRT

0.0520473976301185

Interpretation

Uncertain