Gene

KWMTBOMO08142  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001077

Annotation

PREDICTED:_R2D2_protein_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr13(+):17542570-17546355      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.417 Mitochondrial   Reliability : 1.184 Nuclear   Reliability : 1.511

CDS

ATGAAAACTCCCATAACAGTACTGCAAGAAATGATGATGAAACTTGGACAGATTCCAGAGTATGAATGTGTTGCTCAGTCAGGGCCCCAACACCAGGCCACATTTGAGTTCCGCTGTAAGGCTTTAGGTGAGTCTGTCTCTGCTTCTGCACGATCAAAGAGGGAAGCAAAGCAGGAAGCAGCCCGTGCCATGCTGTTGTGTCTTTCTACAATAGGTCACCGTGTACCCCCACCATTTGCTACTGAATTTACACAACCCTCTCATAGTAACCAATCGGCTGGCGAGTGCTCCGAGGGCAAAGCGCCCACAGTGGACAGTCGCAGCTATGTGGCGCTGCTGAAGGAGCTGTGCGAGGAGTACAAGCTGCCGGGCGTGGAGTACGCGCTGGTGGCGGACACTGGGCCCGCGCACATGCGCCTGTTCAGCGTGCGCGCCAGCATCGGCCTGCACTCGCGCGACGCCAGCGGCACCACCAAGCGACAGGCGCGACAAAAAGCCGCAGCCGACCTCTACTTGTTCCTGCGTGAAAACCTCTCGCGTCTCACTCATGATTTCGTTGAGGAACAAGCGCTGGTGCGAGCCCACGAGCGCGCCATGGAGCGGTTGGTGGAGACCACTCCCGCGCCCTGGAAGCCGGACCTCGGCCAGCGCGTCTCCGAGTACCATTACGGCCTCATCTCGCACACGGATCCCGAAAAACGCATGGCGGCTCGAGCCGTGCTATCCGAGACGGACGACATAGAGGAGGCGGCTGAGCGCGCGGCCGCGGCGCTGGAGCTGCAGACGTGCTGGGAGACCCTCGACCCGCTCCACGTGCTGAAGCTAGATGCGGCCCCGGCTCTAGCCTTCAGCGGACACTCGCGCGCGGACGCGGCCCGGGCGGCTCTGCGGTACCTGCGCCGAGCCCTGCGCGACGTCTCCCCTCCGCCGCCCGCCGCTCTGTGA

Protein

MKTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAARAMLLCLSTIGHRVPPPFATEFTQPSHSNQSAGECSEGKAPTVDSRSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASIGLHSRDASGTTKRQARQKAAADLYLFLRENLSRLTHDFVEEQALVRAHERAMERLVETTPAPWKPDLGQRVSEYHYGLISHTDPEKRMAARAVLSETDDIEEAAERAAAALELQTCWETLDPLHVLKLDAAPALAFSGHSRADAARAALRYLRRALRDVSPPPPAAL

Uniprot

D7UT10   H9IUZ7   A0A2H1WI92   A0A194RFL9   V9VJY0   A0A2A4JK94   + More
A0A2A4JKC6   E2CA48   A0A026X032   A0A151WUC5   A0A195D3C1   E9IIV4   A0A151J9W2   A0A195FJM1   E2AZY9   A0A195BBY8   A0A158P2F5   F4WDX5   A0A0N0U4W0   A0A067RTI5   A0A154PGM9   A0A0C9RG95   A0A2A3E9H4   A0A232F2Q1   K7JIP7   A0A0N7Z943   T1H7Y6   A0A088AS30   A0A069DYK3   A0A310SJL1   A0A0L7QTZ5   A0A224XNX1   A0A146MGP0   A0A023F654   A0A0M3QU41   A0A3B0KHB7   A0A3B0JUJ1   B4GKB9   A0A0R3NQQ4   Q29P93   A0A1Y1N863   A0A067ZUY0  

Pubmed

19121390    26354079    20798317    24508170    30249741    21282665    + More
21347285    21719571    24845553    28648823    20075255    27129103    26334808    26823975    25474469    17994087    15632085    28004739   

EMBL

AB566385    BAJ11654.1    BABH01000030    BABH01000031    ODYU01008831    SOQ52778.1    + More
KQ460297    KPJ16254.1    KF717086    AHC98011.1    NWSH01001282    PCG71853.1    PCG71852.1    GL453920    EFN75203.1    KK107069    QOIP01000002    EZA60759.1    RLU25663.1    KQ982753    KYQ51235.1    KQ976885    KYN07398.1    GL763562    EFZ19485.1    KQ979404    KYN21689.1    KQ981523    KYN40199.1    GL444289    EFN60992.1    KQ976530    KYM81710.1    ADTU01007304    GL888096    EGI67607.1    KQ435816    KOX72632.1    KK852427    KDR24115.1    KQ434893    KZC10624.1    GBYB01006071    JAG75838.1    KZ288329    PBC27932.1    NNAY01001113    OXU25096.1    AAZX01003361    GDKW01001587    JAI55008.1    ACPB03000358    GBGD01002240    JAC86649.1    KQ765917    OAD53780.1    KQ414736    KOC62095.1    GFTR01004898    JAW11528.1    GDHC01000244    JAQ18385.1    GBBI01002027    JAC16685.1    CP012523    ALC39969.1    OUUW01000010    SPP85779.1    SPP85777.1    CH479184    EDW37085.1    CH379058    KRT03464.1    EAL34400.2    GEZM01013584    GEZM01013582    JAV92456.1    KF192312    AHY18682.1   

Proteomes

UP000005204    UP000053240    UP000218220    UP000008237    UP000053097    UP000279307    + More
UP000075809    UP000078542    UP000078492    UP000078541    UP000000311    UP000078540    UP000005205    UP000007755    UP000053105    UP000027135    UP000076502    UP000242457    UP000215335    UP000002358    UP000015103    UP000005203    UP000053825    UP000092553    UP000268350    UP000008744    UP000001819   

PRIDE

D7UT10    H9IUZ7   

Pfam

PF00035   dsrm        + More
PF16482   Staufen_C

Interpro

IPR014720   dsRBD_dom        + More
IPR032478   Staufen_C       

CDD

cd00048  DSRM

ProteinModelPortal

D7UT10   H9IUZ7   A0A2H1WI92   A0A194RFL9   V9VJY0   A0A2A4JK94   + More
A0A2A4JKC6   E2CA48   A0A026X032   A0A151WUC5   A0A195D3C1   E9IIV4   A0A151J9W2   A0A195FJM1   E2AZY9   A0A195BBY8   A0A158P2F5   F4WDX5   A0A0N0U4W0   A0A067RTI5   A0A154PGM9   A0A0C9RG95   A0A2A3E9H4   A0A232F2Q1   K7JIP7   A0A0N7Z943   T1H7Y6   A0A088AS30   A0A069DYK3   A0A310SJL1   A0A0L7QTZ5   A0A224XNX1   A0A146MGP0   A0A023F654   A0A0M3QU41   A0A3B0KHB7   A0A3B0JUJ1   B4GKB9   A0A0R3NQQ4   Q29P93   A0A1Y1N863   A0A067ZUY0  

PDB

5NPG     E-value=6.10139e-07,     Score=127

KEGG

100499494    K18420 RISC-loading complex subunit TARBP2 | (RefSeq) R2D2; R2D2 protein

GO

GO:0030422   GO:0003725   GO:0008047   GO:0016301   GO:0003723   GO:0030718   GO:0010586   GO:0007417   GO:0048132   GO:0009047   GO:1905172   GO:0070920   GO:0031054   GO:0005737  

Length:

314

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0036

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.02240

outside

1  -  314

 

 

Pi

2.043422

Theta

4.499955

Tajima's D

-1.803457

CLR

608.778846

CSRT

0.023598820058997

Interpretation

Possibly Positive selection