Gene

KWMTBOMO08138

Pre Gene Modal

BGIBMGA001075

Annotation

PREDICTED:_phosphatidylcholine:ceramide_cholinephosphotransferase_2-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr13(+):17477060-17480034      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.677

CDS

ATGACGATCGCAGCACGCTCCCCAGATAAGGAGCCGTCGCCACCAAAACAAATTAACTTCGCCGAGCCGCTAGTGGAGTCTGTGCGTGTGTATCTCGCAAATGAAGTGCCTTCCAAGCAGCTAGCCCTCGTGCCCTGCGTGCCCGCGTGCCGGCCCTCGCCCCCGCCGACTCCTCCCGTCTGTGATGTCGACATAGCCTCTCAGACCGCTCGCGAAGAGATCAAGGGAATCAACTTCGAGGCGCGCTTCAAACGGAATGACCTAAACAACAATCCTCCTCGCCAACAAAACGACCAACCACAAAACGGCACCATGCCCAGCCAAGCGGAACTCATGCAGAGGCAACCGCTCTTGGCCCGCACCACCAAAACAGACGCACCGCAGCCAGCCACGGACGAGTCCGACCCTGACCAGGACCACTCTCCGCAGAGAACGCACACCGGCGACTTCATCATAGAGTTACCTCCGGGCACCGTCAGAGAAGAAAGATACCCTAAAGAAATATGGAAAACGATTCTATCATTTTTCTTCCTATTCATGTGCGTTTGCATCAACATGATTTCACTATCGCTGGTGCACGAGCGACTGCCGGACCGGAACACGACGAAGCCGCTCAACGACATAGTGTTAGACAACGTGCCGGCGCACGACTGGGGCCTGGCGGTCTCCGAGTACCTGATCATGGTGTCAACTACGGTGGCGATGCTAGTGGTCGTGTTCCACAAGCACCGCTTCATCGTGGCGCGTCGGCTGTTCTTCATCATCGGCCTGCTGTACTTGTACCGCTCGATCACGATGTTCGTGACCGTGTTGCCGGTGTCCAGCATGACGTACACCTGTAGCCCAAAGAGCAACAGCACGGCCCCGCTGCTCATCATCAAGAGAATGTTCTACTTGATATCCGGCTTCGGGCTCTCGATAAACGGAAAACACACATACTGTGGAGACTACATATACTCGGGGCACACGATGGTGTTGGTGCTCAGCTATCTGATAGTCGCGGAATACTCACCCAAGAAGTTGTGGCCAATGCACTGGGCGATGGCGGGCTCCGCCGTGATGGGCGTCTCGTTCGTCCTGCTCGCCCACGGTCACTACACCGTGGACGTGGAAACGGATACAACCATTACATGA

Protein

MTIAARSPDKEPSPPKQINFAEPLVESVRVYLANEVPSKQLALVPCVPACRPSPPPTPPVCDVDIASQTAREEIKGINFEARFKRNDLNNNPPRQQNDQPQNGTMPSQAELMQRQPLLARTTKTDAPQPATDESDPDQDHSPQRTHTGDFIIELPPGTVREERYPKEIWKTILSFFFLFMCVCINMISLSLVHERLPDRNTTKPLNDIVLDNVPAHDWGLAVSEYLIMVSTTVAMLVVVFHKHRFIVARRLFFIIGLLYLYRSITMFVTVLPVSSMTYTCSPKSNSTAPLLIIKRMFYLISGFGLSINGKHTYCGDYIYSGHTMVLVLSYLIVAEYSPKKLWPMHWAMAGSAVMGVSFVLLAHGHYTVDVETDTTIT

Uniprot

H9IUZ5   A0A2H1WSV0   A0A2A4J8T3   A0A2W1C4I3   A0A194Q6B4   A0A194RJX4   + More
A0A0M8ZQK7   V9I9T6   A0A2A3EDQ8   V9IB60   A0A0L7RGZ2   E2AM13   A0A139W971   A0A139W966   K7J605   A0A026W8W8   A0A154PCZ4   A0A088AN88   A0A1B6C4E3   A0A1B6C209   A0A1B6E5A4   A0A0C9RA80   A0A0C9QNL7   A0A1W4WWY5   V5GRY5   E0VSX9   A0A2J7PY50   A0A224XHQ6   A0A023F4W2   A0A067QXD3   A0A146LG08   A0A0A9Z724   A0A0A9W2M5   A0A0A9XSF9   T1HMV0   A0A0K8SX40   A0A0A9YCX7   A0A0K8SXG5  

Pubmed

19121390    28756777    26354079    20798317    18362917    19820115    + More
20075255    24508170    20566863    25474469    24845553    26823975    25401762   

EMBL

BABH01000043    ODYU01010747    SOQ56052.1    NWSH01002346    PCG68475.1    KZ149891    + More
PZC79053.1    KQ459439    KPJ01073.1    KQ460297    KPJ16251.1    KQ436008    KOX67623.1    JR037636    AEY57883.1    KZ288292    PBC29151.1    JR037635    AEY57882.1    KQ414596    KOC69961.1    GL440703    EFN65533.1    KQ972625    KXZ75838.1    KXZ75837.1    KK107341    EZA52428.1    KQ434878    KZC09799.1    GEDC01028941    JAS08357.1    GEDC01029999    GEDC01001733    JAS07299.1    JAS35565.1    GEDC01004186    JAS33112.1    GBYB01005163    GBYB01005165    JAG74930.1    JAG74932.1    GBYB01005164    JAG74931.1    GALX01004069    JAB64397.1    DS235758    EEB16485.1    NEVH01020850    PNF21261.1    GFTR01005852    JAW10574.1    GBBI01002649    JAC16063.1    KK853245    KDR09403.1    GDHC01011561    JAQ07068.1    GBHO01041945    GBHO01041940    GBHO01041218    GBHO01041217    GBHO01041216    GBHO01041215    GBHO01041214    GBHO01041213    GBHO01023799    GBHO01003908    GDHC01015134    JAG01659.1    JAG01664.1    JAG02386.1    JAG02387.1    JAG02388.1    JAG02389.1    JAG02390.1    JAG02391.1    JAG19805.1    JAG39696.1    JAQ03495.1    GBHO01041943    GBHO01041220    GBHO01023801    GBHO01012669    GBHO01012666    GBRD01007953    GDHC01014711    GDHC01012960    JAG01661.1    JAG02384.1    JAG19803.1    JAG30935.1    JAG30938.1    JAG57868.1    JAQ03918.1    JAQ05669.1    GBHO01041212    GBHO01021018    GBHO01012671    GBHO01012670    GBHO01012668    GDHC01008049    JAG02392.1    JAG22586.1    JAG30933.1    JAG30934.1    JAG30936.1    JAQ10580.1    ACPB03008518    GBRD01007954    JAG57867.1    GBHO01041219    GBHO01041211    GBHO01023797    GBHO01012672    GBHO01012667    JAG02385.1    JAG02393.1    JAG19807.1    JAG30932.1    JAG30937.1    GBRD01007955    JAG57866.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000053105    UP000242457    + More
UP000053825    UP000000311    UP000007266    UP000002358    UP000053097    UP000076502    UP000005203    UP000192223    UP000009046    UP000235965    UP000027135    UP000015103   

PRIDE

H9IUZ5   

Pfam

PF14360   PAP2_C

Interpro

IPR025749   Sphingomyelin_synth-like_dom       

ProteinModelPortal

H9IUZ5   A0A2H1WSV0   A0A2A4J8T3   A0A2W1C4I3   A0A194Q6B4   A0A194RJX4   + More
A0A0M8ZQK7   V9I9T6   A0A2A3EDQ8   V9IB60   A0A0L7RGZ2   E2AM13   A0A139W971   A0A139W966   K7J605   A0A026W8W8   A0A154PCZ4   A0A088AN88   A0A1B6C4E3   A0A1B6C209   A0A1B6E5A4   A0A0C9RA80   A0A0C9QNL7   A0A1W4WWY5   V5GRY5   E0VSX9   A0A2J7PY50   A0A224XHQ6   A0A023F4W2   A0A067QXD3   A0A146LG08   A0A0A9Z724   A0A0A9W2M5   A0A0A9XSF9   T1HMV0   A0A0K8SX40   A0A0A9YCX7   A0A0K8SXG5  

KEGG

101746851    K04714 shingomyelin synthase [EC:2.7.8.27] | (RefSeq) phosphatidylcholine:ceramide cholinephosphotra

PATHWAY

00600    Sphingolipid metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016740   GO:0033188   GO:0006686   GO:0030148   GO:0047493   GO:0005887   GO:0030176   GO:0030173   GO:0046513  

Length:

377

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

125.48639

Exp number, first 60 AAs:

0

Total prob of N-in:

0.99928

inside

1  -  170

TMhelix

171  -  193

outside

194  -  217

TMhelix

218  -  240

inside

241  -  250

TMhelix

251  -  273

outside

274  -  287

TMhelix

288  -  310

inside

311  -  316

TMhelix

317  -  334

outside

335  -  343

TMhelix

344  -  366

inside

367  -  377

 

 

Pi

21.187016

Theta

25.364846

Tajima's D

-0.494279

CLR

5.871875

CSRT

0.242937853107345

Interpretation

Uncertain