Gene

KWMTBOMO08125

Pre Gene Modal

BGIBMGA012813

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr13(+):16873402-16876373      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.467

CDS

ATGGATGGAAGGCCAAACGTACGGAAGCTTGCTGAGCCCGACACACGAGCGAAGACCCACACCGCTATTAATCAATGGGCCAACGATCGTCGCACTGAAACCACTGCCTCTGACCTCGACACGTGGACTAGTCTAAAGCGAAGTGTAAAAGATATATGTCACCAATACCTCCAACCATCACAACTGGTCAAAAAACAAGATTGGATGACAGATTCAATTTTGCAGCTTATGGAAGACAGGAGGCAATTTAAGGGTACAAATCCAGTAATGTATAAGCAAATCGATGTCACCATTCGAAAAGAGATTGCGAAAGCCAAGAATGATTACTACAGCAATAAGTGCGCGCACTTGGAAGATCTCCTTCGTAAACATGACAGCTTCAATGCGCACAAGCACATCAAGGAAATGGTTGGTCATAGACGGAAATCAATGAATACTCTGACCGATGCAGGTGGGAACCTCATTCTTGACACCGATGGCAAAAAGAGAGTGTGGTGTGACTATGTTGCAGAGATGTTTGCGGACTCATCGAGGAACATTTCACCGATCACTGATCGTAATGGTCCAGCTATGTTGCGATCTGAGGTTTTGCGGGCCTTGAAAGCTGCTAAAACAGGTAAATCACCGGGTCCTGATAATATACCGATCGAAATACTAAAGTTGCTGGAAGAAGATCAACTGGACGTTCTCACAGAGTTCTTCAACAACATCTACGAAACAGGCAATCTTCCTAGTGACTGGCTAAAATCCACATTCATCACGATACCCAAGAAGCAAAATGCCAAAAAATGTGGAGAGTATCGTATGATTAGTCTGATGAGCCATGTCCTAAAAGTATTCTTGAACATCATACAGAATAGAATACGGCCAAAATGTGATGAACAACTGGGCGATAGCCAATTTGGATTTCGATCTGGTGTTGGCACCAGAGAAGCTCTTTTCGCTCTCAACGTTCTCGTACAGAAATGCAGAGACATGCAAACTGATGTCTTTTTGTGCTTCATAGACTACGAAAAGGCATTTGACCGAGTTAAACATCATCAACTTTTTAGCCTTTTATGTGACATTGGTCTAGATGAGGCTGTGATGTCAAAAGCTCTTGAAAATCTTGAAGTGGGAATAGGAATCAACGGCAGGGTCGTTAACAACTTGCGTTATGCGGACGACACTATCCTTATTGCAGCATCGGAAGCCGATTTGCAAGCAATTGTGAATAAGGTTAATGAGTGCAGCGAAGAAGCCGGGTTGTCGATAAACATAAACAAGACCAAGTTCATGGTAGTCTCAAGAAACCCGGATTTGAGTTCAAGCGTATCTGTAGCTGGGAAACAACTAGAGCGGGTACGACAGTACAAGTATTTAGGGGCTTGGGTAAACGAAGCATGGGAATCTGATCAAGAAATCAAGACCCGGATAGAAACTGCTCGAGCCTCTTTTAATAAAATGAGGAAAGTTCTTTGCTGTCGTCAACTGAATATAAAGCTCCGAGTCAGGCTACTCATGTGCTATATCTGGCCTATCGTCATGTATGGTTGCGAAACGTGGACCCTGAAAGAGGACACTACAAGACGCCTACAGGCATTCGAGATGTGGTGCTACCGTCGCATGTTACGCATTGGTTGGACGCAGAGGATACGTACTTGGCACGTGTTGAGAAACGACTATGGATTAGGAACAGATTATGATTACCTCACATGGGCAGGTAAGCGGTGGTATTGTGACTTCTATCTTGACGCAGTAACGAATACCAACTAA

Protein

MDGRPNVRKLAEPDTRAKTHTAINQWANDRRTETTASDLDTWTSLKRSVKDICHQYLQPSQLVKKQDWMTDSILQLMEDRRQFKGTNPVMYKQIDVTIRKEIAKAKNDYYSNKCAHLEDLLRKHDSFNAHKHIKEMVGHRRKSMNTLTDAGGNLILDTDGKKRVWCDYVAEMFADSSRNISPITDRNGPAMLRSEVLRALKAAKTGKSPGPDNIPIEILKLLEEDQLDVLTEFFNNIYETGNLPSDWLKSTFITIPKKQNAKKCGEYRMISLMSHVLKVFLNIIQNRIRPKCDEQLGDSQFGFRSGVGTREALFALNVLVQKCRDMQTDVFLCFIDYEKAFDRVKHHQLFSLLCDIGLDEAVMSKALENLEVGIGINGRVVNNLRYADDTILIAASEADLQAIVNKVNECSEEAGLSININKTKFMVVSRNPDLSSSVSVAGKQLERVRQYKYLGAWVNEAWESDQEIKTRIETARASFNKMRKVLCCRQLNIKLRVRLLMCYIWPIVMYGCETWTLKEDTTRRLQAFEMWCYRRMLRIGWTQRIRTWHVLRNDYGLGTDYDYLTWAGKRWYCDFYLDAVTNTN

Uniprot

D5LB38   A0A2A4JBK9   A0A0J7KZE8   A0A2S2QAF2   W4Y5A2   A0A3S0ZV17   + More
A0A402F2Z0   A0A402EB12   A0A2H6KKM9   A0A402E768   A0A402EKB1   A0A402EKC4   A0A402EWU2   A0A402F9C1   A0A402F9A7   A0A402ET28   A0A402E7Q0   A0A443QYR6   A0A402ECS2   A0A402EBP1   A0A402E7R7   A0A2S2PMS6   A0A402EWP9   A0A402FC20   A0A2J7R2D1   A0A402EWI9   A0A402ET04   A0A402F125   A0A402EWN2   A0A2J7PHX9   A0A402EBC2   A0A402F3F3   A0A402EVG7   A0A402EST4   A0A402EKM3   A0A2J7RNM5   A0A2J7RLC6   A0A2V9X8L4   A0A2J7QMH0   A0A402F4E6   A0A2J7R639   A0A2J7R3B7   A0A2J7R7D2   A0A2J7PJ38   A0A2J7QLX7   A0A402F406   A0A402FAG4   A0A2J7RLG7   A0A2J7RRE4   A0A2J7PZN7   A0A2J7R4W1   A0A2J7QNQ3   A0A2J7PJ03   A0A2J7R696   A0A2J7QSZ5   A0A2J7QQQ3   A0A2J7RBL5   A0A2J7PBF1   A0A2J7RBL1   A0A2J7PF68   A0A2J7QCG2   A0A2J7Q649   A0A2J7PC89   A0A2J7RPX5   A0A2J7QEJ0   A0A2J7QMC5   A0A2J7PQH3   A0A2J7RAC6   A0A2J7RBD8   A0A2J7PVW0   A0A2J7PNH4   A0A2J7Q2Y3   A0A2J7RBX3   A0A2J7R8G1   A0A2J7QUD0   A0A2J7R8W8   A0A2J7RL19   A0A2J7PY33   A0A2J7R8P5   A0A2J7QJ13   A0A2J7RIL8   A0A2J7R901   A0A402EEU1   A0A2J7PT27   A0A2J7QJJ9   A0A2J7QI56   A0A2J7Q2T8   A0A402F575   A0A2J7Q6P7   A0A076N1B6   A0A2J7QGX8   H3B2Y3   A0A402EKK1   A0A2J7PW81   A0A2J7PTY0   A0A2J7REE7  

Pubmed

20470440    29078748    9215903   

EMBL

GU815089    ADF18552.1    NWSH01001998    PCG69477.1    LBMM01001656    KMQ95932.1    + More
GGMS01004979    MBY74182.1    AAGJ04160952    RQTK01000700    RUS75926.1    BDOT01000090    GCF50888.1    BDOT01000005    GCF41419.1    BDSA01000081    GBE63537.1    BDOT01000002    GCF39993.1    BDOT01000017    GCF44637.1    GCF44634.1    BDOT01000056    GCF48696.1    BDOT01000150    GCF53027.1    GCF53030.1    BDOT01000039    GCF47373.1    GCF40210.1    NCKU01003098    RWS08177.1    BDOT01000006    GCF41910.1    GCF41584.1    GCF40259.1    GGMR01018096    MBY30715.1    BDOT01000054    GCF48631.1    BDOT01000183    GCF53956.1    NEVH01007834    PNF34995.1    GCF48586.1    BDOT01000038    GCF47332.1    BDOT01000077    GCF50202.1    GCF48632.1    NEVH01025130    PNF15934.1    GCF41464.1    GCF50924.1    BDOT01000049    GCF48208.1    GCF47275.1    BDOT01000018    GCF44752.1    NEVH01002150    PNF42436.1    NEVH01002690    PNF41636.1    QIAP01000240    PYX61602.1    NEVH01013208    PNF29772.1    BDOT01000101    GCF51279.1    NEVH01006981    PNF36299.1    NEVH01007822    PNF35313.1    NEVH01006734    PNF36732.1    NEVH01024952    PNF16338.1    NEVH01013241    PNF29590.1    BDOT01000094    GCF51020.1    BDOT01000165    GCF53431.1    NEVH01002684    PNF41680.1    NEVH01000609    PNF43402.1    NEVH01020333    PNF21790.1    NEVH01007402    PNF35873.1    NEVH01012564    PNF30212.1    PNF16321.1    NEVH01006936    PNF36357.1    NEVH01011205    PNF31711.1    NEVH01012083    PNF30919.1    NEVH01005896    PNF38212.1    NEVH01027104    PNF13657.1    PNF38208.1    NEVH01026085    PNF14968.1    NEVH01016289    PNF26277.1    NEVH01017540    PNF24056.1    NEVH01027067    PNF13944.1    NEVH01020851    NEVH01013954    NEVH01006574    NEVH01001358    NEVH01001354    PNF21237.1    PNF28332.1    PNF37782.1    PNF42792.1    PNF42884.1    NEVH01015309    PNF27009.1    NEVH01013215    PNF29703.1    NEVH01022636    PNF18588.1    PNF37787.1    NEVH01005906    PNF38146.1    NEVH01020940    PNF20478.1    NEVH01023953    PNF17877.1    NEVH01019075    PNF22938.1    NEVH01005889    PNF38332.1    NEVH01016335    NEVH01006721    PNF25462.1    PNF37115.1    NEVH01011186    PNF32183.1    NEVH01024428    NEVH01017533    NEVH01016946    NEVH01015820    NEVH01015300    NEVH01013960    NEVH01010478    NEVH01010477    NEVH01005894    NEVH01003749    NEVH01003737    NEVH01000598    PNF17088.1    PNF24133.1    PNF25000.1    PNF26655.1    PNF27272.1    PNF28247.1    PNF32492.1    PNF32520.1    PNF37274.1    PNF38220.1    PNF40102.1    PNF40402.1    PNF43530.1    NEVH01002700    PNF41535.1    NEVH01020850    PNF21258.1    PNF37211.1    NEVH01013563    PNF28562.1    NEVH01003500    PNF40666.1    PNF37310.1    BDOT01000008    GCF42705.1    NEVH01021921    PNF19488.1    NEVH01013553    PNF28765.1    NEVH01013959    PNF28275.1    NEVH01019077    PNF22889.1    BDOT01000105    GCF51450.1    NEVH01017460    PNF24248.1    KF881087    AIJ27486.1    NEVH01014359    PNF27813.1    AFYH01119920    GCF44732.1    NEVH01020937    PNF20581.1    NEVH01021219    PNF19787.1    NEVH01005277    PNF39212.1   

Proteomes

UP000218220    UP000036403    UP000007110    UP000271974    UP000288954    UP000285301    + More
UP000235965    UP000247801    UP000008672   

PRIDE

D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF00168   C2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR030431   FAM189       
IPR035892   C2_domain_sf       
IPR000008   C2_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     2.60.40.150    

ProteinModelPortal

D5LB38   A0A2A4JBK9   A0A0J7KZE8   A0A2S2QAF2   W4Y5A2   A0A3S0ZV17   + More
A0A402F2Z0   A0A402EB12   A0A2H6KKM9   A0A402E768   A0A402EKB1   A0A402EKC4   A0A402EWU2   A0A402F9C1   A0A402F9A7   A0A402ET28   A0A402E7Q0   A0A443QYR6   A0A402ECS2   A0A402EBP1   A0A402E7R7   A0A2S2PMS6   A0A402EWP9   A0A402FC20   A0A2J7R2D1   A0A402EWI9   A0A402ET04   A0A402F125   A0A402EWN2   A0A2J7PHX9   A0A402EBC2   A0A402F3F3   A0A402EVG7   A0A402EST4   A0A402EKM3   A0A2J7RNM5   A0A2J7RLC6   A0A2V9X8L4   A0A2J7QMH0   A0A402F4E6   A0A2J7R639   A0A2J7R3B7   A0A2J7R7D2   A0A2J7PJ38   A0A2J7QLX7   A0A402F406   A0A402FAG4   A0A2J7RLG7   A0A2J7RRE4   A0A2J7PZN7   A0A2J7R4W1   A0A2J7QNQ3   A0A2J7PJ03   A0A2J7R696   A0A2J7QSZ5   A0A2J7QQQ3   A0A2J7RBL5   A0A2J7PBF1   A0A2J7RBL1   A0A2J7PF68   A0A2J7QCG2   A0A2J7Q649   A0A2J7PC89   A0A2J7RPX5   A0A2J7QEJ0   A0A2J7QMC5   A0A2J7PQH3   A0A2J7RAC6   A0A2J7RBD8   A0A2J7PVW0   A0A2J7PNH4   A0A2J7Q2Y3   A0A2J7RBX3   A0A2J7R8G1   A0A2J7QUD0   A0A2J7R8W8   A0A2J7RL19   A0A2J7PY33   A0A2J7R8P5   A0A2J7QJ13   A0A2J7RIL8   A0A2J7R901   A0A402EEU1   A0A2J7PT27   A0A2J7QJJ9   A0A2J7QI56   A0A2J7Q2T8   A0A402F575   A0A2J7Q6P7   A0A076N1B6   A0A2J7QGX8   H3B2Y3   A0A402EKK1   A0A2J7PW81   A0A2J7PTY0   A0A2J7REE7  

PDB

5HHL     E-value=2.00796e-05,     Score=116

KEGG

NA   

GO

GO:0003964   GO:0004519  

PANTHER

PTHR17615  

Length:

584

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.3938

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00381

outside

1  -  584

 

 

Pi

13.161156

Theta

20.139835

Tajima's D

-0.979787

CLR

55.34816

CSRT

0.137293135343233

Interpretation

Uncertain