Gene

KWMTBOMO08123

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr13(+):16685412-16688214      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.864

CDS

ATGTGTTCAATTAGAATAAAAGGTAAATTTCAAAACTACACAATTATTAACGTACATGCCCCAACGGAGGAAAGCGCCCCAGAAGAGAAAGAGAAGTGGTACTATAATGTGGAAAGTGTGTACTCTAAAGCGCCCAAAGGTGACGTTAAGGTAATAATAGGAGATCTAAATGCGAAAATTGGCCGAGAAGAGGTATACTGTCCAACAATTGGACTACATAGTCTCCACGAAACCTCCAATGATAACGGCACCCGACTTATTGACCTTGCTTCATCTTTGAATATGGCTATTGGAAGTACATGTTTTCCGCACAAAAACATACACAAAGTTACTTGGTTTTCCGCTGACGGGGTTACCCGTAACCAAATTGACCATATTTTGATTGACCGTAGATATTACTCAAACCTCCTGGACGTTAGGAGCCACAGAGGTGCCAACATAGATTCGGACCACTATTTAGTCGTTTGCAAAATGAGGGCAAGAATATCGCAATACAAGTACACCAAGACTGTTAGGACAAGAAAGTTTGACACCTCAAAGTTAAAGCGACGGCCAGGGGTGAACTCTGAGTACATTGAGTGTGTGGGCCAAGAACTGGATAAGATAACAGATAATAGAAATAGTAATGTAGATTCTGATGAAATATGGCAACGCCTGAAATCTGCAGTTACAACAGCAGCTACGAAAGTTCTTGGACACGAAGAAAAGCGAAAACGGAATGGGTGGTTCGACGATGAATGCCAAAAAGTCACAGATGCGAAGAATAAGGCTCATAAATTATTGCAGCAAAAACTCACTCGGTGCCGTAGAGAGAATTACAGAAACCTTAGGATTAAAGAAAAACAGCTACACAAAAGGAAGAAACGAATGTTTGAAGAGCAACAACTTAAGGAAATTGCAAATAGTTACTCAAAGCAGGAATCCAGGATTTTCTACAAGCAAGTGAATAGCGGAAAGAAGGAATTTAAACCAAGAACCTCAGCCTGTAGAAATAAAGATGGCCAACTGCTTAATGACAGAACAGAAGTCATTAAAAGGTGGGCAGAACACTTCCAAGAGCTACTAAACAAACCATCAGTTGCTACTCATATCGATGAAGTCGAAGCTCCACTTAATCATCAGTGGCTAGAAGTGTCCCAACCGTCTCTGGAAGACACCAGAGCTGCCAGCCAAAAACTCAAAAACAATAAAGCTCCAGGAAACGACAACATCCAGAGTGAACTGCTGAAATACGCTGGGTCCCAGTTTGAAGAGGAATTCCATAAACTAGTACTGCAGATATGGAATTCTGAAGTTATGCCTGAGGAATGGAACACAGCGGTTATTTGTCCTCTCCACAAGAAGGGCGATGTTCTCGACTGTCAGAACTATCGAGGCATTTCACTCCTCAATACAGCATATAAGATATTTGCGAACGTTCTCTTTGGCAAATTAAAACCTTTCGTGGAGCCTAGACTAGGAGAATATCAGTGTGGTTTCCGACCTGGTAGATCAACCATCGACCAAATCTTCTCCCTACGACAAATACTTGAAAAAACTCTTGAATTTAATGCTGATACGTATCACCTTTTTATTGATTTTAAAGCTGCCTACGACAACATAAGCCGTGATTTCCTATACCAGGCTATGCATGAGATTGGCGTACCACCGAAGCTTATATCTTTAACAAGGATGACACTGGTTGCATCGCAAAGCATTGTTAAGATCCAAACAGACCTATCGGATCCTTTTAGAACCCATGATGGACTAAGGCAGGGTGATGCCCTCTCCTGCCTTCTTTTCAATGTTGCACTCGACAAGTGTATCCGTGACTCAGCAATAGAGACGACGGGCAATATATATTACAAATCCGCTCAAGTACTGGGATATGCGGATGATATTGACGTCATTGGCAGATCAGCTCTCGCAGTAGAAAGTGCGTACCTTGCTCTCGAGGCCTCGTCTCTCGAAGCCGGTCTCCAAGTAAACGCAGACAAAACTAAATTCCTGAGGGTGTCGAGGGACTTACGTGAGGACACAGCGCATAAAAATATTGGCCAGCATACTTTTGGATCTGTGAATGAATTTGTATATCTTGGTTCTCTGATAACGAATAATAATAATATAACAGCAGAAATAGTTAAGAGAATACTGTCGGCGAATAAATGCTACTTCGGCCTGCTTAAATATTTCTGTTCCAAAATTCTGTCACGAAATATCAAAATTATTTTATACAAGACCCTACTGAGGCCCATTCTTATTTATGGCTCAGAGACATGGGTACTCAGCAAAAAAGATGAGAACCGTCTACTTGTGTTCGAGCGTAAGATTCTAAGACGGATATTCGGTGCTGTGCGGGAAAACGAGATATGGAGGACGCGCTATAACCACGAGTTGTATGATGTTTACAAAGATCCTAACATCATAACAACTATAAAGATTGGACGCCTACGATGGGCAGGACATGTGGTTCGAATGGAGAGTACCAGAATGCCAAGACAATTGCTCTATGGCAAACCAGAGGGCCGCAGAAGTCGTGGCAGACCCAAACTTCGATGGTTGGATGGCGTGGAGCGCGACCTCAAAAATATCGGCGTCAAGAACTGGAAGGAGAAAGCCCTGAACAGAGCAGTCTGGAGAAACATACTGGACCAGGCTAAGGCCCACCCTGGGCTGTAA

Protein

MCSIRIKGKFQNYTIINVHAPTEESAPEEKEKWYYNVESVYSKAPKGDVKVIIGDLNAKIGREEVYCPTIGLHSLHETSNDNGTRLIDLASSLNMAIGSTCFPHKNIHKVTWFSADGVTRNQIDHILIDRRYYSNLLDVRSHRGANIDSDHYLVVCKMRARISQYKYTKTVRTRKFDTSKLKRRPGVNSEYIECVGQELDKITDNRNSNVDSDEIWQRLKSAVTTAATKVLGHEEKRKRNGWFDDECQKVTDAKNKAHKLLQQKLTRCRRENYRNLRIKEKQLHKRKKRMFEEQQLKEIANSYSKQESRIFYKQVNSGKKEFKPRTSACRNKDGQLLNDRTEVIKRWAEHFQELLNKPSVATHIDEVEAPLNHQWLEVSQPSLEDTRAASQKLKNNKAPGNDNIQSELLKYAGSQFEEEFHKLVLQIWNSEVMPEEWNTAVICPLHKKGDVLDCQNYRGISLLNTAYKIFANVLFGKLKPFVEPRLGEYQCGFRPGRSTIDQIFSLRQILEKTLEFNADTYHLFIDFKAAYDNISRDFLYQAMHEIGVPPKLISLTRMTLVASQSIVKIQTDLSDPFRTHDGLRQGDALSCLLFNVALDKCIRDSAIETTGNIYYKSAQVLGYADDIDVIGRSALAVESAYLALEASSLEAGLQVNADKTKFLRVSRDLREDTAHKNIGQHTFGSVNEFVYLGSLITNNNNITAEIVKRILSANKCYFGLLKYFCSKILSRNIKIILYKTLLRPILIYGSETWVLSKKDENRLLVFERKILRRIFGAVRENEIWRTRYNHELYDVYKDPNIITTIKIGRLRWAGHVVRMESTRMPRQLLYGKPEGRRSRGRPKLRWLDGVERDLKNIGVKNWKEKALNRAVWRNILDQAKAHPGL

Uniprot

D7F170   A0A023F0H0   A0A023F0F3   A0A2P8YGI5   A0A2P8ZAY7   A0A023EZ18   + More
A0A2M4CRR0   A0A2M4CRT4   A0A2M4ACI4   A0A0K8SN56   A0A2M4A2X8   A0A2M4A809   A0A2M4A3H0   A0A0V0G8V1   A0A023F0M0   T1E1T8   A0A023EX67   A0A0N8NZU6   A0A0U4HM41   A0A0J7KMY2   A0A1B0DRK3   A0A0P9A604   A0A0P8ZWR4   A0A069DWW0   A0A0P8Y0P3   A0A146KNZ7   A0A0P8XIG1   A0A0P9AMX6   A0A0V0G616   A0A0P8Y7V9   A0A0P9AAF4   A0A0P9BSL5   A0A0P8XDM7   A0A0P8XJ08   A0A023EWL3   A0A0R3Q7D3   A0A023EZ68   A0A0Q9WVM4   A0A023EXX8   A0A2P8YTB7   A0A0P8Y3A6   A0A2P8Z0K7   A0A2P8Z488   A0A1B0CNV0   A0A2P8ZLT6   A0A2P8YWA2   A0A2P8XC08   A0A060Q6A2   A0A023EWM1   A0A2P8Y2S1   A0A2P8ZFZ0   A0A2P8Z313   J9KHI9   A0A2S2NQ16   J9KNQ8   A0A2M4A3Y0   A0A2M4A3Z2   A0A2S2P2F5   A0A2S2PT92   J9L6X2   A0A2L2YFD0   A0A2P8YYC9   A0A2P8YFW0   J9LFP1   A0A2P8YLY7   A0A2P8ZCA4   A0A0K8TRS6   X1WTQ9   A0A0P8YCI9   A0A2P8ZIH1   A0A0P8Y4M6   J9LWM8   A0A0P8Y6K1   A0A0P8Y5F3   A0A2P8Z3H5   A0A3L8DEM2   A0A2P8XRQ1   A0A0A9WI21   J9L287   A0A1W7R6Q7   A0A2P8XT91   A0A224XC86   A0A2P8XT58   A0A069DWU6   A0A069DWR4   A0A2S2NUR1   J9L5U1   A0A1Y1LRT6   J9KH77   A0A2P8YPE1   X1WT72   J9LV02  

Pubmed

20470440    25474469    29403074    24330624    24945155    17994087    + More
25527032    26334808    26823975    18057021    26561354    26369729    30249741    25401762    28004739   

EMBL

FJ265555    ADI61823.1    GBBI01004263    JAC14449.1    GBBI01004261    JAC14451.1    + More
PYGN01000613    PSN43351.1    PYGN01000119    PSN53667.1    GBBI01004262    JAC14450.1    GGFL01003846    MBW68024.1    GGFL01003845    MBW68023.1    GGFK01005184    MBW38505.1    GBRD01011073    JAG54751.1    GGFK01001798    MBW35119.1    GGFK01003613    MBW36934.1    GGFK01001949    MBW35270.1    GECL01001585    JAP04539.1    GBBI01004198    JAC14514.1    GALA01001775    JAA93077.1    GAPW01000107    JAC13491.1    CH902657    KPU75308.1    KU311054    ALX81665.1    LBMM01005351    KMQ91586.1    AJVK01001578    CH902621    KPU81727.1    CH902626    KPU79149.1    GBGD01000331    JAC88558.1    CH902628    KPU75346.1    GDHC01021627    JAP97001.1    CH902666    KPU74610.1    CH902618    KPU79125.1    GECL01002632    JAP03492.1    CH902630    KPU77522.1    CH902622    CH902619    KPU75266.1    KPU77326.1    CH902633    KPU74667.1    CH902623    KPU72899.1    CH902627    KPU74872.1    GAPW01000120    JAC13478.1    UZAG01001147    VDO10529.1    GBBI01004199    JAC14513.1    CH963259    KRF97428.1    GAPW01000199    JAC13399.1    PYGN01000372    PSN47498.1    CH902714    KPU81861.1    PYGN01000254    PSN50032.1    PYGN01000203    PSN51319.1    AJWK01020943    PYGN01000020    PSN57453.1    PYGN01000324    PSN48495.1    PYGN01003402    PSN29545.1    HE799691    CCH14900.1    GAPW01000151    JAC13447.1    PYGN01001004    PSN38555.1    PYGN01000070    PSN55417.1    PYGN01000219    PSN50892.1    ABLF02019047    ABLF02019049    GGMR01006433    MBY19052.1    ABLF02039015    GGFK01002192    MBW35513.1    GGFK01002196    MBW35517.1    GGMR01010991    MBY23610.1    GGMR01020071    MBY32690.1    ABLF02018097    ABLF02043469    ABLF02056908    IAAA01017079    LAA06070.1    PYGN01000287    PSN49259.1    PYGN01000629    PSN43121.1    ABLF02066124    PYGN01000502    PSN45243.1    PYGN01000107    PSN54137.1    GDAI01000742    JAI16861.1    ABLF02035454    ABLF02035459    ABLF02035461    ABLF02042121    KPU79150.1    PYGN01000047    PSN56294.1    KPU76535.1    ABLF02042851    CH902653    KPU74858.1    CH904714    KPU81814.1    PYGN01000212    PSN51056.1    QOIP01000009    RLU18885.1    PYGN01001465    PSN34679.1    GBHO01037471    GBRD01009355    GBRD01009354    GDHC01014856    GDHC01007898    JAG06133.1    JAG56469.1    JAQ03773.1    JAQ10731.1    ABLF02027703    ABLF02061609    GEHC01000890    JAV46755.1    PYGN01001382    PSN35227.1    GFTR01007842    JAW08584.1    PYGN01001388    PSN35187.1    GBGD01000583    JAC88306.1    GBGD01000559    JAC88330.1    GGMR01008290    MBY20909.1    ABLF02017638    ABLF02041349    GEZM01048836    JAV76363.1    ABLF02018925    PYGN01000451    PSN46127.1    ABLF02020712    ABLF02020717    ABLF02054820    ABLF02012660   

Proteomes

UP000245037    UP000007801    UP000036403    UP000092462    UP000050602    UP000007798    + More
UP000092461    UP000007819    UP000279307   

PRIDE

D7F170   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF14529   Exo_endo_phos_2
PF13359   DDE_Tnp_4
PF05699   Dimer_Tnp_hAT

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR027806   HARBI1_dom       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F170   A0A023F0H0   A0A023F0F3   A0A2P8YGI5   A0A2P8ZAY7   A0A023EZ18   + More
A0A2M4CRR0   A0A2M4CRT4   A0A2M4ACI4   A0A0K8SN56   A0A2M4A2X8   A0A2M4A809   A0A2M4A3H0   A0A0V0G8V1   A0A023F0M0   T1E1T8   A0A023EX67   A0A0N8NZU6   A0A0U4HM41   A0A0J7KMY2   A0A1B0DRK3   A0A0P9A604   A0A0P8ZWR4   A0A069DWW0   A0A0P8Y0P3   A0A146KNZ7   A0A0P8XIG1   A0A0P9AMX6   A0A0V0G616   A0A0P8Y7V9   A0A0P9AAF4   A0A0P9BSL5   A0A0P8XDM7   A0A0P8XJ08   A0A023EWL3   A0A0R3Q7D3   A0A023EZ68   A0A0Q9WVM4   A0A023EXX8   A0A2P8YTB7   A0A0P8Y3A6   A0A2P8Z0K7   A0A2P8Z488   A0A1B0CNV0   A0A2P8ZLT6   A0A2P8YWA2   A0A2P8XC08   A0A060Q6A2   A0A023EWM1   A0A2P8Y2S1   A0A2P8ZFZ0   A0A2P8Z313   J9KHI9   A0A2S2NQ16   J9KNQ8   A0A2M4A3Y0   A0A2M4A3Z2   A0A2S2P2F5   A0A2S2PT92   J9L6X2   A0A2L2YFD0   A0A2P8YYC9   A0A2P8YFW0   J9LFP1   A0A2P8YLY7   A0A2P8ZCA4   A0A0K8TRS6   X1WTQ9   A0A0P8YCI9   A0A2P8ZIH1   A0A0P8Y4M6   J9LWM8   A0A0P8Y6K1   A0A0P8Y5F3   A0A2P8Z3H5   A0A3L8DEM2   A0A2P8XRQ1   A0A0A9WI21   J9L287   A0A1W7R6Q7   A0A2P8XT91   A0A224XC86   A0A2P8XT58   A0A069DWU6   A0A069DWR4   A0A2S2NUR1   J9L5U1   A0A1Y1LRT6   J9KH77   A0A2P8YPE1   X1WT72   J9LV02  

PDB

6AR3     E-value=0.000201196,     Score=110

KEGG

101744029    no KO assigned | (RefSeq) nascent polypeptide-associated complex subunit alpha, muscle-specific form

GO

GO:0003964   GO:0004519   GO:0006355   GO:0046983  

Length:

885

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00504

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00010

outside

1  -  885

 

 

Pi

2.117153

Theta

16.455132

Tajima's D

-1.019825

CLR

5.671903

CSRT

0.130893455327234

Interpretation

Uncertain