Gene

KWMTBOMO08106  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001060

Annotation

PREDICTED:_clathrin_light_chain_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr13(+):16018667-16021886      View in EpiBrowser

Full name

Clathrin light chain      

Location in the cell

Nuclear   Reliability : 2.832

CDS

ATGGATGATTTTGGAGACAGTTTCGTTGAACCTGAGGTCGATCCAGCAGCAGATTTCCTTGCCCGTGAGCAGAATCAGCTAGCAGGTCTCGAAGACGAGCTAGAAACCAGTGCTCCGCCCCCTGCCATTTCGACGTCTACAAACGGGTTTGACGATTTTGTCGAAGTACCCAGTGCATCAGCATTTGATGCTAACGGTCTGTTGGATGATGCTCCATTGGGATCCACTCCAACAACAGTATTCAAACAAGAACGTGAGGAACCTGAGAAGATCAAAATATGGCGAGAAGAACAAAAGAAAAGATTAGAAGAGAAAGATGCTGAGGAAGAACAAAAGAAGCAAGAAATGCTTCAGATAGCCAAGAAAGAACTGGAGGACTGGTACAAATCACATGAAGAACAGATTTCCAAAACTAAAGCTGCCAACAGGAATGCAGAGCGAGCACAAGCTCGAGGATCTGAAAGTAGTGTGGAGGAAGGAAATGAATGGGCCCGGGTTTCTGAGCTTTGTGACTTTGGACCCCGTCGAGGAAGGGATGTGGCACGCTTACGGTCAATTGTGCTTCAGCTCAAGCAAGCTGGATCTCGCCCAAACTACCCATCACGTGCTACTAAAGTGGCTTGA

Protein

MDDFGDSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQEREEPEKIKIWREEQKKRLEEKDAEEEQKKQEMLQIAKKELEDWYKSHEEQISKTKAANRNAERAQARGSESSVEEGNEWARVSELCDFGPRRGRDVARLRSIVLQLKQAGSRPNYPSRATKVA

Description

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Similarity

Belongs to the clathrin light chain family.

Feature

chain  Clathrin light chain

Uniprot

H9IUY0   A0A437BPC8   A0A2H1WW70   A0A194Q676   A0A194RJU4   A0A212ETN4   + More
A0A0K8SKS0   S4P0T7   A0A2H8TLI3   A0A2R7W589   A0A1B6IS15   J9JNX3   A0A1B6HY46   A0A182J8Y5   A0A1B6KXH6   A0A2J7Q0V5   A0A182MS01   A0A2M4BZ23   A0A1B6GGA9   A0A2J7Q0T4   A0A1B6FKZ0   A0A084WI05   A0A1B6CY03   A0A1B6DH24   A0A182MYG7   A0A182QN79   A0A1B6L7V0   D2A370   A0A182W2H3   A0A2J7Q0W0   A0A1B6DED4   A0A2M4BZJ0   A0A1B6EHE2   A0A2M4BYR6   A0A2A3EP62   A0A0J7L519   V9IJP7   A0A1L8DVL6   A0A154PDY8   A0A1D2NAD0   U4TZQ8   A0A182JWS6   Q17MN3   A0A087ZRM7   A0A2M3Z2H7   A0A1S4EXA6   A0A1B6JD89   A0A2M3Z290   Q5TSE5   E2AFM5   Q17MN2   A0A1S4H5B2   E2BX92   A0A1S4EXA9   A0A1B6FXF3   A0A2J7Q0U6   U5EX03   A0A0A9Z1P1   A0A224XWU5   A0A069DQ27   A0A182XPC5   V5IAG2   A0A182R7U4   Q17MN1   A0A1B6FQ20   A0A067RB65   A0A310SVA7   A0A182UGR1   A0A1Q3FFB0   A0A2J7Q0V2   A0A2M4AAA5   A0A2M4A9X3   A0A0K8SK48   A0A1B0CWD4   N6TEG6   A0A182H9W7   A0A2M4CQC9   A0A0P4VWL3   R4G431   A0A1Q3FFL4   W5JFW9   A0A182VFS5   E0V906   A0A0K8TPH1   J3JZH7   A0A0L7R5X8   T1DGU7   A0A1Q3FFA3   A0A1Q3FFE9   A0A182FV28   G0ZJ15   A0A2J7Q0X3   A0A1Q3FFL1   A0A411G7S4   A0A026WTS0   A0A2P8YL81   A0A182HFN4   A0A0P4X0T3  

Pubmed

19121390    30441758    26354079    22118469    23622113    24438588    + More
18362917    19820115    27289101    23537049    17510324    12364791    20798317    25401762    26823975    26334808    24845553    26483478    27129103    20920257    23761445    20566863    26369729    22516182    21396955    24508170    29403074   

EMBL

BABH01000168    RSAL01000023    RVE52266.1    MK060106    ODYU01011528    AZG02840.1    + More
SOQ57319.1    KQ459439    KPJ01038.1    KQ460297    KPJ16221.1    AGBW02012542    OWR44850.1    GBRD01011897    JAG53927.1    GAIX01012795    JAA79765.1    GFXV01003190    MBW14995.1    KK854299    PTY14341.1    GECU01017982    JAS89724.1    ABLF02036507    GECU01028132    JAS79574.1    GEBQ01023814    JAT16163.1    NEVH01019960    PNF22211.1    AXCM01004073    GGFJ01009196    MBW58337.1    GECZ01027235    GECZ01008426    JAS42534.1    JAS61343.1    PNF22212.1    GECZ01028054    GECZ01018893    JAS41715.1    JAS50876.1    ATLV01023900    KE525347    KFB49849.1    GEDC01019017    JAS18281.1    GEDC01012314    JAS24984.1    AXCN02001045    GEBQ01020373    JAT19604.1    KQ971338    EFA02270.2    PNF22214.1    GEDC01013343    JAS23955.1    GGFJ01009007    MBW58148.1    GECZ01032427    GECZ01026295    JAS37342.1    JAS43474.1    GGFJ01009011    MBW58152.1    KZ288202    PBC33507.1    LBMM01000695    KMQ97721.1    JR047888    AEY60534.1    GFDF01003618    JAV10466.1    KQ434886    KZC10099.1    LJIJ01000127    ODN02035.1    KB631708    ERL85518.1    CH477204    EAT47990.1    GGFM01001942    MBW22693.1    GECU01010618    JAS97088.1    GGFM01001870    MBW22621.1    AAAB01008933    EAL40365.3    GL439118    EFN67776.1    EAT47991.1    GL451230    EFN79675.1    GECZ01016962    GECZ01014903    JAS52807.1    JAS54866.1    PNF22222.1    GANO01001185    JAB58686.1    GBHO01005808    GBRD01009231    GDHC01013039    JAG37796.1    JAG56590.1    JAQ05590.1    GFTR01003456    JAW12970.1    GBGD01002949    JAC85940.1    GALX01001240    JAB67226.1    EAT47989.1    GECZ01017520    JAS52249.1    KK852761    KDR17007.1    KQ759874    OAD62363.1    GFDL01008815    JAV26230.1    PNF22218.1    GGFK01004395    MBW37716.1    GGFK01004283    MBW37604.1    GBRD01012143    GDHC01013145    JAG53681.1    JAQ05484.1    AJWK01032246    AJWK01032247    APGK01032287    APGK01032288    KB740838    ENN78764.1    JXUM01121475    JXUM01121476    JXUM01121477    JXUM01121478    KQ566504    KXJ70075.1    GGFL01003213    MBW67391.1    GDKW01001504    JAI55091.1    GAHY01001700    JAA75810.1    GFDL01008706    JAV26339.1    ADMH02001513    ETN62238.1    DS234988    EEB09862.1    GDAI01001349    JAI16254.1    BT128659    AEE63616.1    KQ414648    KOC66171.1    GAMD01002631    JAA98959.1    GFDL01008811    JAV26234.1    GFDL01008813    JAV26232.1    JF284465    AEL23012.2    PNF22216.1    GFDL01008707    JAV26338.1    MH366153    QBB01962.1    KK107109    EZA59056.1    PYGN01000515    PSN45007.1    APCN01005544    GDRN01036539    JAI67341.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000053240    UP000007151    UP000007819    + More
UP000075880    UP000235965    UP000075883    UP000030765    UP000075884    UP000075886    UP000007266    UP000075920    UP000242457    UP000036403    UP000076502    UP000094527    UP000030742    UP000075881    UP000008820    UP000005203    UP000007062    UP000000311    UP000008237    UP000076407    UP000075900    UP000027135    UP000075902    UP000092461    UP000019118    UP000069940    UP000249989    UP000000673    UP000075903    UP000009046    UP000053825    UP000069272    UP000053097    UP000245037    UP000075840   

PRIDE

H9IUY0   

Pfam

PF01086   Clathrin_lg_ch        + More
PF00226   DnaJ
PF05207   zf-CSL

Interpro

IPR000996   Clathrin_L-chain        + More
IPR001623   DnaJ_domain       
IPR036869   J_dom_sf       
IPR036671   Znf_DHP_sf       
IPR007872   Znf_DHP       

SUPFAM

SSF46565   SSF46565        + More
SSF144217   SSF144217       

Gene 3D

1.10.287.110     3.10.660.10    

CDD

cd06257  DnaJ

ProteinModelPortal

H9IUY0   A0A437BPC8   A0A2H1WW70   A0A194Q676   A0A194RJU4   A0A212ETN4   + More
A0A0K8SKS0   S4P0T7   A0A2H8TLI3   A0A2R7W589   A0A1B6IS15   J9JNX3   A0A1B6HY46   A0A182J8Y5   A0A1B6KXH6   A0A2J7Q0V5   A0A182MS01   A0A2M4BZ23   A0A1B6GGA9   A0A2J7Q0T4   A0A1B6FKZ0   A0A084WI05   A0A1B6CY03   A0A1B6DH24   A0A182MYG7   A0A182QN79   A0A1B6L7V0   D2A370   A0A182W2H3   A0A2J7Q0W0   A0A1B6DED4   A0A2M4BZJ0   A0A1B6EHE2   A0A2M4BYR6   A0A2A3EP62   A0A0J7L519   V9IJP7   A0A1L8DVL6   A0A154PDY8   A0A1D2NAD0   U4TZQ8   A0A182JWS6   Q17MN3   A0A087ZRM7   A0A2M3Z2H7   A0A1S4EXA6   A0A1B6JD89   A0A2M3Z290   Q5TSE5   E2AFM5   Q17MN2   A0A1S4H5B2   E2BX92   A0A1S4EXA9   A0A1B6FXF3   A0A2J7Q0U6   U5EX03   A0A0A9Z1P1   A0A224XWU5   A0A069DQ27   A0A182XPC5   V5IAG2   A0A182R7U4   Q17MN1   A0A1B6FQ20   A0A067RB65   A0A310SVA7   A0A182UGR1   A0A1Q3FFB0   A0A2J7Q0V2   A0A2M4AAA5   A0A2M4A9X3   A0A0K8SK48   A0A1B0CWD4   N6TEG6   A0A182H9W7   A0A2M4CQC9   A0A0P4VWL3   R4G431   A0A1Q3FFL4   W5JFW9   A0A182VFS5   E0V906   A0A0K8TPH1   J3JZH7   A0A0L7R5X8   T1DGU7   A0A1Q3FFA3   A0A1Q3FFE9   A0A182FV28   G0ZJ15   A0A2J7Q0X3   A0A1Q3FFL1   A0A411G7S4   A0A026WTS0   A0A2P8YL81   A0A182HFN4   A0A0P4X0T3  

PDB

3LVH     E-value=0.00622149,     Score=90

KEGG

101736808    no KO assigned | (RefSeq) clathrin light chain

GO

GO:0030130   GO:0005198   GO:0016192   GO:0006886   GO:0030132   GO:0072583   GO:0048268   GO:0030125   GO:0005886   GO:0099631   GO:0032050   GO:0030672   GO:0046872   GO:0015914   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR10639  

Subcellular location

Membrane   Cytoplasmic face of coated pits and vesicles.   With evidence from 2 publications.
Coated pit   Cytoplasmic face of coated pits and vesicles.   With evidence from 2 publications.
Cytoplasmic vesicle membrane   Cytoplasmic face of coated pits and vesicles.   With evidence from 2 publications.

Length:

207

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02372

outside

1  -  207

 

 

Pi

24.326405

Theta

27.168952

Tajima's D

-0.346967

CLR

1.286938

CSRT

0.289285535723214

Interpretation

Uncertain