Silkworm Genome Informatics Database

Gene

KWMTBOMO08104

Pre Gene Modal

BGIBMGA001059

Annotation

Protein_Cep78-like_[Papilio_machaon]

Location

Bomo_Chr13(+):16003337-16012443 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.032

CDS

ATGGTCGGCAAAGGTGTCGAACCGAAGAGCAGCCGTATATTCCAACAGTGTTATGCTAAATGTTGCAAACTACAAAATTTTACGCCCCTAAACAATGTGCTGCCAACCGGGAATGGAAAAATATTGGATTTCTGCGTCGATAGAATTAAGTATGCTGATTGGCCGCCGATACTGAACGCTTTGAGCTGTGATTTAAGTCTGCATTCTATTTCTATACGATGCAGGCAGCCTGTGAAAACTGTACTCGAACAAATCGACTGCGATCGACTAGCAAAAACTGTAAACAAACGAGCTGTGATTTTAACCAATTTTATGCTGAATAATCTCGTCGAAGCGATATCCCAACTCTTGTCCAATACGACCCTATTGACTTCATTGCTGGTAGAAGGATTGCCGTTGAAGATCCCCTATTTGAATCCTTTATGTGAGGCGGTCCTTTTAAACAGTTCCCTCCAACACTTGTACTTCCAACGATGCTTGCTCGGAGATGCGGGATGTTTGGCAATCTGCAAAGCGGTCCGATGTCTGCCGAACGTCCTGACTTTAGACTTGTCAGGTTGCGAACTGACTATGCTTGGAGCTAGTTATATAGCTGAATTAGTTAAGTACCAAAAGATCCATCGATACAGCGAGAACTGGATCCATACATTACGTTATCGTCTCCCTGATCTCGATACGATGGCTGGCCTGAGACGTATCACCCTTTGTGGGAACACTCAGTTGGGTGACGCTGGACTCACCAAGCTATTGGAGGTCTTGGCTGATGATTTGTGGATCAAAGCACTAGACGTCCAAAACTGCGGTCTGACAGAAGCAACAGCAACGGCTACATTGAACATGATGCGATCGAACACTACCCTCGTCGTCTTGGACTTGAGGCATAATTCTGAGATCTCTATCGAGTCGCTATCCAAGGTTAGGTCTGCACTCAGAGCTAACGAAAGAGGAACGGCAGGACAGTATTCATGGCTGGGAAATGTTAGCGGTTGCTCAAATGATGGAAGAATTAAAACTGTCGTCAAAAATGGAGCTGTCAAAGACAGAGGAACGATAACGAAAAACGCGCCATCGAAATACCTAGCAAAGAGTAGCGTCGTCAAAAAAGAAAAAGATTACACAGAAGTACTCGAAGAACAGCTTCAAGAAGAGATATCGCATCGGCAGCAACTCGAGGAGTTGAATCTACAACTAGTAGATCAAATGAAGCAGTTGAAACAGCAGCAGATCAAGTTGTGGGCGAATGGGGCCATGTCGTCAGGTTCAGAACAGTCATTCCAAGCGAGTTCGCGTTCGGGTGATTATTCAAGCAGTTCTGGTTCTTCGAGCTCGATTCCGATCGACCAGAACACGCTGTCCTACATTCAGCAGGCCTTTAAGGATATATATGAATTTATCAAGAATAATCAGTGTCACGGACAATGCCTCGTTGACACGGCAAATGATAACAATGTCGAAGAAACAATTGTCAATGAGGCCACCGAAGCTGAAATGCACGGATACAGTGAACTTCGCGCCAATATTGTAGCGAAGAAAGCACAAAGCACGCACGTCAAAATGCTCACGAATGCCAAGATGACAAAGAAAATGACCAAGTCTGCGCATTTGTTGGGCGATGTACCAGGATCTCAGAGATCTAGGGACGTTGAAATGAAACCAGAAATGATCGAAAAGCAAATGGGCGACACTAGAACTTTGAACGAAGAACGTTGCTACGACGACATGAGAACGAAGACAAAGAAGGTATTGTCAAATTCTTTTTTGGATGTATATTTGACTGAGGCTTTTCATATTAAGCTTGTGACACAGCGGTATCAGGCGTGCGTCTCGTGTATAAGTTATGCGTTCGAGACAATACATATATACTTTGCTTTATCCCACATAAAATTTTAA

Protein

MVGKGVEPKSSRIFQQCYAKCCKLQNFTPLNNVLPTGNGKILDFCVDRIKYADWPPILNALSCDLSLHSISIRCRQPVKTVLEQIDCDRLAKTVNKRAVILTNFMLNNLVEAISQLLSNTTLLTSLLVEGLPLKIPYLNPLCEAVLLNSSLQHLYFQRCLLGDAGCLAICKAVRCLPNVLTLDLSGCELTMLGASYIAELVKYQKIHRYSENWIHTLRYRLPDLDTMAGLRRITLCGNTQLGDAGLTKLLEVLADDLWIKALDVQNCGLTEATATATLNMMRSNTTLVVLDLRHNSEISIESLSKVRSALRANERGTAGQYSWLGNVSGCSNDGRIKTVVKNGAVKDRGTITKNAPSKYLAKSSVVKKEKDYTEVLEEQLQEEISHRQQLEELNLQLVDQMKQLKQQQIKLWANGAMSSGSEQSFQASSRSGDYSSSSGSSSSIPIDQNTLSYIQQAFKDIYEFIKNNQCHGQCLVDTANDNNVEETIVNEATEAEMHGYSELRANIVAKKAQSTHVKMLTNAKMTKKMTKSAHLLGDVPGSQRSRDVEMKPEMIEKQMGDTRTLNEERCYDDMRTKTKKVLSNSFLDVYLTEAFHIKLVTQRYQACVSCISYAFETIHIYFALSHIKF

Uniprot

A0A3S2LF03 A0A212ETM9 A0A2H1WW87 A0A194RFI4 A0A194QC73 A0A2A4JXW7 + More
A0A2A4JW90

Pubmed

22118469 26354079

EMBL

RSAL01000023 RVE52264.1 AGBW02012542 OWR44848.1 ODYU01011528 SOQ57321.1 + More
KQ460297 KPJ16219.1 KQ459439 KPJ01036.1 NWSH01000457 PCG76270.1 PCG76271.1

Proteomes

UP000283053 UP000007151 UP000053240 UP000053268 UP000218220

Pfam

PF13516 LRR_6

Interpro

IPR026212   Cep78        + More
IPR032675   LRR_dom_sf
IPR001611   Leu-rich_rpt
IPR006553   Leu-rich_rpt_Cys-con_subtyp

Gene 3D

3.80.10.10

ProteinModelPortal

A0A3S2LF03 A0A212ETM9 A0A2H1WW87 A0A194RFI4 A0A194QC73 A0A2A4JXW7 + More
A0A2A4JW90

PDB

2BNH E-value=0.000266646, Score=107

KEGG

NA

GO

GO:0005515 GO:0006629 GO:0005840 GO:0006412 GO:0015934 GO:0015914 GO:0046872 GO:0016876 GO:0043039

Length:

629

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.54175

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.00687

outside

1 - 629

Pi

15.958195

Theta

16.61088

Tajima's D

-0.475747

CLR

1.924597

CSRT

0.249287535623219

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics