SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08099
Pre Gene Modal
BGIBMGA001054
Annotation
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_46_isoform_X1_[Bombyx_mori]
Full name
Ubiquitin carboxyl-terminal hydrolase 46       + More
Ubiquitin carboxyl-terminal hydrolase 12      
Ubiquitin carboxyl-terminal hydrolase 12A      
Ubiquitin carboxyl-terminal hydrolase 12-A      
Ubiquitin carboxyl-terminal hydrolase 12-B      
Ubiquitin carboxyl-terminal hydrolase 4      
Ubiquitin carboxyl-terminal hydrolase 3      
Palmitoyltransferase      
Probable ubiquitin carboxyl-terminal hydrolase creB      
Alternative Name
Deubiquitinating enzyme 46
Ubiquitin thioesterase 46
Ubiquitin-specific-processing protease 46
Deubiquitinating enzyme 12
Ubiquitin thioesterase 12
Ubiquitin-hydrolyzing enzyme 1
Ubiquitin-specific-processing protease 12
Deubiquitinating enzyme 12A
Ubiquitin thioesterase 12A
Ubiquitin-specific-processing protease 12A
Deubiquitinating enzyme 12-A
Ubiquitin thioesterase 12-A
Ubiquitin-specific-processing protease 12-A
Deubiquitinating enzyme 12-B
Ubiquitin thioesterase 12-B
Ubiquitin-specific-processing protease 12-B
Deubiquitinating enzyme
Ubiquitin thioesterase
Ubiquitin-specific-processing protease
Deubiquitinating enzyme 4
Ubiquitin thioesterase 4
Ubiquitin-specific-processing protease 4
Deubiquitinating enzyme 3
Ubiquitin thioesterase 3
Ubiquitin-specific-processing protease 3
Carbon catabolite repression protein B
Deubiquitinating enzyme creB
Ubiquitin thioesterase creB
Ubiquitin-hydrolyzing enzyme creB
Ubiquitin-specific-processing protease creB
Location in the cell
Nuclear   Reliability : 3.525
 

Sequence

CDS
ATGTCAATATGTCAGGATTTTGGCCTTAATTTCCAGCATAGAATGGGCGCAAATATATCACAGTTGGAAAGAGATATCGGGTCAGAGCAGTTCCCACCTAACGAACATTATTTCGGATTAGTCAATTTTGGCAACACTTGTTACAGCAACTCAGTGTTGCAAGCTTTATATTTTTGTCGCCCATTCAGAGAGAAAGTATTAGAGTACAAAGCTAAGAATAAAAGGACCAAGGAAACTCTATTAACATGCCTGGCAGATTTATTTTATAGCATAGCTACTCAAAAGAAAAAAGTTGGATCAATTGCACCTAAAAAATTTATTGCTAGACTTAGGAAGGAAAAGGAGGAATTTGACAATTACATGCAACAAGATGCCCATGAATTCCTGAACTTCCTAATAAATCATATTAATGAAATTATTTTAGCGGAACGTAATCAAAGCACATTAAAAGTTCAAAAGAACAACTCCGGTGAGAATGTGACGTGTAATGGTTCAGTGCCTCACAACACTGAACCGACTTGGGTGCACGAAATATTCCAAGGAACATTAACAAGCGAGACGAGGTGTCTCAACTGTGAGACGGTCAGCAGTAAAGATGAGCATTTCTTTGATTTACAGGTGGACGTGGGTCAAAACACGAGCATCACGCACTGCCTCAAGTGCTTCAGCGACACGGAGACGCTTTGCAACGACAACAAGTTCAAGTGTGACAACTGCAGCAGCTACCAGGAGGCGCAGAAGCGGATGCGCGTGAAGAAGCTTCCCCTCATCCTCGCCCTGCACCTCAAGAGGTTCAAATACATGGAACAGTTTAACCGGCACATCAAGGTGTCGCATCGCGTTGTGTTCCCATTAGAACTGAGATTATTTAATACGTCTGACGACGCTGTGAATCCGGATCGTCTGTACGACCTGGTGGCCGTGGTGGTGCACTGCGGCTCCGGCCCGAACCGGGGCCACTACATCAGCATCGTCAAGAGTCACGGCTTCTGGCTGCTGTTCGACGATGACATGGTTGATAAAATAGATGCATCAGCTATAGAAGACTTTTACGGCCTAACTTCAGACATACAGAAATCGTCCGAAACAGGATACATACTATTTTATCAGTCTAGGGACGCTAGTTGTTAA
Protein
MSICQDFGLNFQHRMGANISQLERDIGSEQFPPNEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKFKCDNCSSYQEAQKRMRVKKLPLILALHLKRFKYMEQFNRHIKVSHRVVFPLELRLFNTSDDAVNPDRLYDLVAVVVHCGSGPNRGHYISIVKSHGFWLLFDDDMVDKIDASAIEDFYGLTSDIQKSSETGYILFYQSRDASC

Summary

Description
Deubiquitinating enzyme that plays a role in behavior, possibly by regulating GABA action (By similarity). Has almost no deubiquitinating activity by itself and requires the interaction with wdr48 to have a high activity (By similarity).
Deubiquitinating enzyme that plays a role in behavior, possibly by regulating GABA action. May act by mediating the deubiquitination of GAD1/GAD67 (By similarity). Has almost no deubiquitinating activity by itself and requires the interaction with WDR48 to have a high activity. Not involved in deubiquitination of monoubiquitinated FANCD2 (By similarity).
Deubiquitinating enzyme that plays a role in behavior, possibly by regulating GABA action. May act by mediating the deubiquitination of GAD1/GAD67 (PubMed:19465912). Has almost no deubiquitinating activity by itself and requires the interaction with WDR48 to have a high activity. Not involved in deubiquitination of monoubiquitinated FANCD2 (By similarity).
Deubiquitinating enzyme that plays a role in behavior, possibly by regulating GABA action. May act by mediating the deubiquitination of GAD1/GAD67 (By similarity). Has almost no deubiquitinating activity by itself and requires the interaction with WDR48 to have a high activity (PubMed:19075014, PubMed:26388029). Not involved in deubiquitination of monoubiquitinated FANCD2 (PubMed:19075014).
Deubiquitinating enzyme. Has almost no deubiquitinating activity by itself and requires the interaction with WDR48 to have a high activity. Not involved in deubiquitination of monoubiquitinated FANCD2.
Deubiquitinating enzyme. Has almost no deubiquitinating activity by itself and requires the interaction with WDR20 and WDR48 to have a high activity (PubMed:19075014, PubMed:27373336). Not involved in deubiquitination of monoubiquitinated FANCD2 (PubMed:19075014). In complex with WDR48, acts as a potential tumor suppressor by positively regulating PHLPP1 stability (PubMed:24145035).
Deubiquitinating enzyme. Has almost no deubiquitinating activity by itself and requires the interaction with wdr48 to have a high activity.
Regulates the abundance of the glr-1 glutamate receptor in the ventral nerve cord by promoting its deubiquitination and preventing its degradation in the lysosome. Contributes to the regulation of embryonic polarity.
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Required for the correct development of pollen.
Ubiquitin thioesterase component of the regulatory network controlling carbon source utilization through ubiquitination and deubiquitination involving creA, creB, creC, creD and acrB. Deubiquitinates the creA catabolic repressor and the quinate permease qutD. Plays also a role in response to carbon starvation and the control of extracellular proteases activity (By similarity).
Catalytic Activity
Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
hexadecanoyl-CoA + L-cysteinyl-[protein] = CoA + S-hexadecanoyl-L-cysteinyl-[protein]
Subunit
Interacts with WDR48.
Interacts with WDR48. Interacts with WDR20.
Interacts with WDR48 (PubMed:19075014, PubMed:26388029). Interacts with WDR20 (PubMed:20147737).
Interacts with WDR48. Interacts with WDR20. Component of the USP12/WDR20/WDR48 deubiquitinating complex.
Interacts with WDR48 (PubMed:19075014, PubMed:27650958, PubMed:27373336). Interacts with WDR20 (PubMed:20147737, PubMed:27373336). Component of the USP12/WDR20/WDR48 deubiquitinating complex (PubMed:20147737, PubMed:27373336). Interacts with PHLPP1 (PubMed:24145035).
Interacts with wdr-20 and wdr-48; the catalytic activity of usp-46 is increased in the presence of both wdr-20 and wdr-48. Interacts with glr-1; the interaction results in deubiquitination of glr-1.
Interacts with creA, creC and qutD.
Miscellaneous
Knockdown of USP12 increases Akt activation.
Similarity
Belongs to the peptidase C19 family. USP12/USP46 subfamily.
Belongs to the peptidase C19 family.
Belongs to the DHHC palmitoyltransferase family.
Keywords
Behavior   Complete proteome   Hydrolase   Metal-binding   Protease   Reference proteome   Thiol protease   Ubl conjugation pathway   Zinc   Alternative splicing   3D-structure   Polymorphism   Cytoplasm   Lipoprotein   Myristate   Nucleus   Coiled coil  
Feature
chain  Ubiquitin carboxyl-terminal hydrolase 46
splice variant  In isoform 2.
sequence variant  In dbSNP:rs17475800.
EC Number
3.4.19.12
2.3.1.225
EMBL
CT827859    GU455413    AABR07072397    AC114452    ADV57650.1    CR858584    + More
CR858606    AK145298    BC039916    GU455414    AK022614    AK024318    AK296493    AK299883    AK302438    CH471057    BC037574    AK006739    AK035629    AK167153    BC049274    BC055398    BC068136    AF441835    BT030596    AF022789    AK289685    AL158062    AL355473    CH471075    BC026072    BC115286    BC094130    BC087530    BT044911    BT059552    Z29095    U76846    AC007168    CP002685    AY048261    AY072625    AY087731    U76845    AL035708    AL161596    CP002687    AY058889    AY079044    LLXK01000160    PKY16949.1    QKKE01000224    RGB33822.1    BDIQ01000067    AUPC02000034    GBC23597.1    POG78215.1    LLXJ01000091    LLXH01000206    PKC15367.1    PKC70685.1    KK207915    EZF48942.1    GL882890    EGF77996.1    MSZS01000001    PKX98674.1    KV424657    KZV64218.1    DS547091    EDR15274.1    KL198006    KDQ31360.1    JH971385    EKM83950.1    NHYE01005668    PPQ64280.1    KN831961    KIO06970.1    BN001304    CBF79002.1    LXFE01000603    OLL24819.1    KV417501    KZP28893.1    KQ962072    KXN90105.1    LUGH01000052    OBZ90357.1    LLXL01000022    PKK80130.1    CDGI01000810    CEJ02685.1    KZ151540    OUM56960.1    BEXD01004073    GBC06426.1    CCYT01000580    CEG83784.1    KZ819605    PWN32411.1    CEJ02683.1    CEJ02684.1    PJQL01000191    RCH98522.1    CCYT01000013    CEG69609.1    PJQL01002201    RCH85032.1    NBII01000002    PAV22641.1    CH476741    EIE87684.1    KE124014    EPB85328.1    NHTK01005754    PPQ74417.1    MCGE01000016    ORZ13725.1    CEG83783.1    LK023357    CDS12439.1    KV921438    ORE15118.1    CR382129    CAG82386.1    KV700153    OCF30351.1    EQ966262    EED83732.1    LN733222    CEP16668.1    MCGE01000003    ORZ23182.1    CBTN010000077    CDH59889.1    AEIJ01000476    GL541699    KDE04770.1    MCGN01000006    ORY95321.1    FJUW01000008    CZS94450.1    AJIL01000061    KNE98063.1    KN881675    KIY50480.1    KN840541    KIP05525.1    LLXI01000011    PKY37830.1    LN679119    CEL56060.1    KV922005    ORE03397.1    JATN01000289    EUC67048.1    LAVV01009790    KNZ49979.1    HG529615    CDI54449.1    RBNK01001468    RUS19216.1    JH658470    EXK79473.1    ANFO01000734    KGQ07043.1    KV425900    KZW00495.1    GL636488    EFW20689.1    AMGY01000009    EXJ78362.1    BEXD01001817    GBB95876.1    QKRW01000002    RAL67842.1    DS990636    EGC41364.1    GG692419    EER45423.1    QWIN01000007    RMY62737.1    PYWC01000111    PWW72274.1    CH476615    EEP75776.1    LYCR01000027    OGM46912.1    KZ107843    OSS49774.1    KV407454    KZF26009.1    KL197710    KDQ62992.1    QWIQ01000293    RMY96198.1    MCFG01000425    ORX68440.1    QKRW01000001    RAL68428.1    CH476597    JZDT01000752    KOC16469.1    FP929127    CBX95574.1    AMWN01000004    EXJ88307.1    LUGG01000034    OBZ66035.1    JZEE01000622    KJK62453.1    ML120565    RPA89611.1    AP007150    LT854253    SMR41623.1    AKHY01000215    EIT72488.1   
Pfam
PF00443   UCH        + More
PF08174   Anillin
PF01979   Amidohydro_1
PF00780   CNH
PF15405   PH_5
PF00069   Pkinase
PF03473   MOSC
PF03476   MOSC_N
PF01425   Amidase
PF13230   GATase_4
PF12022   DUF3510
PF06148   COG2
PF00503   G-alpha
PF00618   RasGEF_N
PF00617   RasGEF
PF02518   HATPase_c
PF00072   Response_reg
PF13185   GAF_2
PF13191   AAA_16
PF00512   HisKA
PF00722   Glyco_hydro_16
PF07690   MFS_1
PF00887   ACBP
PF01529   DHHC
Interpro
IPR001394   Peptidase_C19_UCH        + More
IPR018200   USP_CS       
IPR038765   Papain-like_cys_pep_sf       
IPR028889   USP_dom       
IPR034261   CNOT4_RRM       
IPR013083   Znf_RING/FYVE/PHD       
IPR039515   NOT4_mRING-HC-C4C4       
IPR003954   RRM_dom_euk       
IPR035979   RBD_domain_sf       
IPR001841   Znf_RING       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR039780   Mot2       
IPR012966   AHD       
IPR032466   Metal_Hydrolase       
IPR011059   Metal-dep_hydrolase_composite       
IPR006680   Amidohydro-rel       
IPR001180   CNH_dom       
IPR001849   PH_domain       
IPR011993   PH-like_dom_sf       
IPR041675   PH_5       
IPR000719   Prot_kinase_dom       
IPR011009   Kinase-like_dom_sf       
IPR005303   MOSC_N       
IPR005302   MoCF_Sase_C       
IPR023631   Amidase_dom       
IPR000120   Amidase       
IPR036928   AS_sf       
IPR026869   Put_GATase_2       
IPR029055   Ntn_hydrolases_N       
IPR017932   GATase_2_dom       
IPR024602   COG_su2_N       
IPR024603   COG_complex_COG2_C       
IPR009316   COG2       
IPR027417   P-loop_NTPase       
IPR011025   GproteinA_insert       
IPR001019   Gprotein_alpha_su       
IPR001895   RASGEF_cat_dom       
IPR036964   RASGEF_cat_dom_sf       
IPR008937   Ras-like_GEF       
IPR023578   Ras_GEF_dom_sf       
IPR000651   Ras-like_Gua-exchang_fac_N       
IPR004358   Sig_transdc_His_kin-like_C       
IPR003594   HATPase_C       
IPR036097   HisK_dim/P_sf       
IPR001789   Sig_transdc_resp-reg_receiver       
IPR036890   HATPase_C_sf       
IPR041664   AAA_16       
IPR003661   HisK_dim/P       
IPR029016   GAF-like_dom_sf       
IPR011006   CheY-like_superfamily       
IPR003018   GAF       
IPR005467   His_kinase_dom       
IPR013320   ConA-like_dom_sf       
IPR000757   GH16       
IPR011701   MFS       
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       
IPR000582   Acyl-CoA-binding_protein       
IPR035984   Acyl-CoA-binding_sf       
IPR014352   FERM/acyl-CoA-bd_prot_sf       
IPR001594   Palmitoyltrfase_DHHC       
SUPFAM
SSF54001   SSF54001        + More
SSF54928   SSF54928       
SSF51556   SSF51556       
SSF56112   SSF56112       
SSF75304   SSF75304       
SSF56235   SSF56235       
SSF52540   SSF52540       
SSF47895   SSF47895       
SSF48366   SSF48366       
SSF52172   SSF52172       
SSF55874   SSF55874       
SSF47384   SSF47384       
SSF49899   SSF49899       
SSF103473   SSF103473       
SSF47027   SSF47027       
PDB
5L8W     E-value=1.48795e-153,     Score=1392

Ontologies

Topology

Subcellular location
Perikaryon  
Cytoplasm  
Nucleus  
Length:
376
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0320500000000001
Exp number, first 60 AAs:
0.02854
Total prob of N-in:
0.00623
outside
1  -  376
 
 

Population Genetic Test Statistics

Pi
2.438376
Theta
21.269544
Tajima's D
-0.849459
CLR
2.031511
CSRT
0.165641717914104
Interpretation
Uncertain
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