SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08096
Pre Gene Modal
BGIBMGA007029
Annotation
PREDICTED:_uncharacterized_protein_LOC105842764?_partial_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.647 Nuclear   Reliability : 1.662
 

Sequence

CDS
ATGGTGAACACTCGAAGTGATAACCGTGCTAGCCGAAATCGCAGGGATGATGATGCAACGGACCCATCGTCTGTCCGCGTCCCGCGATCGGTCTCCCCGAGCGCGTCCGCCGCCCAAGAAAATGGCGCCGGCGACGCCTCGCGCATAATCTACGAGGCCTTTCGAGAAGCATCTACGAGCGCGTCTCCCGCCTGCGAAATCGGCGCTGCTGACGCCTCGCGCTCCAATCACCACAACCGATCCGACGACAGCCACGTGGCCCCCGCCGAAGCCACCTTCTCCAGCGAGCACGTGTCAACAATAGTAGAGGCACTACGCGGAGCCAAACAGAGTGGGGCTGCAGGCGAGTCGCTTGATGCCTTCCTGGATGCGGCCGAGGCCTATCGCGACTGCTCCGACATCTCGGATGAGAACGCCGTCCGGGGATTGTCCATGCTGTTGTGCGGCGACGCTGCCGTCTGGTGGCTGGGTGTGAAGTCCTCCATATCTTCGTGGTGCGATGCCGTATCAGCCCTACGAGACGCTTTCGGTGATCGCAGACCTCCACACCGTATATACGCTCAACTATTCAAACGAGGTCAACAAAACGACGAAAGAACGGACCGTTTCATCGCTGCGACGCGCGCTCTTCTCGCGAAGCTACCTGCCGGCGACCTAAGCGAGAAAGTCCAGCTGGACATGATCTACGGACTCCTCAGCCGCCGCGTACGGGAAAGACTTCGCCGCGACGAAGTAAGTTCATTCGACGTGCTCCTGCAAAGAGCGCGCCAAATTGAAGACGCGACGGACGAACTTCGCTACGAGCACGACGCCTCAAAGCCGACGGGAGAATTGGCAAGAAAACCATACGAGTCGACGACCGGCACCGGACGCAGCCGCCCTCCGCCAGCAACCGCAGCGCGCACGGCCGCGTGCGCTCCGAGCGGCGCCGCCCCCGGCCACGAGCCCGCGACGCAGCCGCCGCTTGCTCCCGGAACGCCGCGTGTATTTGACTCCGTCGAAAGGAAGCGACGCCCGAAATGTTCGTATTGCCATTTCTTCGGTCACGAGAAGAACCAGTGTCAGGATTCAAATTTTGTTCATGAAAGATGTCCGGGCGACAGTAAGATTTGTATACCATTATTTGAAAATTATTGTGATAAAAACGGGATAAACCCGAATTTTCCGAAATATGGGAATAAGCGTGATGTAATGGGATTTGATTGTTTTTATGGTTGCGGCGGAGATGATGATCTTACGGGACCCCCTATTGGTCGTGACGTTCGGCCGATTTTCAACATAAATATACTGGGTTTTGACGGCACCGCTTTAATAGACATAGCTGCAAAACACTGCATCGCGGGTCATACGCTATACGCTCTCCTCCAGCAGAACAACCATCCTCTCCGCGTTTCCTCTCAACGAGTCGGACTTGCCGACGGTGTGGTGCGCATTATGGACGTTTTTACCACCACACTCGATGTACGCCTAGAGACGACAATTATTTCCACTCCATTCCTCATATTTCCTGAATCCACCAATAATGAAACGTTATTAGGAATAGATTTTATTACCGCAGCTGGAGTAGTAATCGACTTCAAAGAAGAGGTTTGGTTCTTCAGTGATGATGCGATGGTAAAGTATAATCTATGTTTCGAACCTAAGTCGCGCAAAGTTTCCTGCGCCGCTATAGACATCCTTAGGGATGACGAAGGTACTCACCTTACGCCAGCTGAGCGGCAAGCGCTCGCTGACGTACTGGACAGGCACGCACACATTTTCAGAGCAGGGGGAGGTCCAACACCGTTTACTGAGCATCGCATCGAAAAAGGAGCGAGGGCGTTCTCCAGGACTAGAGGGGGAGTATATAGCAACCCTAACGCCTGCCGCATCGGCTCCCTCCGCATTATCGTCGGGGCCGGGCAGTACGTCAGAAATGACGTTATTGCCCGGGACCTAGGTGTGGAGTCGCTCGTGGAGTTTGTGACTAGGCTCGCCCGTAATATGTACGAGCGAGCCGAAAACGGGCCCCATGAGCATCTCCACAACATAGCCCCGCTGCACGCCAGACCACCGGATGGAGAGCAGCAGCCGCCCCCGGAAGAAGGGAAGAAAGAAGAAGAAGAAGGAAGAAAGAAGAAAGAAGAAGGAAGAAAGAAGATGAAGAAATGA
Protein
MVNTRSDNRASRNRRDDDATDPSSVRVPRSVSPSASAAQENGAGDASRIIYEAFREASTSASPACEIGAADASRSNHHNRSDDSHVAPAEATFSSEHVSTIVEALRGAKQSGAAGESLDAFLDAAEAYRDCSDISDENAVRGLSMLLCGDAAVWWLGVKSSISSWCDAVSALRDAFGDRRPPHRIYAQLFKRGQQNDERTDRFIAATRALLAKLPAGDLSEKVQLDMIYGLLSRRVRERLRRDEVSSFDVLLQRARQIEDATDELRYEHDASKPTGELARKPYESTTGTGRSRPPPATAARTAACAPSGAAPGHEPATQPPLAPGTPRVFDSVERKRRPKCSYCHFFGHEKNQCQDSNFVHERCPGDSKICIPLFENYCDKNGINPNFPKYGNKRDVMGFDCFYGCGGDDDLTGPPIGRDVRPIFNINILGFDGTALIDIAAKHCIAGHTLYALLQQNNHPLRVSSQRVGLADGVVRIMDVFTTTLDVRLETTIISTPFLIFPESTNNETLLGIDFITAAGVVIDFKEEVWFFSDDAMVKYNLCFEPKSRKVSCAAIDILRDDEGTHLTPAERQALADVLDRHAHIFRAGGGPTPFTEHRIEKGARAFSRTRGGVYSNPNACRIGSLRIIVGAGQYVRNDVIARDLGVESLVEFVTRLARNMYERAENGPHEHLHNIAPLHARPPDGEQQPPPEEGKKEEEEGRKKKEEGRKKMKK

Summary

Pfam
PF17921   Integrase_H2C2        + More
PF00665   rve
PF00078   RVT_1
PF17917   RT_RNaseH
PF00077   RVP
Interpro
IPR021109   Peptidase_aspartic_dom_sf        + More
IPR001878   Znf_CCHC       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR000477   RT_dom       
IPR041373   RT_RNaseH       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR001969   Aspartic_peptidase_AS       
IPR018061   Retropepsins       
SUPFAM
SSF50630   SSF50630        + More
SSF53098   SSF53098       
Gene 3D

Ontologies

Topology

Length:
716
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.10967
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00973
outside
1  -  716
 
 

Population Genetic Test Statistics

Pi
6.674027
Theta
24.578163
Tajima's D
-2.026787
CLR
21.183188
CSRT
0.0114994250287486
Interpretation
Uncertain
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