SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08088
Annotation
endonuclease-reverse_transcriptase_HmRTE-e01_[Danaus_plexippus]
Location in the cell
Nuclear   Reliability : 2.032
 

Sequence

CDS
ATGCGAATGTTGCGATGGATGTGTGGAGTAATGAGAATTGATAGAATACGGAATGAATATGCTAGAGGCAGTCTAAAAGTGGCACCTGTGACAGAGAAGCTGAGAAGTGCGCGTTTGGGATGGTATGGACATGTGATGAGACGAAATGAAAATGAGGTTGGTGAGAGAGTGTTAACTATGAATGTGGAAGGATATAGAGAAAAAGGTCGACCTAAGAAGAAATGGATAGATTGCGTGAAAGCCGATATAGATAAGAGGGGAGTGAGCGATGAAATGGTATATGATAGAAGAGTATGGGAGGAGAAAACATGTTGCGCCGACCCCAGGGGACTGGGAGAAGGACAGGATAATGATGATGATGATGCTTGCGTTTATAGATATCACGGGTAA
Protein
MRMLRWMCGVMRIDRIRNEYARGSLKVAPVTEKLRSARLGWYGHVMRRNENEVGERVLTMNVEGYREKGRPKKKWIDCVKADIDKRGVSDEMVYDRRVWEEKTCCADPRGLGEGQDNDDDDACVYRYHG

Summary

EMBL
NWSH01001232    PCG72026.1    KZ150002    PZC75290.1    NWSH01004369    PCG65177.1    + More
KZ150032    PZC74715.1    KZ150034    PZC74657.1    KN768094    KIH47114.1    AFYH01208402    UZAH01029847    VDP08183.1    JARK01000107    EYC42998.1    UZAH01031291    VDP14793.1    UZAH01004968    VDO28364.1    JARK01001491    EYB95904.1    UZAH01027307    VDO90480.1    UZAH01032715    VDP23439.1    JARK01001494    JARK01001424    EYB95586.1    EYC04409.1    JARK01001507    JARK01001392    JARK01001372    EYB94492.1    EYC10272.1    EYC15469.1    JARK01001348    EYC24955.1    JARK01001567    EYB89507.1    JARK01001430    EYC03360.1    UZAH01043455    VDP63277.1    JARK01000211    EYC40482.1    UYSL01023630    VDL82448.1    EYC03359.1    UZAH01027944    VDO96393.1    AFYH01190171    UZAH01030740    VDP11902.1    UZAH01036784    VDP47042.1    UZAH01001522    VDO19785.1    UZAH01025623    VDO67507.1    JARK01001383    EYC12479.1    UZAH01036764    VDP46995.1    JARK01001382    EYC12609.1    JARK01001428    EYC03715.1    UZAH01001784    VDO19994.1    JARK01001340    EYC31495.1    UZAH01025600    VDO67005.1    JARK01000005    EYC46180.1    UZAH01030101    VDP09262.1    JARK01001678    EYB83113.1    JARK01001350    EYC23938.1    EYC46181.1    UZAH01027842    VDO95476.1    UZAH01029058    VDP04025.1    JARK01001702    EYB82127.1    UYSL01023169    VDL81812.1    JARK01000539    EYC36061.1    LIAE01010387    PAV62045.1    UZAH01035701    VDP42189.1    JARK01001524    EYB92930.1    AFYH01256541    JARK01001472    EYB97834.1    EYC10247.1    JARK01001415    EYC05905.1    UZAH01036580    VDP46188.1    UZAH01027446    VDO91691.1    UZAH01041723    VDP60601.1    AHAT01020685    UZAH01036021    VDP43600.1    JARK01001582    EYB88451.1    UZAH01041841    VDP60735.1    UZAH01038994    VDP55126.1    KZ350014    PIO64310.1    JARK01000337    EYC38175.1    JARK01001437    EYC02289.1    UZAH01031410    VDP15327.1    UZAH01031395    VDP15256.1    UYSL01001919    VDL65558.1    JARK01001341    EYC30277.1    UYSL01023141    VDL81764.1    JARK01001601    EYB87296.1    EYB88469.1   
Pfam
PF00078   RVT_1        + More
PF03372   Exo_endo_phos
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR027124   Swc5/CFDP2       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

GO

Topology

Length:
129
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00021
Exp number, first 60 AAs:
0.00021
Total prob of N-in:
0.30135
outside
1  -  129
 
 

Population Genetic Test Statistics

Pi
23.657148
Theta
19.16214
Tajima's D
0.780853
CLR
0.33991
CSRT
0.5997200139993
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号