Silkworm Genome Informatics Database

Gene

KWMTBOMO08083 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001048

Annotation

hypothetical_protein_KGM_22461_[Danaus_plexippus]

Location

Bomo_Chr13(+):15171520-15172844 View in EpiBrowser

Location in the cell

Extracellular Reliability : 2.086

CDS

ATGTGCGTGTCGCAGGTGGAGCGCTCGCACCCGTGCTGGGGCGGCGGGCGGTGCGGCGGCGCGGCGTCGTGCGGCGCGGGCGGCGCGTGCGGCTGCGGCGTGCGCTGTCCCGCGGCGCCGCCCGTGTGCCCGCCCTCGCACCTGCTGTGCGACGCGCACGCCTCCCGCCCGCAGTGTCTGCCCGTCGAATGGAAATGTGACGGGCAACAAGACTGCGAGGACGGGCGCGACGAGGCGGAGTGCGGCGCGTGCGGCGGCGACGTGCGCTGCGCCGACGGCACGTGCGCGCCCGCGCTGTCGGCGTGCGCGGCCGGCGCGCTCTGCGCCAACCCGCCGCCGCCCGACGCCTTCAGGTGA

Protein

MCVSQVERSHPCWGGGRCGGAASCGAGGACGCGVRCPAAPPVCPPSHLLCDAHASRPQCLPVEWKCDGQQDCEDGRDEAECGACGGDVRCADGTCAPALSACAAGALCANPPPPDAFR

Uniprot

A0A2W1C4L5

Pubmed

28756777

EMBL

KZ149891 PZC79083.1

Pfam

PF00057 Ldl_recept_a + More
PF00058 Ldl_recept_b

Interpro

IPR036055   LDL_receptor-like_sf        + More
IPR002172   LDrepeatLR_classA_rpt
IPR001881   EGF-like_Ca-bd_dom
IPR000033   LDLR_classB_rpt
IPR011042   6-blade_b-propeller_TolB-like
IPR000742   EGF-like_dom
IPR013032   EGF-like_CS
IPR023415   LDLR_class-A_CS

SUPFAM

SSF57424 SSF57424

Gene 3D

2.120.10.30 4.10.400.10

CDD

cd00112 LDLa

ProteinModelPortal

A0A2W1C4L5

PDB

5B4X E-value=0.000229912, Score=99

KEGG

NA

GO

GO:0016021 GO:0005509 GO:0005515 GO:0003676 GO:0005840 GO:0006412 GO:0015934 GO:0015914 GO:0046872 GO:0016876 GO:0043039

Length:

118

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02327

Exp number, first 60 AAs:

0.01805

Total prob of N-in:

0.37880

outside

1 - 118

Pi

15.417288

Theta

14.438241

Tajima's D

-0.854223

CLR

0.012664

CSRT

0.169041547922604

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics