Gene

KWMTBOMO08074

Pre Gene Modal

BGIBMGA001045

Annotation

PREDICTED:_hemicentin-1-like_[Bombyx_mori]

Location

Bomo_Chr13(+):14480310-14501115      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.787 PlasmaMembrane   Reliability : 1.514

CDS

ATGATTGGAGCTGCTCTCCAAGAACCGACGAAGGTTATCTGCGAGGTGGACGCATATCCTCCACCGAACACTTTCGAATGGACATTGAACAGTTCTGCTGGATCCATCAGGGTTGATGCTGAACGTTTCACGGTGGAAGTAAAGGAGGGTCGTTCAGTATTAACTTACATGCCGGTGTCGGACGTCGACTATGGCACGTTGTCGTGCCGCGCGACGAACTTGGCTGGACAGCAGCCGATGCCGTGCCTCTACACTTTATTACCGGCGACGCGTCCCGATCAGCCAACTAACTGCACTGTTTACAACCTCACCGACGACTCTCTGGACCTCGCCTGTATTGCTGGATACGAAGGAGGTCTACGTTGTGTTTACGTATTAGAAGTCTGGACCAACGAGGGTCTGTTGGTGAACGTGAGTAATGGTGCTGCCTTATGGAACCTAAGAAGATTGGGAGCAGCAAGACTTTTGCGTTTGGTTGTATATGCCGCGAATTCTAGAGGGAGGTCCGAGCACGTCTCATTCACTGTTGAAACTGCACCGAGATTAGCTCCAAGGACGGAAGCGCAAGCGGCATGGGAAGTGAACTGGGCTGTCGGCGGTGCTTTGTGCTTCATCACGGTGATCGGTGTGATTGTCTGTCTCGCAATGACCGTTTTCAAATTGAGAAATAGAGCAAGAGACTACGAAGTCACCATACCTTCATTAAAGAACCAAAAGGTATTACCGCCAAAGAGGAACTCTCCTCACGGGCAAGACGACAGAAATCCAGACATCATTCCACTAAGCAAAGGACTGGCAGGATGTCCGCCCGATCCGCCTATGTATTCGGCGGTGACGTCATCAGACCCAAAGAACTCGAACAGCGCCCACAGTTTGTCTCGCACGCTATCACCGACCACGCCGGCTTCGTCGCACGCTCAATACGCTGACACGCAGAGTGAATCAAGTCGAAACGGAGCGAACGGAGTTTTGAGATCTCACAGAGAAGTCGTGACAACGAGAACGCCTCTACTCGCGGCGCATCAAGAAAGCTGTGTTTAA

Protein

MIGAALQEPTKVICEVDAYPPPNTFEWTLNSSAGSIRVDAERFTVEVKEGRSVLTYMPVSDVDYGTLSCRATNLAGQQPMPCLYTLLPATRPDQPTNCTVYNLTDDSLDLACIAGYEGGLRCVYVLEVWTNEGLLVNVSNGAALWNLRRLGAARLLRLVVYAANSRGRSEHVSFTVETAPRLAPRTEAQAAWEVNWAVGGALCFITVIGVIVCLAMTVFKLRNRARDYEVTIPSLKNQKVLPPKRNSPHGQDDRNPDIIPLSKGLAGCPPDPPMYSAVTSSDPKNSNSAHSLSRTLSPTTPASSHAQYADTQSESSRNGANGVLRSHREVVTTRTPLLAAHQESCV

Uniprot

H9IUW5   A0A2W1BFG7   A0A194Q659   A0A194RDG7   A0A0L7L6Y9   A0A437BPB1   + More
A0A2W1C0R4   A0A194QC59   A0A194RCY1   A0A212EPF2   A0A0L7L3B9   A0A1S3D0I8   D6WPK0   A0A2A3EAV1   A0A088AEQ8   A0A146LWV4   E2C6R5   N6TZI3   A0A182XU94   A0A0J7L1U4   A0A146L2A9   U4TXM8   A0A182KMA6   A0A1I8MX01   A0A0A9ZA85   A0A182II24   E1JII4   A0A1W4UT22   A4IJ60   A0A2R7WZ49   B5DVI0   W8AZH0   A0A0M5IZH3   A0A3B0KEL4   A0A0R1E7Z3   A0A1S4GDS9   B4GLE2   A0A0C9PXU9   A0A0C9R081   A0A0Q9WPR8   Q0KI85   B3NZK0   A0A154PQL6   A0A0C9QIG5   B3LZ81   B4PLG0   A0A3L8D540   A0A0T6BD88   B4HIF4   F4WYX2   Q7PUJ2   A0A158NCS0   A0A084VRP7   A0A2J7RMJ3   A0A1B6LVG0   A0A0M9ABL7   B4KAI7   A0A2P8ZKD3   A0A195F9V8   A0A0Q9X4G1   A0A067QS26   A0A026WZS6   A0A1D2N2H2   A0A0K8TH23   K7J3W1   E2AMX6   A0A195CEQ8   A0A146KUX4   A0A336LM08   A0A151HZS0   A0A195EAN5  

Pubmed

19121390    28756777    26354079    26227816    22118469    18362917    + More
19820115    26823975    20798317    23537049    20966253    25315136    25401762    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    15632085    17994087    24495485    17550304    12364791    30249741    21719571    21347285    24438588    29403074    24845553    24508170    27289101    20075255   

EMBL

BABH01000334    BABH01000335    BABH01000336    KZ150099    PZC73538.1    KQ459439    + More
KPJ01023.1    KQ460397    KPJ15325.1    JTDY01002605    KOB71114.1    RSAL01000023    RVE52253.1    KZ149891    PZC79087.1    KPJ01021.1    KPJ15324.1    AGBW02013464    OWR43372.1    JTDY01003187    KOB69998.1    KQ971354    EFA06209.2    KZ288301    PBC28857.1    GDHC01006501    JAQ12128.1    GL453161    EFN76377.1    APGK01045684    APGK01045685    APGK01045686    APGK01045687    APGK01045688    KB741037    ENN74695.1    LBMM01001360    KMQ96449.1    GDHC01016570    JAQ02059.1    KB631716    ERL85562.1    GBHO01004899    GBRD01005769    GDHC01012855    JAG38705.1    JAG60052.1    JAQ05774.1    APCN01002092    APCN01002093    AE014297    ACZ94883.1    BT030418    ABO52838.1    KK856079    PTY24802.1    CM000070    EDY68591.2    GAMC01016297    GAMC01016296    GAMC01016295    JAB90258.1    CP012526    ALC45674.1    OUUW01000007    SPP83491.1    CM000160    KRK03415.1    AAAB01008987    CH479185    EDW38366.1    GBYB01006328    JAG76095.1    GBYB01000378    GBYB01001375    JAG70145.1    JAG71142.1    CH940650    KRF83023.1    ABI31162.1    CH954181    EDV49573.1    KQ435007    KZC13410.1    GBYB01000377    JAG70144.1    CH902617    EDV43008.2    EDW96867.2    QOIP01000014    RLU14968.1    LJIG01001644    KRT85296.1    CH480815    EDW42669.1    GL888463    EGI60626.1    EAA01423.6    ADTU01011685    ADTU01011686    ADTU01011687    ADTU01011688    ADTU01011689    ADTU01011690    ADTU01011691    ADTU01011692    ADTU01011693    ADTU01011694    ATLV01015761    ATLV01015762    KE525036    KFB40641.1    NEVH01002554    PNF42039.1    GEBQ01012338    JAT27639.1    KQ435710    KOX79819.1    CH933806    EDW15700.2    PYGN01000030    PSN56957.1    KQ981727    KYN37161.1    CH964272    KRF99985.1    KK853725    KDQ90159.1    KK107061    EZA61348.1    LJIJ01000278    ODM99483.1    GBRD01012222    GBRD01001135    JAG64686.1    AAZX01000985    AAZX01008934    GL440966    EFN65212.1    KQ977873    KYM99185.1    GDHC01021667    GDHC01018531    JAP96961.1    JAQ00098.1    UFQS01000043    UFQT01000043    SSW98369.1    SSX18755.1    KQ976642    KYM78678.1    KQ979236    KYN22176.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000037510    UP000283053    UP000007151    + More
UP000079169    UP000007266    UP000242457    UP000005203    UP000008237    UP000019118    UP000076407    UP000036403    UP000030742    UP000075882    UP000095301    UP000075840    UP000000803    UP000192221    UP000001819    UP000092553    UP000268350    UP000002282    UP000008744    UP000008792    UP000008711    UP000076502    UP000007801    UP000279307    UP000001292    UP000007755    UP000007062    UP000005205    UP000030765    UP000235965    UP000053105    UP000009192    UP000245037    UP000078541    UP000007798    UP000027135    UP000053097    UP000094527    UP000002358    UP000000311    UP000078542    UP000078540    UP000078492   

PRIDE

H9IUW5    Q0KI85   

Pfam

PF08205   C2-set_2        + More
PF07686   V-set
PF00047   ig
PF00041   fn3
PF13895   Ig_2

Interpro

IPR036116   FN3_sf        + More
IPR013783   Ig-like_fold       
IPR007110   Ig-like_dom       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013162   CD80_C2-set       
IPR003599   Ig_sub       
IPR003961   FN3_dom       
IPR013106   Ig_V-set       
IPR013151   Immunoglobulin       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

H9IUW5   A0A2W1BFG7   A0A194Q659   A0A194RDG7   A0A0L7L6Y9   A0A437BPB1   + More
A0A2W1C0R4   A0A194QC59   A0A194RCY1   A0A212EPF2   A0A0L7L3B9   A0A1S3D0I8   D6WPK0   A0A2A3EAV1   A0A088AEQ8   A0A146LWV4   E2C6R5   N6TZI3   A0A182XU94   A0A0J7L1U4   A0A146L2A9   U4TXM8   A0A182KMA6   A0A1I8MX01   A0A0A9ZA85   A0A182II24   E1JII4   A0A1W4UT22   A4IJ60   A0A2R7WZ49   B5DVI0   W8AZH0   A0A0M5IZH3   A0A3B0KEL4   A0A0R1E7Z3   A0A1S4GDS9   B4GLE2   A0A0C9PXU9   A0A0C9R081   A0A0Q9WPR8   Q0KI85   B3NZK0   A0A154PQL6   A0A0C9QIG5   B3LZ81   B4PLG0   A0A3L8D540   A0A0T6BD88   B4HIF4   F4WYX2   Q7PUJ2   A0A158NCS0   A0A084VRP7   A0A2J7RMJ3   A0A1B6LVG0   A0A0M9ABL7   B4KAI7   A0A2P8ZKD3   A0A195F9V8   A0A0Q9X4G1   A0A067QS26   A0A026WZS6   A0A1D2N2H2   A0A0K8TH23   K7J3W1   E2AMX6   A0A195CEQ8   A0A146KUX4   A0A336LM08   A0A151HZS0   A0A195EAN5  

KEGG

101738258    no KO assigned | (RefSeq) hemicentin-1-like

GO

GO:0016021   GO:0005515   GO:0003676   GO:0005840   GO:0006412   GO:0015934   GO:0015914   GO:0046872   GO:0016876   GO:0043039  

Length:

346

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.93985

Exp number, first 60 AAs:

9e-05

Total prob of N-in:

0.19712

outside

1  -  195

TMhelix

196  -  218

inside

219  -  346

 

 

Pi

25.206608

Theta

22.851045

Tajima's D

0.549047

CLR

1.115685

CSRT

0.537223138843058

Interpretation

Uncertain