Gene

KWMTBOMO08073

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr13(-):14472449-14477379      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.401 Nuclear   Reliability : 1.965

CDS

ATGGAGTCCACGGTCGATCTCTTTGCAGAATTTCTTCGCCTTAGGTACCCAACGCTATCGGCAGAATTTTTAGAATTCAAGACCCATCACGCAGCGAACTCGCCGGCGGTCTCCGTCGCTCCCATCGCTCCTGCGTCGTCCATTGCGGCCTCCGTCACGCCCGCCGATCCTGTGTCCCCGATACTCGCGCCCAAAACTTCTGCGTCGACCGTTGCAGCTTCCGCCCCAACCGTGCGTTCGTCGGCGACCTACGTTGCTTCCGTGCGTTCGTCCACGGCCTCCGTCGTGTCTGCGTCGTCTACTGCGCCCGCTAAAACACCCACCCGCAGGTCGCCCGCGCCCTCCTCATCCGATTCAGAGTCGGACATGGAGGTCGACCCTTCCCCCGCCGCCACGACTGATGGATTCACAGTAGTCCAAAAAGGTAAAAAGCGTGCTGCGGAGGCCCGAGCTTCCGCGGCCGCTAAAGTAAGCAAAGCCGCGAACGCGTCGCGTCCCCGCCCTCCGACCCCCGTCGCTCCCGCTGTCCGTGCAACACCGTCGCCGCGTCCAGTGGCACAATCTAAAACTCAGACCCCTCCCCCGGTAATCCTTCAAGACAAGGCAGCTTGGGACCGAGTTTCCCTGGCCCTTAAGGCCAAAAATATTAATTTTGTCAGCGCCCGTAATCTCGCCAACGGGATTCAAATAAAAATAACGACACCCGACGACCATAGGGCCCTCTCAAGTTACCTCCGAAAGGAGCGTATAAGCTTCCACACTTATACGCTCCAGGAGGAGCGCGAACTCCGCGTTGTCATACGTGGAATTCCGAAGGAGCTAGATGCCGATCTCGTCAAGGCTGATCTGATAGAACAAGGCCTACCAGTAAATTCCGTGCACCGCATGCACACCGGCCGCGGTAGGGAGCCATACAATATGGTTCTAGTCGCCCTCCAGCCTACCCCCGAGGTGCAGGAGACCCTACTCAAGCCCGCGCGTCGCGACCCTAAAATCGCGAACTATAACATGGTTAGGAACGACAGGCTCACTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAACATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGTCACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCTCCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTACTCGGCATGGGAAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCTAATGGCAGGCGGCTCGACGCGTTAGTCGATGATCTCGCCTTCGATATCATCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCCGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATTGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCATTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATTAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAGCCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCGTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAGCAAGTTGTGGCGGAGGACTTCCTTCACCGCTTCAAATTGCCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATCCGCGCCTACGATAGGTATCCTACAGTGGAAAATCGTACTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCTCAAAGATCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTCGTAGCTATGCCCCCCCTCGTAGGCCCCTCAGGCCAACTCGCGGCGTTCGATGATGAAGAAAAAGCAGAGCTGCTGGCCGATACATTACAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAAAACGCAGAGCCTCCTTGCCACCCTCGGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAAGCTCCCGGTTCCGACGGTATATCTAACCGCGTTATTAAACTTCTACCCATCCAACTCATCGTGATGTTGGCATCTATCTTCAATGCCGCTATGGCTAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGAACGTTATCGGCATACACAAACCCGGTAAACCAAAAAATAATCCGACGAGTTACCGCCCGATTAGCCTCCTCATGTCTCTGGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCAAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTGCAAATCACTCATGCGTACAACAGGTGCACCGCCTCACGGAGCACATTCTCGTGGGACTTAACCGACCAAAACCGATCTACACGGGAGCCCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTTTTCAACATGGGCGTACCGGACAGTCTCGTGCTCATCATACGGGACTTCTTGTCTAACCGCTCTTTTCGATATCGAGTAGAGGGAACCCGCTCCTCCCCGCGACCACTCACGGCTGGAGTCCCGCAAGGCTCCGTTCTTTCTCCGCTCCTATTTAGTTTATTTGTCAATGATATTCCCCGGTCGCCGCCGACCCAGCTAGCCTTATTCGCTGACGACACAACCGTTTACTACTCAAGTAGAAACAAGTCCCTAATCGCGAGTAAGCTCCAGAGTGCAGCGTTAACCCTCGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGCACAGCAGTGTTATTTCAAAGGGGAAACTCTCCGCTTATTTCCTCCCGCATTAGGAGGAGAAATATCACACCCCCGATCACCCTCTTCGGCCAACCTATACCCTGGACCAGGAAGGTCAAGTACCTGGGAGTCACCCTGGATGCATCCATGACATTCCGCCCGCATATAAAAATAGTCCGTGACCGTGCCGCATTTATTCTCGGTAGACTCTATCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCCGTCGGGGCTCCGTGGTTCGTGAGGAACGTCGACCTACACGACGACCTGGGCCTCGAATCGATCCGCAAACACATGAAGTCAGTGTCGGAACGTTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTAGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGTCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGACGCCTTCAGCTCTAACACTAGGAGCAGGCTTAGGGACCCCGGTAACCGTACTCGTCGAACTCGACAAAGAGTTCGCCGTGCAACCTAA

Protein

MESTVDLFAEFLRLRYPTLSAEFLEFKTHHAANSPAVSVAPIAPASSIAASVTPADPVSPILAPKTSASTVAASAPTVRSSATYVASVRSSTASVVSASSTAPAKTPTRRSPAPSSSDSESDMEVDPSPAATTDGFTVVQKGKKRAAEARASAAAKVSKAANASRPRPPTPVAPAVRATPSPRPVAQSKTQTPPPVILQDKAAWDRVSLALKAKNINFVSARNLANGIQIKITTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDADLVKADLIEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEVQETLLKPARRDPKIANYNMVRNDRLTARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIIAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVIMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFSPDSTPSPQDTAEAIDIVTSHITSTLDRSSKQVVAEDFLHRFKLPDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVAMPPLVGPSGQLAAFDDEEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVKRRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPIQLIVMLASIFNAAMANCIFPAVWKEANVIGIHKPGKPKNNPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTQLALFADDTTVYYSSRNKSLIASKLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGNSPLISSRIRRRNITPPITLFGQPIPWTRKVKYLGVTLDASMTFRPHIKIVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHAGVSHRRRPRHVLTDPSDPITFALDAFSSNTRSRLRDPGNRTRRTRQRVRRAT

Uniprot

Q9XXW0   Q9BPQ0   Q93137   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
V5GNJ2   A0A139WA11   V5GNF3   K7IN67   X1WZH0   A0A2J7QR37   A0A2S2Q383   A0A2J7PU96   A0A2J7QY69   A0A2J7PBY3   A0A087UCW3   A0A2J7R7D0   A0A2M4CV52   A0A2M4CV42   A0A087UGF5   A0A224X6U5   A0A2M4BDV6   A0A2M4BD67   A0A069DZL8   A0A2M4BD83   A0A2S2P6S3  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
20075255    26334808   

EMBL

AB018558    BAA76304.1    AB055391    BAB21761.1    U07847    AAA17752.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    GALX01005359    JAB63107.1    ABLF02034467    NEVH01011985    PNF31054.1    GGMS01002992    MBY72195.1    NEVH01021205    PNF19912.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    KK119261    KFM75202.1    NEVH01006736    PNF36716.1    GGFL01004957    MBW69135.1    GGFL01005012    MBW69190.1    KK119692    KFM76444.1    GFTR01008251    JAW08175.1    GGFJ01001857    MBW50998.1    GGFJ01001858    MBW50999.1    GBGD01000415    JAC88474.1    GGFJ01001822    MBW50963.1    GGMR01012443    MBY25062.1   

Proteomes

UP000053268    UP000007266    UP000002358    UP000007819    UP000235965    UP000054359    + More

PRIDE

Q9XXW0    Q9BPQ0    Q93137   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9XXW0   Q9BPQ0   Q93137   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
V5GNJ2   A0A139WA11   V5GNF3   K7IN67   X1WZH0   A0A2J7QR37   A0A2S2Q383   A0A2J7PU96   A0A2J7QY69   A0A2J7PBY3   A0A087UCW3   A0A2J7R7D0   A0A2M4CV52   A0A2M4CV42   A0A087UGF5   A0A224X6U5   A0A2M4BDV6   A0A2M4BD67   A0A069DZL8   A0A2M4BD83   A0A2S2P6S3  

KEGG

105841788    no KO assigned | (RefSeq) predicted GPI-anchored protein 58

GO

GO:0003964   GO:0004519  

Length:

1235

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.07284

Exp number, first 60 AAs:

0.00527

Total prob of N-in:

0.00032

outside

1  -  1235

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

5.404253

CSRT

0

Interpretation

Uncertain