SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08063
Annotation
hypothetical_protein_M514_07281_[Trichuris_suis]
Location in the cell
Nuclear   Reliability : 2.599
 

Sequence

CDS
ATGGGATTGGGTGCAGTATTATTCCACAAGGACTCGAACATAGAACAACCAATTGCTTTTGCTTCAAGGAAACTACGACCAGCGGAAATGAAATATTCCGTTATTGATCGTGAAGCTTTAGCAATAGTATTTGGTATAAAAAAATTTGATCAGTACTTGAGAGGAACGAAATTTAATCTAGTTACGGACCATAAGCCTCTTATACATATTATGGGTGCACGCCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCTCTAGTAGTGGGAAGTTATCAATATGACATTTACTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCCTTTCCAGATTACCAAACCCTGAAACGGAACCCTCCGAGATAGAAGGGCTTGTACATAAAACAGAACTACGTCTTTTGAGCACTCGAATGACTGACCTTAACCTATCAGAACAGTTACTTATGAAAACAACTGCAAAGGATCATATACTCACAAAAGTTTGTCAAAATTTAAAAACCGGCTGGAGAGAATCAGAATACAATCCAGAAATGAAACCATTCTACAGAAACCGGGCTGAATTATCTGTTGAGAATAAGATACTTATGAGGCAAGGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATACCTTCATCGAGGACATCCTGGCATTTCTGCTATGAAAGCACTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAGAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCGACTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCCAAATGGGTGGAAATACGACCGATGAAACACATCAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGCTTACCAAAAATGATTATATCCGATAATGGACCTCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAGCAGTCTATTTTACATGTCACATCATCTCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTCAGAACATTCAAAAATAGAATGGCATCGGTAGACAACACAAATCTCGAGCGCCGACTATTAGAATTTTTGTTTACATACAGAAACACTCCGCACTCGTCCACTGGTAAATCTCCAGCTGAGATGATGTTTGGAAGACAATTGAATTGCATACTTTCCAACATTCGGCCAGACAAAAGAAGATTAATGCAGTATTTACAAGTAAAAGAAAATATTCGTACCACATCACCGAGTTACCGACCAAGTGACCAAGTATATATTAAAACACGCAATGATAAAATATGGGAACCAGCGGTAATTACATCCCGAAAACATAAATATTCATATATTGTTTCAACACCAGGAGGACTAGAAAAACGAAGACATGCTGATCGCATCAGGCCACGCGAGTCCTCCACCTCAGAAACCCCGAGGAATGAAAGGGCACATTCTTCTATGCTGGCGGCGACTGCTTCTCCAGACATTGGAATGGAAACAACAATTAGCGAAAGGCTAACTAAAAACAAGAATTTGGCAGCAGTACCATTACCTACACCGCAGTCGCCTACAAATGTACAAATTTCTCCAAATTCACCTTCACAGCATTCGCAGTTATACTCCTCACCTGCTCCGGTCTCCACTCCTGTGCCATTTGCTCCGCGTCGAAGTAATCGACGTATACAGGCACCCCGCCGTCTGATCAACGAGATGTAG
Protein
MGLGAVLFHKDSNIEQPIAFASRKLRPAEMKYSVIDREALAIVFGIKKFDQYLRGTKFNLVTDHKPLIHIMGARRNLPKLANNRLVRWALVVGSYQYDIYYRKGENNTLADCLSRLPNPETEPSEIEGLVHKTELRLLSTRMTDLNLSEQLLMKTTAKDHILTKVCQNLKTGWRESEYNPEMKPFYRNRAELSVENKILMRQGRIVIPTALRKAILTYLHRGHPGISAMKALSRYYVWWPNLDEDIELFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHIDFAGPFEGSYWLVLCDALSKWVEIRPMKHINTRSLCLTLDNIFCTFGLPKMIISDNGPQFTSYEFKEYCTKQSILHVTSSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTGKSPAEMMFGRQLNCILSNIRPDKRRLMQYLQVKENIRTTSPSYRPSDQVYIKTRNDKIWEPAVITSRKHKYSYIVSTPGGLEKRRHADRIRPRESSTSETPRNERAHSSMLAATASPDIGMETTISERLTKNKNLAAVPLPTPQSPTNVQISPNSPSQHSQLYSSPAPVSTPVPFAPRRSNRRIQAPRRLINEM

Summary

EMBL
GBHO01042589    JAG01015.1    GBHO01042596    JAG01008.1    GDHC01014693    GDHC01004534    + More
JAQ03936.1    JAQ14095.1    KL367712    KFD59941.1    KL367659    KFD60588.1    GFTR01008725    JAW07701.1    KL363234    KFD51952.1    JWZT01000439    KII74358.1    JWZT01002984    KII68048.1    JYDL01000067    KRX18868.1    GBHO01045651    GBHO01045644    GBHO01026684    GBHO01026679    JAF97952.1    JAF97959.1    JAG16920.1    JAG16925.1    JYDO01000377    KRZ65389.1    EF199622    ABM90393.1    AERX01052799    AERX01052800    JWZT01005674    KII60352.1    JYDL01000080    KRX17894.1    EF199621    ABM90392.1    JYDK01000060    KRX78865.1    HADW01008367    SBP09767.1    AZHX01001899    ETW98900.1    GEFM01002211    JAP73585.1    HADX01010638    SBP32870.1    GEFM01006397    JAP69399.1    JYDO01000093    KRZ71620.1    GBIH01000761    JAC93949.1    JYDP01000327    KRZ01162.1    JYDN01000036    KRX62859.1    MRZV01000143    PIK57404.1    GEGO01004800    JAR90604.1    KL367976    KFD59423.1    JYDL01000001    KRX27995.1    JYDW01000348    KRZ48953.1    JYDN01000181    KRX54093.1    AAGJ04101977    NIVC01001652    PAA65446.1    JYDH01000010    KRY40903.1    JYDJ01000471    KRX35129.1    KL363205    KFD54654.1    KRX54086.1    GFAA01002662    JAU00773.1    JYDI01000010    KRY59721.1    GEGO01004546    JAR90858.1    NIVC01000050    PAA92506.1    GEGO01004818    JAR90586.1    GFAC01001150    JAT98038.1    KL367587    KFD62819.1    GEGO01004533    JAR90871.1    KRX28257.1    GEGO01004812    JAR90592.1    AERX01039690    JYDI01000169    KRY49681.1    KRX62850.1    JYDQ01000025    KRY20467.1    JYDI01000800    KRY43965.1    KL363640    KFD45214.1    GEBQ01020673    GEBQ01011946    JAT19304.1    JAT28031.1    HAAD01006009    CDG72241.1    GEGO01004875    JAR90529.1    GEGO01004729    JAR90675.1    NIVC01000551    PAA81070.1    NIVC01000075    PAA91739.1    MRZV01000005    PIK62810.1    JYDH01000054    KRY35447.1    KRY35448.1    GEZM01001427    JAV97782.1    KL363295    KFD48373.1    GEGO01004367    JAR91037.1    JWZT01004052    KII64969.1    AY816119    AAW27851.1    AERX01075043    GEZM01002003    JAV97411.1   
Pfam
PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF00665   rve
PF17917   RT_RNaseH
PF00098   zf-CCHC
PF00077   RVP
PF04500   FLYWCH
Interpro
IPR012337   RNaseH-like_sf        + More
IPR001995   Peptidase_A2_cat       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR001969   Aspartic_peptidase_AS       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR000477   RT_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR041373   RT_RNaseH       
IPR034128   K02A2.6-like       
IPR018061   Retropepsins       
IPR007588   Znf_FLYWCH       
SUPFAM
SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
Gene 3D
PDB
3S3N     E-value=2.18389e-17,     Score=220

Ontologies

Topology

Length:
606
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00309
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00028
outside
1  -  606
 
 

Population Genetic Test Statistics

Pi
19.015019
Theta
27.985039
Tajima's D
-0.860541
CLR
0.118536
CSRT
0.165191740412979
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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