Gene

KWMTBOMO08063

Annotation

hypothetical_protein_M514_07281_[Trichuris_suis]

Location

Bomo_Chr13(-):13882395-13884414      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.599

CDS

ATGGGATTGGGTGCAGTATTATTCCACAAGGACTCGAACATAGAACAACCAATTGCTTTTGCTTCAAGGAAACTACGACCAGCGGAAATGAAATATTCCGTTATTGATCGTGAAGCTTTAGCAATAGTATTTGGTATAAAAAAATTTGATCAGTACTTGAGAGGAACGAAATTTAATCTAGTTACGGACCATAAGCCTCTTATACATATTATGGGTGCACGCCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCTCTAGTAGTGGGAAGTTATCAATATGACATTTACTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCCTTTCCAGATTACCAAACCCTGAAACGGAACCCTCCGAGATAGAAGGGCTTGTACATAAAACAGAACTACGTCTTTTGAGCACTCGAATGACTGACCTTAACCTATCAGAACAGTTACTTATGAAAACAACTGCAAAGGATCATATACTCACAAAAGTTTGTCAAAATTTAAAAACCGGCTGGAGAGAATCAGAATACAATCCAGAAATGAAACCATTCTACAGAAACCGGGCTGAATTATCTGTTGAGAATAAGATACTTATGAGGCAAGGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATACCTTCATCGAGGACATCCTGGCATTTCTGCTATGAAAGCACTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAGAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCGACTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCCAAATGGGTGGAAATACGACCGATGAAACACATCAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGCTTACCAAAAATGATTATATCCGATAATGGACCTCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAGCAGTCTATTTTACATGTCACATCATCTCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTCAGAACATTCAAAAATAGAATGGCATCGGTAGACAACACAAATCTCGAGCGCCGACTATTAGAATTTTTGTTTACATACAGAAACACTCCGCACTCGTCCACTGGTAAATCTCCAGCTGAGATGATGTTTGGAAGACAATTGAATTGCATACTTTCCAACATTCGGCCAGACAAAAGAAGATTAATGCAGTATTTACAAGTAAAAGAAAATATTCGTACCACATCACCGAGTTACCGACCAAGTGACCAAGTATATATTAAAACACGCAATGATAAAATATGGGAACCAGCGGTAATTACATCCCGAAAACATAAATATTCATATATTGTTTCAACACCAGGAGGACTAGAAAAACGAAGACATGCTGATCGCATCAGGCCACGCGAGTCCTCCACCTCAGAAACCCCGAGGAATGAAAGGGCACATTCTTCTATGCTGGCGGCGACTGCTTCTCCAGACATTGGAATGGAAACAACAATTAGCGAAAGGCTAACTAAAAACAAGAATTTGGCAGCAGTACCATTACCTACACCGCAGTCGCCTACAAATGTACAAATTTCTCCAAATTCACCTTCACAGCATTCGCAGTTATACTCCTCACCTGCTCCGGTCTCCACTCCTGTGCCATTTGCTCCGCGTCGAAGTAATCGACGTATACAGGCACCCCGCCGTCTGATCAACGAGATGTAG

Protein

MGLGAVLFHKDSNIEQPIAFASRKLRPAEMKYSVIDREALAIVFGIKKFDQYLRGTKFNLVTDHKPLIHIMGARRNLPKLANNRLVRWALVVGSYQYDIYYRKGENNTLADCLSRLPNPETEPSEIEGLVHKTELRLLSTRMTDLNLSEQLLMKTTAKDHILTKVCQNLKTGWRESEYNPEMKPFYRNRAELSVENKILMRQGRIVIPTALRKAILTYLHRGHPGISAMKALSRYYVWWPNLDEDIELFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHIDFAGPFEGSYWLVLCDALSKWVEIRPMKHINTRSLCLTLDNIFCTFGLPKMIISDNGPQFTSYEFKEYCTKQSILHVTSSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTGKSPAEMMFGRQLNCILSNIRPDKRRLMQYLQVKENIRTTSPSYRPSDQVYIKTRNDKIWEPAVITSRKHKYSYIVSTPGGLEKRRHADRIRPRESSTSETPRNERAHSSMLAATASPDIGMETTISERLTKNKNLAAVPLPTPQSPTNVQISPNSPSQHSQLYSSPAPVSTPVPFAPRRSNRRIQAPRRLINEM

Uniprot

A0A0A9W826   A0A0A9W3I3   A0A146L9N5   A0A085MRU5   A0A085MTP2   A0A224XI32   + More
A0A085M406   A0A0C2JXZ5   A0A0C2JFK2   A0A0V0RWN6   A0A3P8NV61   A0A3B3B4L9   A0A0A9XIJ3   A0A3P8Q506   A0A3P8REG6   A0A0V1M0R9   A2TGR5   A0A3P8NQC4   A0A1S3L075   A0A3P8NSN2   I3KY30   A0A1X7TWV5   A0A1X7VU64   A0A3P8NEQ7   A0A0C2IU42   A0A3B5BG14   A0A0V0RTT5   A2TGR4   A0A1X7T719   A0A183BQV4   A0A3P8VSE7   A0A0V0WST9   A0A1A7WUZ7   A0A1X7TIE8   W4LMH6   A0A131Y536   A0A1A7YSF0   A0A131XQT5   A0A0V1MIE6   A0A090XCC9   A0A3Q1GLI5   A0A1X7U623   A0A0V1GSV8   A0A0V0VH72   A0A2G8LB01   A0A147BIP4   A0A085MQC7   A0A3B3HJL6   A0A0V0SN26   A0A0V1KNI7   A0A0V0USW3   A0A1S3SSU6   W4Z9D5   A0A267EVG4   A0A0V1BVI1   A0A0V0T7V6   A0A1X7STP0   A0A085MBQ8   A0A0V0US17   A0A1E1XN56   A0A0V1DDI4   A0A147BJB1   A0A267H2K6   A0A147BII2   A0A1E1XFQ3   A0A085N023   A0A3P8NG09   A0A1S3KHX3   A0A147BJE4   A0A0V0SNI7   A0A147BJE5   I3KYR6   A0A0V1CKC4   A0A0V0VH28   A0A0V1A810   A0A1X7TH22   A0A0V1C3T1   A0A085LJR8   A0A1B6LWG3   T2MJH3   A0A147BIB8   A0A147BK15   A0A267G4Y1   A0A3B3TFN7   A0A267H2J3   A0A2G8LRL0   A0A0V1BER5   A0A3Q1F281   A0A0V1BEY8   A0A1Y1NIP2   A0A085LTS7   A0A147BJS0   A0A2I4C6V0   A0A0C2IHZ5   Q5D8K5   I3KXY9   A0A1Y1NHT7  

Pubmed

25401762    26823975    24929829    25381665    29451363    17694394    + More
25186727    24487278    24476823    25970599    29023486    29652888    17554307    29209593    28503490    24065732    29240929    28004739    16617374   

EMBL

GBHO01042589    JAG01015.1    GBHO01042596    JAG01008.1    GDHC01014693    GDHC01004534    + More
JAQ03936.1    JAQ14095.1    KL367712    KFD59941.1    KL367659    KFD60588.1    GFTR01008725    JAW07701.1    KL363234    KFD51952.1    JWZT01000439    KII74358.1    JWZT01002984    KII68048.1    JYDL01000067    KRX18868.1    GBHO01045651    GBHO01045644    GBHO01026684    GBHO01026679    JAF97952.1    JAF97959.1    JAG16920.1    JAG16925.1    JYDO01000377    KRZ65389.1    EF199622    ABM90393.1    AERX01052799    AERX01052800    JWZT01005674    KII60352.1    JYDL01000080    KRX17894.1    EF199621    ABM90392.1    JYDK01000060    KRX78865.1    HADW01008367    SBP09767.1    AZHX01001899    ETW98900.1    GEFM01002211    JAP73585.1    HADX01010638    SBP32870.1    GEFM01006397    JAP69399.1    JYDO01000093    KRZ71620.1    GBIH01000761    JAC93949.1    JYDP01000327    KRZ01162.1    JYDN01000036    KRX62859.1    MRZV01000143    PIK57404.1    GEGO01004800    JAR90604.1    KL367976    KFD59423.1    JYDL01000001    KRX27995.1    JYDW01000348    KRZ48953.1    JYDN01000181    KRX54093.1    AAGJ04101977    NIVC01001652    PAA65446.1    JYDH01000010    KRY40903.1    JYDJ01000471    KRX35129.1    KL363205    KFD54654.1    KRX54086.1    GFAA01002662    JAU00773.1    JYDI01000010    KRY59721.1    GEGO01004546    JAR90858.1    NIVC01000050    PAA92506.1    GEGO01004818    JAR90586.1    GFAC01001150    JAT98038.1    KL367587    KFD62819.1    GEGO01004533    JAR90871.1    KRX28257.1    GEGO01004812    JAR90592.1    AERX01039690    JYDI01000169    KRY49681.1    KRX62850.1    JYDQ01000025    KRY20467.1    JYDI01000800    KRY43965.1    KL363640    KFD45214.1    GEBQ01020673    GEBQ01011946    JAT19304.1    JAT28031.1    HAAD01006009    CDG72241.1    GEGO01004875    JAR90529.1    GEGO01004729    JAR90675.1    NIVC01000551    PAA81070.1    NIVC01000075    PAA91739.1    MRZV01000005    PIK62810.1    JYDH01000054    KRY35447.1    KRY35448.1    GEZM01001427    JAV97782.1    KL363295    KFD48373.1    GEGO01004367    JAR91037.1    JWZT01004052    KII64969.1    AY816119    AAW27851.1    AERX01075043    GEZM01002003    JAV97411.1   

Proteomes

UP000054630    UP000265100    UP000261560    UP000054843    UP000087266    UP000005207    + More
UP000007879    UP000261400    UP000050741    UP000265120    UP000054673    UP000019140    UP000257200    UP000055024    UP000054681    UP000230750    UP000001038    UP000054721    UP000007110    UP000215902    UP000054776    UP000055048    UP000054653    UP000054783    UP000261540    UP000192220   

Pfam

PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF00665   rve
PF17917   RT_RNaseH
PF00098   zf-CCHC
PF00077   RVP
PF04500   FLYWCH

Interpro

IPR012337   RNaseH-like_sf        + More
IPR001995   Peptidase_A2_cat       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR001969   Aspartic_peptidase_AS       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR000477   RT_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR041373   RT_RNaseH       
IPR034128   K02A2.6-like       
IPR018061   Retropepsins       
IPR007588   Znf_FLYWCH       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       

Gene 3D

2.40.70.10     3.30.420.10    

CDD

cd05484  retropepsin_like_LTR_2

ProteinModelPortal

A0A0A9W826   A0A0A9W3I3   A0A146L9N5   A0A085MRU5   A0A085MTP2   A0A224XI32   + More
A0A085M406   A0A0C2JXZ5   A0A0C2JFK2   A0A0V0RWN6   A0A3P8NV61   A0A3B3B4L9   A0A0A9XIJ3   A0A3P8Q506   A0A3P8REG6   A0A0V1M0R9   A2TGR5   A0A3P8NQC4   A0A1S3L075   A0A3P8NSN2   I3KY30   A0A1X7TWV5   A0A1X7VU64   A0A3P8NEQ7   A0A0C2IU42   A0A3B5BG14   A0A0V0RTT5   A2TGR4   A0A1X7T719   A0A183BQV4   A0A3P8VSE7   A0A0V0WST9   A0A1A7WUZ7   A0A1X7TIE8   W4LMH6   A0A131Y536   A0A1A7YSF0   A0A131XQT5   A0A0V1MIE6   A0A090XCC9   A0A3Q1GLI5   A0A1X7U623   A0A0V1GSV8   A0A0V0VH72   A0A2G8LB01   A0A147BIP4   A0A085MQC7   A0A3B3HJL6   A0A0V0SN26   A0A0V1KNI7   A0A0V0USW3   A0A1S3SSU6   W4Z9D5   A0A267EVG4   A0A0V1BVI1   A0A0V0T7V6   A0A1X7STP0   A0A085MBQ8   A0A0V0US17   A0A1E1XN56   A0A0V1DDI4   A0A147BJB1   A0A267H2K6   A0A147BII2   A0A1E1XFQ3   A0A085N023   A0A3P8NG09   A0A1S3KHX3   A0A147BJE4   A0A0V0SNI7   A0A147BJE5   I3KYR6   A0A0V1CKC4   A0A0V0VH28   A0A0V1A810   A0A1X7TH22   A0A0V1C3T1   A0A085LJR8   A0A1B6LWG3   T2MJH3   A0A147BIB8   A0A147BK15   A0A267G4Y1   A0A3B3TFN7   A0A267H2J3   A0A2G8LRL0   A0A0V1BER5   A0A3Q1F281   A0A0V1BEY8   A0A1Y1NIP2   A0A085LTS7   A0A147BJS0   A0A2I4C6V0   A0A0C2IHZ5   Q5D8K5   I3KXY9   A0A1Y1NHT7  

PDB

3S3N     E-value=2.18389e-17,     Score=220

KEGG

105842438    no KO assigned | (RefSeq) uncharacterized protein K02A2.6-like

GO

GO:0015074   GO:0004190   GO:0003676   GO:0008270   GO:0016021   GO:0016874   GO:0008253   GO:0004012   GO:0005524   GO:0015914   GO:0046872   GO:0006412   GO:0016876   GO:0043039  

Length:

606

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00309

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00028

outside

1  -  606

 

 

Pi

19.015019

Theta

27.985039

Tajima's D

-0.860541

CLR

0.118536

CSRT

0.165191740412979

Interpretation

Uncertain