SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08060
Pre Gene Modal
BGIBMGA001118
Annotation
PREDICTED:_7-methylguanosine_phosphate-specific_5'-nucleotidase_[Papilio_machaon]
Full name
5'-nucleotidase      
Location in the cell
Cytoplasmic   Reliability : 1.717 Extracellular   Reliability : 1.073
 

Sequence

CDS
ATGATAGACAGTTTTAGGAAGGGCGTTAAAGAATTGATAATTTGGAGTCAGACCCATGAGGTTCCGGTGCTGGTGTTCTCGGCGGGATTAGGAGAATCCGTTGTGGCAGCTTTGAAGGCGGCGAATTTTTTGTTACCGCACGTCAAGGTCGTATCAAACTTCTTAGCTCTCGACGAGAACGATAAAATAGTCGGTATAAAAGGCGAGGTCATACACACGTACAACAAAAACGAAACTGCCATTAAAAACACCGATTATTATAATTTAGTACAGCAAAGGAGTAATGTCATCTTAATGGGGGATAATATCGGTGACGCCGGAATGGCTGAGGGAATGGACCATTGTGATGTCGTCGTCAAAGTAGGGTTCCTCGGTCATAGCGCCGAAGGGAACCTCCCTAACTACAAGAAGAAATTCGATATAGTCCTAGTCAACGAACCATCTATGGACATTGTCAATGCCATGGTGAAACTGGTGCTGTGA
Protein
MIDSFRKGVKELIIWSQTHEVPVLVFSAGLGESVVAALKAANFLLPHVKVVSNFLALDENDKIVGIKGEVIHTYNKNETAIKNTDYYNLVQQRSNVILMGDNIGDAGMAEGMDHCDVVVKVGFLGHSAEGNLPNYKKKFDIVLVNEPSMDIVNAMVKLVL

Summary

Catalytic Activity
a ribonucleoside 5'-phosphate + H2O = a ribonucleoside + phosphate
Similarity
Belongs to the pyrimidine 5'-nucleotidase family.
EC Number
3.1.3.5
EMBL
BABH01000388    GDQN01010614    GDQN01004724    GDQN01001049    JAT80440.1    JAT86330.1    + More
JAT90005.1    NWSH01001864    PCG69867.1    KZ149891    PZC79076.1    KQ460397    KPJ15315.1    KQ459439    KPJ01014.1    ODYU01004396    SOQ44230.1    GAIX01005638    JAA86922.1    AGBW02012947    OWR44182.1    RSAL01000023    RVE52277.1    JTDY01006698    KOB65763.1    KQ971338    EFA01792.1    JTDY01006610    KOB65836.1    JTDY01000627    KOB76419.1    CH477190    EAT48697.1    EAT48696.1    GAPW01002874    JAC10724.1    JXUM01079005    KQ563101    KXJ74460.1    GFDL01008250    JAV26795.1    GGFM01007354    MBW28105.1    GGFJ01007807    MBW56948.1    GAMD01002708    JAA98882.1    DS232245    EDS38326.1    APGK01032103    APGK01032104    KB740835    KB632168    ENN78794.1    ERL89388.1    ADMH02000766    ETN65108.1    GANO01002042    JAB57829.1    GGFK01008332    MBW41653.1    GFDF01002776    JAV11308.1    GEZM01042433    JAV79854.1    ATLV01027083    KE525423    KFB53854.1    GFDF01002777    JAV11307.1    AAAB01008848    EAA07027.4    APCN01003547    PYGN01000160    PSN52496.1    AJWK01005748    AJWK01005749    AXCM01001000    AXCN02001814    NEVH01013205    PNF29815.1    KK852498    KDR22681.1    GDHF01017145    JAI35169.1    JAV79855.1    AAGJ04150365    AAGJ04150366    AAGJ04150367    AAGJ04150368    AAGJ04150369    AAGJ04150370    GDHF01004314    JAI48000.1    GDHC01006276    JAQ12353.1    GBRD01008155    JAG57666.1    OUUW01000001    SPP73402.1    UFQT01004973    SSX35839.1    IAAA01017168    IAAA01017169    IAAA01017170    LAA03570.1    GBYX01448962    GBYX01448961    JAO32521.1    HACG01018353    CEK65218.1    CM000071    EAL26580.1    CH479213    EDW33326.1    GEDC01027265    GEDC01026000    JAS10033.1    JAS11298.1    UFQT01000339    SSX23354.1    CP012524    ALC41872.1    GDHF01014400    JAI37914.1    GAKP01007553    JAC51399.1    IACF01002182    LAB67845.1    CH954179    EDV56970.1    CH916367    EDW00620.1    JW867077    AFO99594.1    CP026258    AWP15751.1    GG666565    EEN54562.1    AERX01024054    AERX01024055    AERX01024056    AERX01024057    JW865857    AFO98374.1    CH963850    EDW74673.1    GAMC01007708    JAB98847.1    CH940648    EDW60630.1   
Pfam
PF05822   UMPH-1        + More
PF08424   NRDE-2
PF06094   GGACT
Interpro
IPR036412   HAD-like_sf        + More
IPR023214   HAD_sf       
IPR006434   Pyrimidine_nucleotidase_eu       
IPR008265   Lipase_GDSL_AS       
IPR009288   AIG2-like       
IPR013633   NRDE-2       
IPR013024   GGCT-like       
IPR036568   GGCT-like_sf       
SUPFAM
SSF56784   SSF56784        + More
SSF110857   SSF110857       
Gene 3D
PDB
4NWI     E-value=1.78723e-31,     Score=334

Ontologies

Topology

Subcellular location
Cytoplasm  
Length:
160
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.900569999999998
Exp number, first 60 AAs:
0.89924
Total prob of N-in:
0.23810
outside
1  -  160
 
 

Population Genetic Test Statistics

Pi
14.848174
Theta
13.977292
Tajima's D
-0.94776
CLR
0.873013
CSRT
0.145292735363232
Interpretation
Uncertain
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