Gene

KWMTBOMO08056  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001119

Annotation

putative_rab_gdp-dissociation_inhibitor_[Danaus_plexippus]

Location

Bomo_Chr13(-):13775114-13776524      View in EpiBrowser

Full name

Rab GDP dissociation inhibitor      

Location in the cell

Cytoplasmic   Reliability : 2.708

CDS

ATGGATGAAGAATACGATGTGATTGTCCTGGGAACAGGCTTAAAAGAATGTATTTTAAGCGGCATGTTGTCGGTTTCTGGGAAGAAGGTTTTGCACATCGATCGCAATAAGTACTACGGTGGTGAATCTGCGTCAATTACCCCGTTAGAGGAGCTGTTCGCTAAGTTCAACGCACCGGCACCTGATGAAACATACGGTCGAGGTCGAGACTGGAACGTTGACTTGATTCCTAAGTTTCTGATGGCTAATGGATTGCTAGTCAAATTGCTTATTCACACGGGCGTCACCCGGTACTTGGAGTTTAAGTCCATCGAAGGAAGTTATGTTTACAAAGGTGGAAAAATCTCCAAAGTACCTGTCGATCAGAAAGAAGCTCTTGCGTCTGATCTTATGGGCATGTTTGAGAAGAGGCGTTTCCGCAACTTCTTAATCTACGTTCAAGATTTCCAGGAAGAAGATGCCAAGACATGGAAGGATTTTGATCCCTCAACTGCAAACATGCAGTCGCTGTACGATAAGTTTGGGTTAGATAGAAACACCCAAGATTTCACTGGACATGCTCTTGCCCTTTATTTGGATGATAATTATTTGCAACAGCCTGCTATCCAGACCATTCGCCGCATCAAGTTGTATTCTGATTCACTAGCGAAGTATGGTAAGTCTCCTTACCTTTACCCATTGTATGGATTGGGAGAACTTCCTCAAGGCTTTGCTCGCCTTTCTGCTATATATGGAGGAACCTATATGTTGGACAAACCCATAGATGAGATTGTCTTGGGAGAGGATGGAAAAGTGGTTGGTGTTCGCTCTGGCAATGAAACTGCCAAGTGTAAGCAGGTTTATTGTGACCCAAGCTATGTCCCTGACCGTGTCCGTAAGAAGGGTCAGGTGATACGATGCATTTGTCTATTAGATCATCCCATTTCTAACACCAAGGATGCACTTTCCACTCAGATTATAATCCCTCAAAAACAAGTTGAGAGGAATTCTGATATCTATGTGTCGGTTGTGTCCTACACTCACCAGGTTGCAGCTAAGGGTTGGTTTATTGCTATGGTCTCTACTACTGTTGAGACCAATGATCCTGAATCTGAAATCAGACCTGGTTTGGCTCTTTTGGGTGCCATTAGGCAAAAGTTTGTATCAGTGACTGACTATTATGAGCCAATCGATGATGGTAGCCAAAGCCAAATATTTATTTCGGAATCTTATGATGCCACCACACACTTTGAAACAACTTGTCTGGATGTGCTTAAAATTTATAAACATGGTACTGGGGAAGAATTTGATTTCTCTAAAGTCAAGCTGGAACTTGGTGAAGAGGATCAGTAA

Protein

MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFSKVKLELGEEDQ

Description

Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP.

Similarity

Belongs to the Rab GDI family.

Uniprot

H9IV39   A0A212EX23   A0A2W1BZQ0   A0A2A4K1K0   A0A0L7KQN1   A0A2H1WXM1   + More
A0A3G1T1P1   S4NYB2   I4DJ99   A0A194RCI4   A0A0T6BDG9   D1ZZ88   U4U2M7   J3JY58   N6TLG6   A0A1W4XER4   A0A0L0C761   A0A067RKN6   A0A034WKD2   A0A0C9QPE5   A0A2J7PBB1   A0A0A1XA11   A0A1B6C4F3   A0A2P8XKF7   A0A336MEY2   W8AJ19   A0A0V0G8A2   A0A023FAQ7   B3MUU8   A0A1Y1JW33   Q29PI0   B4GKT1   A0A1L8DMH4   A0A2R7VX09   A0A0P4VKM6   B4HYY0   B4Q7S8   R4G5K6   A0A224XCK9   A0A1B0GHG6   Q9VLB7   B4N181   A0A1W4VW81   B4M8X5   W5JBG4   B3N804   A0A3B0KHL9   B4KI70   A0A0M4EBU0   A0A069DZ04   A0A1B6LH51   D3TLZ8   A0A1B0GB89   U5EKB8   A0A1A9YHH7   A0A1B0C4N4   A0A2M3ZG78   A0A182F344   B4NY43   A0A2M4A4X2   Q16KQ6   A0A084WQU5   A0A0A9YVT4   A0A1A9ZY75   A0A182G1N6   A0A1A9UNT1   A0A2M3ZGC2   A0A1B6IAE7   A0A1B6GUM8   A0A182J6R9   R4WE19   A0A182Y666   T1E7Z6   A0A182PEF3   A0A182MCD6   A0A182TKM4   A0A182L7Y3   A0A182XHD9   Q7PMF3   A0A182HR58   A0A1J1IP53   B4JBA9   A0A182R1U7   A0A1Q3F5Q9   A0A182W8N1   A0A1L8EHH2   A0A182JQ96   T1PFG8   B0X6X0   A0A026WCW3   A0A182NNY7   A0A088AUN5   A0A1I8NLE0   A0A2A3ERU7   V9IIM0   A0A0P6BHJ4   A0A0P6E9E8   A0A0P5Q3S2   A0A0P4YIH8   A0A182Q297  

Pubmed

19121390    22118469    28756777    26227816    23622113    22651552    + More
26354079    18362917    19820115    23537049    22516182    26108605    24845553    25348373    25830018    29403074    24495485    25474469    17994087    28004739    15632085    27129103    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20920257    23761445    26334808    20353571    17550304    17510324    24438588    25401762    26483478    23691247    25244985    20966253    12364791    14747013    17210077    25315136    24508170    30249741   

EMBL

BABH01000397    AGBW02011847    OWR46039.1    KZ149891    PZC79074.1    NWSH01000278    + More
PCG77808.1    JTDY01006896    KOB65608.1    ODYU01011793    SOQ57742.1    MG992470    AXY94908.1    GAIX01013870    JAA78690.1    AK401367    KQ459439    BAM17989.1    KPJ01010.1    KQ460397    KPJ15312.1    LJIG01001562    KRT85378.1    KQ971338    EFA01887.1    KB631829    ERL86573.1    BT128182    AEE63143.1    APGK01019793    KB740125    ENN81299.1    JRES01000824    KNC28082.1    KK852570    KDR21130.1    GAKP01004145    JAC54807.1    GBYB01005479    JAG75246.1    NEVH01027118    PNF13624.1    GBXI01006531    JAD07761.1    GEDC01028916    JAS08382.1    PYGN01001863    PSN32444.1    UFQS01001111    UFQT01001111    SSX09041.1    SSX28952.1    GAMC01018050    JAB88505.1    GECL01002434    JAP03690.1    GBBI01000719    JAC17993.1    CH902624    EDV33013.1    GEZM01102110    JAV51970.1    CH379058    EAL34313.1    CH479184    EDW37247.1    GFDF01006509    JAV07575.1    KK854141    PTY12002.1    GDKW01000950    JAI55645.1    CH480818    EDW52260.1    CM000361    CM002910    EDX04360.1    KMY89266.1    ACPB03018544    GAHY01000460    JAA77050.1    GFTR01006271    JAW10155.1    AJWK01004600    AJWK01004601    AJWK01004602    AE014134    AY069697    BT003563    AAF52777.1    AAL39842.1    AAO39567.1    CH963920    EDW78021.1    CH940654    EDW57651.1    ADMH02001979    ETN60099.1    CH954177    EDV58365.1    OUUW01000010    SPP85889.1    CH933807    EDW12363.1    CP012523    ALC38972.1    GBGD01001485    JAC87404.1    GEBQ01017018    JAT22959.1    EZ422450    ADD18726.1    CCAG010011564    GANO01001869    JAB58002.1    JXJN01025562    GGFM01006740    MBW27491.1    CM000157    EDW88645.1    GGFK01002498    MBW35819.1    CH477942    EAT34894.1    ATLV01025746    KE525399    KFB52589.1    GBHO01007858    GBHO01007857    GBRD01006189    JAG35746.1    JAG35747.1    JAG59632.1    JXUM01038899    JXUM01038900    JXUM01038901    KQ561183    KXJ79448.1    GGFM01006749    MBW27500.1    GECU01023795    JAS83911.1    GECZ01017400    GECZ01003716    JAS52369.1    JAS66053.1    AK418019    BAN21234.1    GAMD01003198    JAA98392.1    AXCM01002537    AAAB01008980    EAA13926.2    APCN01001646    CVRI01000055    CRL01514.1    CH916368    EDW02914.1    GFDL01012202    JAV22843.1    GFDG01000750    JAV18049.1    KA647429    AFP62058.1    DS232428    EDS41641.1    KK107273    QOIP01000012    EZA53783.1    RLU16335.1    KZ288192    PBC34234.1    JR049246    AEY60910.1    GDIP01015036    JAM88679.1    GDIQ01067461    JAN27276.1    GDIQ01129581    JAL22145.1    GDIP01230422    JAI92979.1    AXCN02002097   

Proteomes

UP000005204    UP000007151    UP000218220    UP000037510    UP000053268    UP000053240    + More
UP000007266    UP000030742    UP000019118    UP000192223    UP000037069    UP000027135    UP000235965    UP000245037    UP000007801    UP000001819    UP000008744    UP000001292    UP000000304    UP000015103    UP000092461    UP000000803    UP000007798    UP000192221    UP000008792    UP000000673    UP000008711    UP000268350    UP000009192    UP000092553    UP000092444    UP000092443    UP000092460    UP000069272    UP000002282    UP000008820    UP000030765    UP000092445    UP000069940    UP000249989    UP000078200    UP000075880    UP000076408    UP000075885    UP000075883    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000183832    UP000001070    UP000075900    UP000075920    UP000075881    UP000095301    UP000002320    UP000053097    UP000279307    UP000075884    UP000005203    UP000095300    UP000242457    UP000075886   

PRIDE

H9IV39    Q9VLB7    A0A088AUN5   

Pfam

PF00996   GDI

Interpro

IPR000806   RabGDI        + More
IPR018203   GDP_dissociation_inhibitor       
IPR036188   FAD/NAD-bd_sf       

SUPFAM

SSF51905   SSF51905       

Gene 3D

3.50.50.60    

ProteinModelPortal

H9IV39   A0A212EX23   A0A2W1BZQ0   A0A2A4K1K0   A0A0L7KQN1   A0A2H1WXM1   + More
A0A3G1T1P1   S4NYB2   I4DJ99   A0A194RCI4   A0A0T6BDG9   D1ZZ88   U4U2M7   J3JY58   N6TLG6   A0A1W4XER4   A0A0L0C761   A0A067RKN6   A0A034WKD2   A0A0C9QPE5   A0A2J7PBB1   A0A0A1XA11   A0A1B6C4F3   A0A2P8XKF7   A0A336MEY2   W8AJ19   A0A0V0G8A2   A0A023FAQ7   B3MUU8   A0A1Y1JW33   Q29PI0   B4GKT1   A0A1L8DMH4   A0A2R7VX09   A0A0P4VKM6   B4HYY0   B4Q7S8   R4G5K6   A0A224XCK9   A0A1B0GHG6   Q9VLB7   B4N181   A0A1W4VW81   B4M8X5   W5JBG4   B3N804   A0A3B0KHL9   B4KI70   A0A0M4EBU0   A0A069DZ04   A0A1B6LH51   D3TLZ8   A0A1B0GB89   U5EKB8   A0A1A9YHH7   A0A1B0C4N4   A0A2M3ZG78   A0A182F344   B4NY43   A0A2M4A4X2   Q16KQ6   A0A084WQU5   A0A0A9YVT4   A0A1A9ZY75   A0A182G1N6   A0A1A9UNT1   A0A2M3ZGC2   A0A1B6IAE7   A0A1B6GUM8   A0A182J6R9   R4WE19   A0A182Y666   T1E7Z6   A0A182PEF3   A0A182MCD6   A0A182TKM4   A0A182L7Y3   A0A182XHD9   Q7PMF3   A0A182HR58   A0A1J1IP53   B4JBA9   A0A182R1U7   A0A1Q3F5Q9   A0A182W8N1   A0A1L8EHH2   A0A182JQ96   T1PFG8   B0X6X0   A0A026WCW3   A0A182NNY7   A0A088AUN5   A0A1I8NLE0   A0A2A3ERU7   V9IIM0   A0A0P6BHJ4   A0A0P6E9E8   A0A0P5Q3S2   A0A0P4YIH8   A0A182Q297  

PDB

1LV0     E-value=1.86797e-166,     Score=1504

KEGG

101738804    K17255 Rab GDP dissociation inhibitor | (RefSeq) rab GDP dissociation inhibitor alpha

GO

GO:0005096   GO:0007264   GO:0005093   GO:0005737   GO:0015031   GO:0017137   GO:0016740   GO:0016192   GO:0008021   GO:0005092   GO:0005829   GO:0016491   GO:0007269   GO:0006429   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR11787  

Subcellular location

Cytoplasm  

Length:

443

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.62598

Exp number, first 60 AAs:

0.42364

Total prob of N-in:

0.02668

outside

1  -  443

 

 

Pi

3.61649

Theta

7.29662

Tajima's D

-1.618335

CLR

20.112668

CSRT

0.0406479676016199

Interpretation

Uncertain