Silkworm Genome Informatics Database

Gene

KWMTBOMO08053

Pre Gene Modal

BGIBMGA001040

Annotation

hypothetical_protein_RR46_05272_[Papilio_xuthus]

Location

Bomo_Chr13(+):13688045-13692558 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.773

CDS

ATGAGAAGTAGTGGTTTGGTTTTGTTTGCATGCGCTGGACTCTTGTTTAGCGGTGGTGCCATCTTGGGCGGATCTGCAGCGTGGAGTCTGTTCCGGATGTCGTATTACTTTTGGACCTCAGACCTCGGCGTGGAGCTATCTTCTAGCGTGCTCTTCATAGCGGGCGCGCTACTGTGCCTCCCAACTTGTTGGCTGTCCACCCTTGTGCCTTATTACCCTAAATCTATTTCTTTATTGACTACCTTAATGTCCCTATTAATGGCGTCAATGTTCATGATATCATTGGGTATAAGTTCGATTACGGGCCTGTCGCGCGCTCTCCGCGAGCCGGCCGCTCTGAACGCGAGCATGGCGCAGGCGATGATGCTGGATGCCATCGATCCTGCGGTCCGAAGCTCTTTCGCTGCCATGCAACTCGAGTTGAAGTGCTGCGGAGTGAATTCTAACTTGGATTGGTATAAGCACCGAAGCTCGTATCCTCCGGCGTGCTGCGGACGTGCTTCTAATGAAAAGCGCGGGGAAAGGTGTGATTTTCCCTTGTACCCGACGGGTTGCTTGCGTCCCGCCCTTATTCAGCTACGGAACTATGTGAACTCGCTGTCGGCTCTAGCATCCGCTATGATCGTCTGCATGGCGGTGACGTTGTTTACGGCAGCTTACACTCTAGTGACGGGGGTCGTGGAACGGGGCGAGACTCATGTGTTCAAACCGCCGCAGCCGATGTTCGCTTCCTTCACCGCGCCCTCTGTCATTCCTATTGCGACACACCAAATGTGA

Protein

MRSSGLVLFACAGLLFSGGAILGGSAAWSLFRMSYYFWTSDLGVELSSSVLFIAGALLCLPTCWLSTLVPYYPKSISLLTTLMSLLMASMFMISLGISSITGLSRALREPAALNASMAQAMMLDAIDPAVRSSFAAMQLELKCCGVNSNLDWYKHRSSYPPACCGRASNEKRGERCDFPLYPTGCLRPALIQLRNYVNSLSALASAMIVCMAVTLFTAAYTLVTGVVERGETHVFKPPQPMFASFTAPSVIPIATHQM

Similarity

Belongs to the tetraspanin (TM4SF) family.

Uniprot

A0A2W1BXM4 A0A194Q646 A0A194RCW5 A0A212EX21 H9IUW0

Pubmed

28756777 26354079 22118469 19121390

EMBL

KZ149891 PZC79071.1 KQ459439 KPJ01007.1 KQ460397 KPJ15309.1 + More
AGBW02011847 OWR46033.1 BABH01000410

Proteomes

UP000053268 UP000053240 UP000007151 UP000005204

PRIDE

H9IUW0

Pfam

PF00335 Tetraspanin

Interpro

IPR018499 Tetraspanin/Peripherin + More
IPR008952 Tetraspanin_EC2_sf

SUPFAM

SSF48652 SSF48652

Gene 3D

1.10.1450.10

ProteinModelPortal

A0A2W1BXM4 A0A194Q646 A0A194RCW5 A0A212EX21 H9IUW0

KEGG

101739082 no KO assigned | (RefSeq) uncharacterized LOC101739082

GO

GO:0016021 GO:0003755 GO:0006457 GO:0006397 GO:0005515 GO:0005737 GO:0006429 GO:0006412 GO:0016876 GO:0043039

Length:

258

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

90.55363

Exp number, first 60 AAs:

35.88081

Total prob of N-in:

0.81750

POSSIBLE N-term signal

sequence

inside

1 - 6

TMhelix

7 - 29

outside

30 - 48

TMhelix

49 - 71

inside

72 - 77

TMhelix

78 - 100

outside

101 - 203

TMhelix

204 - 226

inside

227 - 258

Pi

14.162071

Theta

14.946016

Tajima's D

-0.853354

CLR

0.422444

CSRT

0.169991500424979

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics