Gene

KWMTBOMO08051  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001039

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_23_kDa_integral_membrane_protein-like_[Bombyx_mori]

Location

Bomo_Chr13(+):13672855-13680541      View in EpiBrowser

Full name

Tetraspanin      

Location in the cell

PlasmaMembrane   Reliability : 4.896

CDS

ATGGGTATGGGTGGAGCGATGGACAGCTGCGGGAGGTGCATGAAGTTCTCTCTAATATGTATCAACGTAATAACATTGATTGGCGGGGCTATAGCGCTGGCCATAGGACTATGGGTGTGGACGTCGCGTTCTTTCTCAAGCACGTTGATGAGCAACAACATGTTCATAGCGTCGGTCGGCGTGGTCGTGGCCATGGGAGTCGCCATAATGATCCTCTCGCTACTGGGATGTTGCGGCGCCGCTAAGGAAGTCAAATGCATGTTGCTCACGTACTACATTTTAGTTTTCATCATATTCGTTGTGATGTTAGTGGGAGGGATCTTGCAGTTCGTGTTCAGAGAGAAGGTTCTGACAACCCTAGACCGTGAGCTGTACGCATCTGTGCCCTATTATGGTGTCAAACACGAGTACACGAAATCCTGGGACGACACGCAGACCTATCTCCAATGTTGCGGAGTGAAGAGCCCTAATGACTGGCACGGGAATCTGCCGGAGAGCTGCTGCAGGGAAGCCTACCCTGGGAAGAGAATAGATTGCAAATCCAATCAAAACCCGACCACGATTTATGTCGACGGTTGCCTTGACAAGGTCATCGAGTTCCTGCGAGAGGACGCCGTGTATGTTGGTACTGCTGCCATCATTGTCGCAATTATAATGTTGCTGGCTTTAATACTCTCCTGTGGATTATTCGTGAAGATAGAATGA

Protein

MGMGGAMDSCGRCMKFSLICINVITLIGGAIALAIGLWVWTSRSFSSTLMSNNMFIASVGVVVAMGVAIMILSLLGCCGAAKEVKCMLLTYYILVFIIFVVMLVGGILQFVFREKVLTTLDRELYASVPYYGVKHEYTKSWDDTQTYLQCCGVKSPNDWHGNLPESCCREAYPGKRIDCKSNQNPTTIYVDGCLDKVIEFLREDAVYVGTAAIIVAIIMLLALILSCGLFVKIE

Similarity

Belongs to the tetraspanin (TM4SF) family.

Uniprot

H9IUV9   A0A2A4JLM6   A0A2H1VVV5   S4PLT9   A0A194Q7N2   I4DMS4   + More
A0A212EX32   A0A194RCI0   A0A1L8DKG3   A0A336MEI8   Q1HRC5   A0A1B0DMR9   R4G4M1   A0A069DXP3   A0A023EKN0   A0A182GXN8   A0A084VHX4   A0A182IP14   A0A023FAZ5   A0A1A9ZDM7   A0A1B0G2R3   A0A1A9Y1M5   A0A1A9UM22   A0A0A1XQL1   U5EU03   A0A034W5D9   A0A0K8U8E8   A0A034W6K6   A0A1B0BNA8   A0A182QAW2   W8ARR0   A0A0A9W7W6   A0A0L0CK57   A0A0A9VZB5   A0A182W1N0   A0A1B6MHK0   A0A1B6JGB7   B4KY87   A0A182UT61   A0A182TH91   A0A182WXG8   Q7QHT0   A0A1I8NRS1   B4LDC2   A0A3B0J4P2   A0A182RLI4   A0A0M4EK16   B4HLC3   B4QPC7   A0A1W4VSC5   B3M3U1   Q7JZI2   B4PJH0   B4GZS5   Q2LZ11   B3NDB4   W5JPZ8   B4N5G8   A0A2M3Z466   A0A2M4A7D8   A0A182FBZ2   A0A2M4BYI6   A0A0N0BFU5   T1P904   A0A0P4VI29   A0A3B0J426   B4IYJ0   A0A182Y712   A0A182N3B7   A0A182LY97   A0A182K6R4   A0A026W8X0   A0A088AUG1   A0A182PTY8   R4UMS1   A0A1Q3F4C9   B0WHI9   A0A0J7L9R8   A0A195CI66   A0A182HY43   A0A2J7PMT6   A0A1B6E035   A0A0L7R242   A0A195FC77   A0A195ELC8   A0A158NZK5   A0A1W4WSA2   A0A2A3ERC4   A0A151WM12   A0A1Q3F4D5   D2A3F2   A0A310S9U4   V9IMW1   A0A1Q3FU22   E2A432   A0A2S2QHY3   A0A1S4H799   A0A1A9WE37   A0A1J1IYZ2  

Pubmed

19121390    23622113    26354079    22651552    22118469    17204158    + More
17510324    26334808    24945155    26483478    24438588    25474469    25830018    25348373    24495485    25401762    26823975    26108605    17994087    18057021    12364791    14747013    17210077    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    15632085    23185243    20920257    23761445    25315136    27129103    25244985    24508170    30249741    21347285    18362917    19820115    20798317   

EMBL

BABH01000410    NWSH01001158    PCG72312.1    ODYU01004741    SOQ44938.1    GAIX01003860    + More
JAA88700.1    KQ459439    KPJ01005.1    AK402592    BAM19214.1    AGBW02011847    OWR46031.1    KQ460397    KPJ15307.1    GFDF01007250    JAV06834.1    UFQS01000997    UFQT01000997    SSX08337.1    SSX28360.1    DQ440169    CH477328    ABF18202.1    EAT43417.1    AJVK01016953    GAHY01000656    JAA76854.1    GBGD01002765    JAC86124.1    JXUM01114096    GAPW01003893    GAPW01003892    GAPW01003891    KQ565753    JAC09707.1    KXJ70704.1    JXUM01095965    JXUM01095966    JXUM01095967    JXUM01095968    JXUM01095969    KQ564234    KXJ72547.1    ATLV01013242    KE524847    KFB37568.1    AXCP01005813    GBBI01000609    JAC18103.1    CCAG010015561    CCAG010015562    GBXI01001469    JAD12823.1    GANO01001689    JAB58182.1    GAKP01009008    JAC49944.1    GDHF01029483    GDHF01021362    JAI22831.1    JAI30952.1    GAKP01009010    GAKP01009009    JAC49942.1    JXJN01017311    AXCN02001116    GAMC01019277    JAB87278.1    GBHO01042654    GBRD01007440    GDHC01005773    GDHC01003961    JAG00950.1    JAG58381.1    JAQ12856.1    JAQ14668.1    JRES01000296    KNC32635.1    GBHO01042655    GBRD01007439    GDHC01019848    JAG00949.1    JAG58382.1    JAP98780.1    GEBQ01004537    JAT35440.1    GECU01009783    JAS97923.1    CH933809    EDW19806.1    AAAB01008816    EAA05254.4    CH940647    EDW71029.1    OUUW01000002    SPP76505.1    CP012525    ALC43485.1    CH480815    EDW41943.1    CM000363    CM002912    EDX10921.1    KMZ00338.1    CH902618    EDV39275.1    KPU77986.1    AE014296    AY071260    AAF49286.1    AAL48882.1    AAN11686.1    CM000159    EDW94658.1    CH479199    EDW29502.1    CH379069    EAL29698.1    CH954178    EDV51907.1    ADMH02000442    ETN66467.1    CH964101    EDW79607.1    GGFM01002559    MBW23310.1    GGFK01003227    MBW36548.1    GGFJ01008979    MBW58120.1    KQ435794    KOX73598.1    KA645177    AFP59806.1    GDKW01003157    JAI53438.1    SPP76504.1    CH916366    EDV97663.1    AXCM01004565    KK107353    QOIP01000012    EZA52081.1    RLU15762.1    KC571896    AGM32395.1    GFDL01012662    JAV22383.1    DS231936    EDS27767.1    LBMM01000178    KMR04598.1    KQ977720    KYN00435.1    APCN01004490    NEVH01023960    PNF17651.1    GEDC01006002    JAS31296.1    KQ414666    KOC64945.1    KQ981685    KYN37996.1    KQ978747    KYN28684.1    ADTU01004713    ADTU01004714    KZ288192    PBC34343.1    KQ982944    KYQ48860.1    GFDL01012620    JAV22425.1    KQ971338    EFA01921.1    KQ766603    OAD53648.1    JR053762    AEY62014.1    GFDL01003951    JAV31094.1    GL436526    EFN71798.1    GGMS01008133    MBY77336.1    CVRI01000059    CRL03801.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000008820    + More
UP000092462    UP000069940    UP000249989    UP000030765    UP000075880    UP000092445    UP000092444    UP000092443    UP000078200    UP000092460    UP000075886    UP000037069    UP000075920    UP000009192    UP000075903    UP000075902    UP000076407    UP000007062    UP000095300    UP000008792    UP000268350    UP000075900    UP000092553    UP000001292    UP000000304    UP000192221    UP000007801    UP000000803    UP000002282    UP000008744    UP000001819    UP000008711    UP000000673    UP000007798    UP000069272    UP000053105    UP000095301    UP000001070    UP000076408    UP000075884    UP000075883    UP000075881    UP000053097    UP000279307    UP000005203    UP000075885    UP000002320    UP000036403    UP000078542    UP000075840    UP000235965    UP000053825    UP000078541    UP000078492    UP000005205    UP000192223    UP000242457    UP000075809    UP000007266    UP000000311    UP000091820    UP000183832   

PRIDE

H9IUV9    Q7JZI2   

Pfam

PF00335   Tetraspanin        + More
PF00627   UBA
PF08585   RMI1_N

Interpro

IPR000301   Tetraspanin        + More
IPR018499   Tetraspanin/Peripherin       
IPR018503   Tetraspanin_CS       
IPR008952   Tetraspanin_EC2_sf       
IPR015940   UBA       
IPR033472   DUF1767       
IPR002999   Tudor       
IPR009060   UBA-like_sf       
IPR013894   RMI1_N       

SUPFAM

SSF48652   SSF48652        + More
SSF46934   SSF46934       

Gene 3D

1.10.1450.10    

ProteinModelPortal

H9IUV9   A0A2A4JLM6   A0A2H1VVV5   S4PLT9   A0A194Q7N2   I4DMS4   + More
A0A212EX32   A0A194RCI0   A0A1L8DKG3   A0A336MEI8   Q1HRC5   A0A1B0DMR9   R4G4M1   A0A069DXP3   A0A023EKN0   A0A182GXN8   A0A084VHX4   A0A182IP14   A0A023FAZ5   A0A1A9ZDM7   A0A1B0G2R3   A0A1A9Y1M5   A0A1A9UM22   A0A0A1XQL1   U5EU03   A0A034W5D9   A0A0K8U8E8   A0A034W6K6   A0A1B0BNA8   A0A182QAW2   W8ARR0   A0A0A9W7W6   A0A0L0CK57   A0A0A9VZB5   A0A182W1N0   A0A1B6MHK0   A0A1B6JGB7   B4KY87   A0A182UT61   A0A182TH91   A0A182WXG8   Q7QHT0   A0A1I8NRS1   B4LDC2   A0A3B0J4P2   A0A182RLI4   A0A0M4EK16   B4HLC3   B4QPC7   A0A1W4VSC5   B3M3U1   Q7JZI2   B4PJH0   B4GZS5   Q2LZ11   B3NDB4   W5JPZ8   B4N5G8   A0A2M3Z466   A0A2M4A7D8   A0A182FBZ2   A0A2M4BYI6   A0A0N0BFU5   T1P904   A0A0P4VI29   A0A3B0J426   B4IYJ0   A0A182Y712   A0A182N3B7   A0A182LY97   A0A182K6R4   A0A026W8X0   A0A088AUG1   A0A182PTY8   R4UMS1   A0A1Q3F4C9   B0WHI9   A0A0J7L9R8   A0A195CI66   A0A182HY43   A0A2J7PMT6   A0A1B6E035   A0A0L7R242   A0A195FC77   A0A195ELC8   A0A158NZK5   A0A1W4WSA2   A0A2A3ERC4   A0A151WM12   A0A1Q3F4D5   D2A3F2   A0A310S9U4   V9IMW1   A0A1Q3FU22   E2A432   A0A2S2QHY3   A0A1S4H799   A0A1A9WE37   A0A1J1IYZ2  

PDB

2M7Z     E-value=0.0272878,     Score=85

KEGG

101739312    K17352 tetraspanin-11 | (RefSeq) 23 kDa integral membrane protein-like

GO

GO:0016021   GO:0005887   GO:0005634   GO:0005737   GO:0006397   GO:0005515   GO:0006429   GO:0006412   GO:0016876   GO:0043039  

Subcellular location

Membrane  

Length:

234

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

90.9162300000001

Exp number, first 60 AAs:

28.81707

Total prob of N-in:

0.99894

POSSIBLE N-term signal

sequence

inside

1  -  16

TMhelix

17  -  39

outside

40  -  53

TMhelix

54  -  76

inside

77  -  88

TMhelix

89  -  111

outside

112  -  208

TMhelix

209  -  231

inside

232  -  234

 

 

Pi

5.058779

Theta

12.48062

Tajima's D

-1.437485

CLR

34.904245

CSRT

0.064396780160992

Interpretation

Uncertain