Silkworm Genome Informatics Database

Gene

KWMTBOMO08049 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001038

Annotation

PREDICTED:_POC1_centriolar_protein_homolog_A_[Amyelois_transitella]

Location

Bomo_Chr13(+):13651025-13655896 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.924

CDS

ATGATGGAAGATAAAGTGACAACACCTGAACCTTGCCTGAAAAAGCAACTCAAAGGCCACAAAAACGCGATAACTGCTTTATATTACAACCCAAACGATCAACAAATTGCCACTAGTTCATTGGACAACAGTGTTTTACTTTGGGATCTACGTGGTACAATGCGTAGTTATAGGTTTCAAGGACATGATGAGGCGGTCATGGATGTGACATTCTCTTCTTCTGGGAAGTACATGGCATCTGCGTCTCGTGATAAAACAGTCAGAATCTGGGTACCGACTGTTACTGGGAGCACGGGCATGTTCAAAGCACATTCACAGACTGTGCGCTCAGTGCAATTTAGTTCAGATGGCTCGAAGATAATAACTGCATCAGATGACAAAGTTGTGAAACTGTGGTCAACCCACAAACACAAGTTCATATCATCTTTTGTGGGTCATACAAACTGGGTGAGATGCGCTCGAATGTCAAATGATGGGTCTATCATAGCATCATGTTCTGATGATAAGTCCACAAAACTCTGGAACCTAGATTCAGGAGAATGTATCCATACATATAAAGACCTTAAAGGTCACGGACTACACCTGGCTTGGCATCCTTCAGGATGTTATGTGGCTGTTGCTACATCACATGGAAATGTTAAATTATATGATATTCGTACTCATAATCTTGTACAATATTACAGTATACACAATGAAGCTGTCACACAAGTGGCAATACATCCAAGTGGTAGTTACATACTAACAGCTAGTAAAGATGGCAAAATGAAGATACTTGATTTATTAGAAGGTCATCCTATATTCACATTAAGCGGCCACAATGGACCTGTAAATGCTGTAAATTTCTCACCAACTGGAGACACTTTTTCTTCAGCTGGAGATGACAAATTGGTCTTTATATGGAAAACTAATTTTACTGATTTATCAAGTGAATCTAAAGAGAATGAAGGACAGAATATGATCACTGGACAGAGGTCTGCTTCACAGATATCAAAAGGGAGTTCATTGATGAGAAACAGAAAACAGGGTGTAAGAGAATGGTACCTATGCCACCACAGCATGAAGTATCCTGTGACTACATTTGTTCATTTTGATAATGATGGACCCGATACTGCTGTTGGACCAAGTTTTCAAGAACCAAATGCAAACAGTACAGTGATTGAACCAGATGGTAATATTAGTGTCATAAGACATGAATCTAGATTAAATCAAACATTACCTGAGAATTTTGCACCAGATTTGGGACCAGATCTGCCAGTTCATTCACAGAGTCAGGCAGAAGAATTAGTTTCTTATAGTGTTGGTCACACAAGTCATATACCACGTACTCCCCCTAGCCCTGCTACCTACAGCATACCTTCCATTATAAACAGGTCTATAGGTATTCAAATAGAACAAGAGGACTTATTTGGTATGATAAAACTTAGGGATAATGATGTGTGCTACACAAGTGGAACTATTGAATGGGTTGGTAGAAAAAGAAGTTTCCCTATCAACAGTGGATTTAAAATTATAAAAGAGCCTGGCCAACCTGGACCTCAACTAAAAAGGATGAAAAAATTTAATAAATCTTTGAGTTTTGGTGTAGACAAATTAAAAGAGTGTGATTGTGCTGATGTCTTACCTACTGTAAATGCAATTGTAGATCATTTGAATGCATTGCATGAAGCTGTAGACCTTATAGACTTACGTTTAAGCTCTGTTGAGGATAGAATTGTCAAAAATAATTAG

Protein

MMEDKVTTPEPCLKKQLKGHKNAITALYYNPNDQQIATSSLDNSVLLWDLRGTMRSYRFQGHDEAVMDVTFSSSGKYMASASRDKTVRIWVPTVTGSTGMFKAHSQTVRSVQFSSDGSKIITASDDKVVKLWSTHKHKFISSFVGHTNWVRCARMSNDGSIIASCSDDKSTKLWNLDSGECIHTYKDLKGHGLHLAWHPSGCYVAVATSHGNVKLYDIRTHNLVQYYSIHNEAVTQVAIHPSGSYILTASKDGKMKILDLLEGHPIFTLSGHNGPVNAVNFSPTGDTFSSAGDDKLVFIWKTNFTDLSSESKENEGQNMITGQRSASQISKGSSLMRNRKQGVREWYLCHHSMKYPVTTFVHFDNDGPDTAVGPSFQEPNANSTVIEPDGNISVIRHESRLNQTLPENFAPDLGPDLPVHSQSQAEELVSYSVGHTSHIPRTPPSPATYSIPSIINRSIGIQIEQEDLFGMIKLRDNDVCYTSGTIEWVGRKRSFPINSGFKIIKEPGQPGPQLKRMKKFNKSLSFGVDKLKECDCADVLPTVNAIVDHLNALHEAVDLIDLRLSSVEDRIVKNN

Uniprot

A0A2A4JJP8 A0A212EWZ5 A0A194RDE8 A0A194Q641 A0A0L7LH55

Pubmed

22118469 26354079 26227816

EMBL

NWSH01001158 PCG72315.1 AGBW02011847 OWR46028.1 KQ460397 KPJ15305.1 + More
KQ459439 KPJ01002.1 JTDY01001208 KOB74536.1

Proteomes

UP000218220 UP000007151 UP000053240 UP000053268 UP000037510

Pfam

PF08662 eIF2A + More
PF00400 WD40

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR019775   WD40_repeat_CS
IPR013979   TIF_beta_prop-like
IPR020472   G-protein_beta_WD-40_rep
IPR001680   WD40_repeat
IPR017986   WD40_repeat_dom
IPR015943   WD40/YVTN_repeat-like_dom_sf

SUPFAM

SSF50978 SSF50978

Gene 3D

2.130.10.10

ProteinModelPortal

A0A2A4JJP8 A0A212EWZ5 A0A194RDE8 A0A194Q641 A0A0L7LH55

PDB

2YMU E-value=8.46178e-42, Score=430

KEGG

101740288 K16482 centriolar protein POC1 | (RefSeq) POC1 centriolar protein homolog A

GO

GO:0005515 GO:0006886 GO:0008536 GO:0005524 GO:0004823 GO:0005737 GO:0006429 GO:0006412 GO:0016876 GO:0043039

Length:

575

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01713

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00242

outside

1 - 575

Pi

17.229446

Theta

16.721697

Tajima's D

0.082586

CLR

0.729026

CSRT

0.40077996100195

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics